Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8304723.1

Orthogroup ID

OG0014407

Physical Location & Seq

Genomic Coordinates Reverse (-)

233 .. 841

Gene Structure 609 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8304723.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 609 bp

atgggtgtggaaaagctcattgcatcaaagatgatgctgcctggttccaacagaagaattcattctgttcatcgccactctggcatggctgtggcaggattagcagctgatggcaggcagattgttgccaggacaaagtcggaagctaccaactatgaaaatgtgtatggtgatcagattcctatcaaggaacttgctgaacgtgttgccagttatgtgcatctgtgcacactatattggtggctcagaccttttggatgtgggatcatccttggaggttatgacagagatgggccacaattgtacatggttgaaccttctggtgtttcttacaggtattttggtgcagcaattgggaagggaaggcaggctgctaaaacagagattgaaaagttgaagctttcggaattgacttgtcggcaaggtgttattgaagtagccaagatcatttatggaatacacgatgaggcgaaggacaaagactttgaattggaaatgagctgggtctgcgatgaatcgaaccgtctgcatcagaaggttccagatgagcttctagaggaagcaaaggcagcggcaagagcagcattggaagaaatggatgcagactaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000502 GO:0005575 GO:0005576 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005773 GO:0005774 GO:0005829 GO:0005839 GO:0006950 GO:0008150 GO:0009266 GO:0009409 GO:0009628 GO:0010035 GO:0010038 GO:0016020 GO:0019773 GO:0031090 GO:0032991 GO:0042221 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0046686 GO:0048046 GO:0050896 GO:0098588 GO:0098805 GO:1902494 GO:1905368 GO:1905369

KEGG Pathways

Metabolic & Signaling

ko03050 map03050

Pfam Domains

Protein Families

Proteasome Proteasome_A_N

Protein Analysis

202

Amino Acids

22.54

Weight (kDa)

5.91

Isoelectric Point (pI)

37.26

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0014407)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G27020 AT2G27020
fragaria_vesca	FvH4_5g23670
malus_domestica	MD14G1092100.v1.1
prunus_persica	Prupe.7G022800_v2.0.a1 Prupe.7G022800_v2.0.a1
pyrus_communis	pycom14g08930 pycom14g08970
rosa_chinensis	RchiOBHm_Chr7g0212971
rosa_laevigata	RLG00000002841
rosa_multiflora	Rmu_co8304723.1_g000001
rosa_roxburghii	Rroxscaffold_3G00246370
rosa_samantha	Rh7AG269800 Rh7BG265200 Rh7CG289000 Rh7DG277900
rosa_wichuraiana	Rw7G023440

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	572
AclWI	GGATC	1 cut(s)	272
AcsI	RAATTY	1 cut(s)	57
AfaI	GTAC	1 cut(s)	305
AflIII	ACRYGT	1 cut(s)	202
AgsI	TTSAA	5 cut(s)	314, 389, 397, 434, 488
AjnI	CCWGG	2 cut(s)	40, 128
AluBI	AGCT	6 cut(s)	16, 107, 146, 400, 501, 550
AluI	AGCT	6 cut(s)	16, 107, 146, 400, 501, 550
Alw21I	GWGCWC	1 cut(s)	230
Alw44I	GTGCAC	1 cut(s)	226
AlwI	GGATC	1 cut(s)	272
AoxI	GGCC	1 cut(s)	293
ApaLI	GTGCAC	1 cut(s)	226
ApeKI	GCWGC	6 cut(s)	37, 104, 347, 371, 569, 581
ApoI	RAATTY	1 cut(s)	57
ArsI	GACNNNNNNTTYG	2 cut(s)	467, 499
Asp700I	GAANNNNTTC	1 cut(s)	61
AspS9I	GGNCC	1 cut(s)	293
AsuHPI	GGTGA	1 cut(s)	182
BaeGI	GKGCMC	1 cut(s)	230
Bbv12I	GWGCWC	1 cut(s)	230
BbvI	GCAGC	6 cut(s)	24, 116, 358, 359, 581, 593
BccI	CCATC	2 cut(s)	104, 284
BcgI	CGANNNNNNTGC	2 cut(s)	508, 542
BciT130I	CCWGG	2 cut(s)	42, 130
BclI	TGATCA	1 cut(s)	172
BfaI	CTAG	1 cut(s)	554
BglI	GCCNNNNNGGC	1 cut(s)	81
BisI	GCNGC	7 cut(s)	38, 105, 348, 372, 570, 573, 582
BlsI	GCNGC	7 cut(s)	39, 106, 349, 373, 571, 574, 583
Bme1390I	CCNGG	2 cut(s)	42, 130
BmgT120I	GGNCC	1 cut(s)	293
BmiI	GGNNCC	2 cut(s)	46, 540
BmrFI	CCNGG	2 cut(s)	42, 130
BmsI	GCATC	5 cut(s)	24, 32, 229, 538, 589
BsaBI	GATNNNNATC	1 cut(s)	182
BsaJI	CCNNGG	1 cut(s)	271
Bse1I	ACTGG	1 cut(s)	210
Bse3DI	GCAATG	1 cut(s)	18
Bse8I	GATNNNNATC	1 cut(s)	182
BseBI	CCWGG	2 cut(s)	42, 130
BseDI	CCNNGG	1 cut(s)	271
BseGI	GGATG	3 cut(s)	263, 267, 604
BseJI	GATNNNNATC	1 cut(s)	182
BseMI	GCAATG	1 cut(s)	18
BseMII	CTCAG	1 cut(s)	259
BseNI	ACTGG	1 cut(s)	210
BseSI	GKGCMC	1 cut(s)	230
BseXI	GCAGC	6 cut(s)	24, 116, 358, 359, 581, 593
BseYI	CCCAGC	1 cut(s)	501
BsgI	GTGCAG	1 cut(s)	366
BshFI	GGCC	1 cut(s)	295
BsiHKAI	GWGCWC	1 cut(s)	230
BsnI	GGCC	1 cut(s)	295
Bsp1286I	GDGCHC	1 cut(s)	230
Bsp1407I	TGTACA	1 cut(s)	303
Bsp143I	GATC	3 cut(s)	172, 264, 444
BspACI	CCGC	1 cut(s)	572
BspANI	GGCC	1 cut(s)	295
BspCNI	CTCAG	1 cut(s)	258
BspLI	GGNNCC	2 cut(s)	46, 540
BspPI	GGATC	1 cut(s)	272
BsrDI	GCAATG	1 cut(s)	18
BsrGI	TGTACA	1 cut(s)	303
BsrI	ACTGG	1 cut(s)	210
BssECI	CCNNGG	1 cut(s)	271
BssMI	GATC	3 cut(s)	172, 264, 444
BssT1I	CCWWGG	1 cut(s)	271
Bst2UI	CCWGG	2 cut(s)	42, 130
Bst4CI	ACNGT	1 cut(s)	524
BstAUI	TGTACA	1 cut(s)	303
BstC8I	GCNNGC	2 cut(s)	116, 369
BstDEI	CTNAG	1 cut(s)	245
BstF5I	GGATG	3 cut(s)	263, 267, 604
BstKTI	GATC	3 cut(s)	175, 267, 447
BstMBI	GATC	3 cut(s)	172, 264, 444
BstMWI	GCNNNNNNNGC	6 cut(s)	81, 101, 507, 569, 578, 581
BstNI	CCWGG	2 cut(s)	42, 130
BstSCI	CCNGG	2 cut(s)	40, 128
BstSLI	GKGCMC	1 cut(s)	230
BstV1I	GCAGC	6 cut(s)	24, 116, 358, 359, 581, 593
BsuRI	GGCC	1 cut(s)	295
BtgZI	GCGATG	2 cut(s)	56, 525
BtsCI	GGATG	3 cut(s)	263, 267, 604
Cac8I	GCNNGC	2 cut(s)	116, 369
Cfr13I	GGNCC	1 cut(s)	293
Csp6I	GTAC	1 cut(s)	304
CviAII	CATG	2 cut(s)	85, 307
CviQI	GTAC	1 cut(s)	304
DdeI	CTNAG	1 cut(s)	245
DpnI	GATC	3 cut(s)	174, 266, 446
DpnII	GATC	3 cut(s)	172, 264, 444
Eco130I	CCWWGG	1 cut(s)	271
EcoRI	GAATTC	1 cut(s)	57
EcoRII	CCWGG	2 cut(s)	40, 128
EcoT14I	CCWWGG	1 cut(s)	271
ErhI	CCWWGG	1 cut(s)	271
FaeI	CATG	2 cut(s)	88, 310
FaiI	YATR	8 cut(s)	86, 156, 168, 216, 235, 282, 308, 453
FatI	CATG	2 cut(s)	84, 306
FbaI	TGATCA	1 cut(s)	172
Fnu4HI	GCNGC	7 cut(s)	38, 105, 348, 372, 570, 573, 582
FokI	GGATG	2 cut(s)	254, 270
Fsp4HI	GCNGC	7 cut(s)	38, 105, 348, 372, 570, 573, 582
FspBI	CTAG	1 cut(s)	554
GluI	GCNGC	7 cut(s)	38, 105, 348, 372, 570, 573, 582
GsaI	CCCAGC	1 cut(s)	505
HaeIII	GGCC	1 cut(s)	295
Hin1II	CATG	2 cut(s)	88, 310
HindIII	AAGCTT	1 cut(s)	398
HinfI	GANTC	2 cut(s)	178, 515
HphI	GGTGA	1 cut(s)	182
Hpy166II	GTNNAC	1 cut(s)	228
Hpy188I	TCNGA	5 cut(s)	142, 177, 248, 406, 534
Hpy188III	TCNNGA	2 cut(s)	542, 554
Hpy8I	GTNNAC	1 cut(s)	228
HpyAV	CCTTC	5 cut(s)	327, 352, 357, 466, 529
HpyCH4III	ACNGT	1 cut(s)	524
HpyCH4IV	ACGT	1 cut(s)	202
HpyCH4V	TGCA	6 cut(s)	23, 220, 228, 347, 529, 602
HpyF10VI	GCNNNNNNNGC	6 cut(s)	81, 101, 507, 569, 578, 581
HpyF3I	CTNAG	1 cut(s)	245
HpySE526I	ACGT	1 cut(s)	202
Hsp92II	CATG	2 cut(s)	88, 310
Ksp22I	TGATCA	1 cut(s)	172
Kzo9I	GATC	3 cut(s)	172, 264, 444
Lsp1109I	GCAGC	6 cut(s)	24, 116, 358, 359, 581, 593
LweI	GCATC	5 cut(s)	24, 32, 229, 538, 589
MaeI	CTAG	1 cut(s)	554
MaeII	ACGT	1 cut(s)	202
MalI	GATC	3 cut(s)	174, 266, 446
MboI	GATC	3 cut(s)	172, 264, 444
MboII	GAAGA	2 cut(s)	66, 602
MfeI	CAATTG	2 cut(s)	299, 351
MhlI	GDGCHC	1 cut(s)	230
MluCI	AATT	5 cut(s)	57, 299, 351, 407, 488
MmeI	TCCRAC	2 cut(s)	72, 120
MnlI	CCTC	3 cut(s)	269, 460, 550
MroXI	GAANNNNTTC	1 cut(s)	61
MslI	CAYNNNNRTG	1 cut(s)	89
MspA1I	CMGCKG	2 cut(s)	107, 572
MspR9I	CCNGG	2 cut(s)	42, 130
MunI	CAATTG	2 cut(s)	299, 351
MvaI	CCWGG	2 cut(s)	42, 130
MwoI	GCNNNNNNNGC	6 cut(s)	81, 101, 507, 569, 578, 581
NdeII	GATC	3 cut(s)	172, 264, 444
NlaIII	CATG	2 cut(s)	88, 310
NlaIV	GGNNCC	2 cut(s)	46, 540
PdmI	GAANNNNTTC	1 cut(s)	61
PfeI	GAWTC	2 cut(s)	178, 515
PflFI	GACNNNGTC	1 cut(s)	136
PkrI	GCNGC	7 cut(s)	39, 106, 349, 373, 571, 574, 583
Psp6I	CCWGG	2 cut(s)	40, 128
PspFI	CCCAGC	1 cut(s)	501
PspGI	CCWGG	2 cut(s)	40, 128
PspN4I	GGNNCC	2 cut(s)	46, 540
PspPI	GGNCC	1 cut(s)	293
PsyI	GACNNNGTC	1 cut(s)	136
PvuII	CAGCTG	1 cut(s)	107
RsaI	GTAC	1 cut(s)	305
RsaNI	GTAC	1 cut(s)	304
RseI	CAYNNNNRTG	1 cut(s)	89
SatI	GCNGC	7 cut(s)	38, 105, 348, 372, 570, 573, 582
Sau3AI	GATC	3 cut(s)	172, 264, 444
Sau96I	GGNCC	1 cut(s)	293
ScrFI	CCNGG	2 cut(s)	42, 130
SduI	GDGCHC	1 cut(s)	230
SfaNI	GCATC	5 cut(s)	24, 32, 229, 538, 589
SmiMI	CAYNNNNRTG	1 cut(s)	89
Sse9I	AATT	5 cut(s)	57, 299, 351, 407, 488
SsiI	CCGC	1 cut(s)	572
SspMI	CTAG	1 cut(s)	554
StyD4I	CCNGG	2 cut(s)	40, 128
StyI	CCWWGG	1 cut(s)	271
TaaI	ACNGT	1 cut(s)	524
TaiI	ACGT	1 cut(s)	205
TaqI	TCGA	1 cut(s)	518
TasI	AATT	5 cut(s)	57, 299, 351, 407, 488
TatI	WGTACW	1 cut(s)	303
TauI	GCSGC	1 cut(s)	575
TfiI	GAWTC	2 cut(s)	178, 515
TseI	GCWGC	6 cut(s)	37, 104, 347, 371, 569, 581
TspDTI	ATGAA	4 cut(s)	50, 59, 171, 528
Tth111I	GACNNNGTC	1 cut(s)	136
VneI	GTGCAC	1 cut(s)	226
XapI	RAATTY	1 cut(s)	57
XbaI	TCTAGA	1 cut(s)	553
XmnI	GAANNNNTTC	1 cut(s)	61
XspI	CTAG	1 cut(s)	554

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.