Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp07

Orthogroup ID

OG0014407

Physical Location & Seq

Genomic Coordinates Reverse (-)

3554961 .. 3561606

Gene Structure 6646 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.7G022800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 750 bp

ATGAGCAGCATTGGAACAGGTTACGATCTCTCCGTCACCACATTTTCTCCTGATGGCCGCGTCTTCCAGATCGAGTACGCCGCCAAAGCCGTTGACAACTCCGGGACTGTTATTGGGATCAAATGTAAGGACGGCGTTGTTATGGGTGTTGAAAAGCTTATAGCGTCGAAGATGATGTTGCCAGGTTCCAATAGAAGGATTCATTCTGTTCATCGCCACTCCGGCATGGCAGTTGCTGGATTAGCAGCAGATGGAAGGCAAATTGTTGCCAGGACCAAGTCTGAAGCTAACAACTATGAAAGTGTGTATGGTGAACAGATTCCTGTTAAGGAACTTGCCGAACGTGTTGCTAGCTATGTGCATTTGTGTACGCTATATTGGTGGCTCAGACCTTTTGGATGTGGGATAATCCTTGGAGGTTATGACAGAGATGGGCCACAACTGTACATGGTTGAACCTTCCGGCATTTCTTATAGGTATTTTGGTGCTGCAATTGGAAAGGGCAGGCAGGCTGCTAAGACTGAGATTGAAAAGTTGAAGCTCTCGGAATTGACTTGTCGGCAAGGTGTTATTGAAGTAGCCAAGATCATTTATGGAATCCATGATGAGGCAAAGGACAAGGACTTTGAATTAGAAATGAGCTGGGTCTGTGATGAATCAAACCGTCAGCATCAGAAGGTTCCAGATGAGCTTCTAGAGGAAGCAAAGGCAGCAGCTAGAGCAGCATTGGAAGAAATGGATGCAGATTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000502 GO:0005575 GO:0005576 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005773 GO:0005774 GO:0005829 GO:0005839 GO:0006950 GO:0008150 GO:0009266 GO:0009409 GO:0009628 GO:0010035 GO:0010038 GO:0016020 GO:0019773 GO:0031090 GO:0032991 GO:0042221 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0046686 GO:0048046 GO:0050896 GO:0098588 GO:0098805 GO:1902494 GO:1905368 GO:1905369

KEGG Pathways

Metabolic & Signaling

ko03050 map03050

Pfam Domains

Protein Families

Proteasome Proteasome_A_N

Protein Analysis

250

Amino Acids

27.44

Weight (kDa)

5.76

Isoelectric Point (pI)

40.57

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0014407)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G27020 AT2G27020
fragaria_vesca	FvH4_5g23670
malus_domestica	MD14G1092100.v1.1
prunus_persica	Prupe.7G022800_v2.0.a1 Prupe.7G022800_v2.0.a1
pyrus_communis	pycom14g08930 pycom14g08970
rosa_chinensis	RchiOBHm_Chr7g0212971
rosa_laevigata	RLG00000002841
rosa_multiflora	Rmu_co8304723.1_g000001
rosa_roxburghii	Rroxscaffold_3G00246370
rosa_samantha	Rh7AG269800 Rh7BG265200 Rh7CG289000 Rh7DG277900
rosa_wichuraiana	Rw7G023440

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	60
AciI	CCGC	2 cut(s)	58, 81
AclWI	GGATC	1 cut(s)	125
AcoI	YGGCCR	1 cut(s)	55
AcuI	CTGAAG	1 cut(s)	303
AfaI	GTAC	3 cut(s)	77, 370, 446
AfiI	CCNNNNNNNGG	2 cut(s)	195, 607
AflIII	ACRYGT	1 cut(s)	343
AgsI	TTSAA	6 cut(s)	152, 455, 530, 538, 575, 629
AjnI	CCWGG	2 cut(s)	181, 269
AluBI	AGCT	7 cut(s)	157, 287, 354, 541, 642, 691, 716
AluI	AGCT	7 cut(s)	157, 287, 354, 541, 642, 691, 716
AlwI	GGATC	1 cut(s)	125
AlwNI	CAGNNNCTG	1 cut(s)	236
AoxI	GGCC	2 cut(s)	55, 434
ApeKI	GCWGC	7 cut(s)	6, 245, 488, 512, 710, 713, 722
ArsI	GACNNNNNNTTYG	2 cut(s)	608, 640
Asp700I	GAANNNNTTC	1 cut(s)	318
AspS9I	GGNCC	2 cut(s)	273, 434
AsuC2I	CCSGG	1 cut(s)	103
AsuHPI	GGTGA	2 cut(s)	28, 323
AsuNHI	GCTAGC	1 cut(s)	350
AvaII	GGWCC	1 cut(s)	273
BbsI	GAAGAC	1 cut(s)	55
BbvI	GCAGC	7 cut(s)	18, 257, 475, 499, 722, 725, 734
BccI	CCATC	3 cut(s)	47, 245, 425
BceAI	ACGGC	2 cut(s)	74, 148
BcgI	CGANNNNNNTGC	2 cut(s)	329, 363
BciT130I	CCWGG	2 cut(s)	183, 271
BcnI	CCSGG	1 cut(s)	103
BfaI	CTAG	3 cut(s)	351, 695, 717
BglI	GCCNNNNNGGC	1 cut(s)	222
BisI	GCNGC	9 cut(s)	7, 58, 81, 246, 489, 513, 711, 714, 723
BlsI	GCNGC	9 cut(s)	8, 59, 82, 247, 490, 514, 712, 715, 724
Bme1390I	CCNGG	3 cut(s)	103, 183, 271
Bme18I	GGWCC	1 cut(s)	273
BmgT120I	GGNCC	2 cut(s)	273, 434
BmiI	GGNNCC	2 cut(s)	187, 681
BmrFI	CCNGG	3 cut(s)	103, 183, 271
BmsI	GCATC	2 cut(s)	679, 730
BmtI	GCTAGC	1 cut(s)	354
BpiI	GAAGAC	1 cut(s)	55
BpuMI	CCSGG	1 cut(s)	103
BsaJI	CCNNGG	1 cut(s)	412
BsaXI	ACNNNNNCTCC	4 cut(s)	14, 31, 44, 61
Bsc4I	CCNNNNNNNGG	2 cut(s)	195, 607
BseBI	CCWGG	2 cut(s)	183, 271
BseDI	CCNNGG	1 cut(s)	412
BseGI	GGATG	2 cut(s)	404, 745
BseLI	CCNNNNNNNGG	2 cut(s)	195, 607
BseMII	CTCAG	2 cut(s)	400, 513
BseXI	GCAGC	7 cut(s)	18, 257, 475, 499, 722, 725, 734
BseYI	CCCAGC	1 cut(s)	642
Bsh1236I	CGCG	1 cut(s)	60
BshFI	GGCC	2 cut(s)	57, 436
BsiSI	CCGG	3 cut(s)	102, 222, 462
BslFI	GGGAC	1 cut(s)	118
BslI	CCNNNNNNNGG	2 cut(s)	195, 607
BsmFI	GGGAC	1 cut(s)	118
BsnI	GGCC	2 cut(s)	57, 436
Bsp1407I	TGTACA	1 cut(s)	444
Bsp143I	GATC	4 cut(s)	25, 69, 117, 585
BspACI	CCGC	2 cut(s)	58, 81
BspANI	GGCC	2 cut(s)	57, 436
BspCNI	CTCAG	2 cut(s)	399, 514
BspFNI	CGCG	1 cut(s)	60
BspLI	GGNNCC	2 cut(s)	187, 681
BspOI	GCTAGC	1 cut(s)	354
BspPI	GGATC	1 cut(s)	125
BsrGI	TGTACA	1 cut(s)	444
BssECI	CCNNGG	1 cut(s)	412
BssMI	GATC	4 cut(s)	25, 69, 117, 585
BssT1I	CCWWGG	1 cut(s)	412
Bst2UI	CCWGG	2 cut(s)	183, 271
Bst4CI	ACNGT	3 cut(s)	109, 444, 665
BstAUI	TGTACA	1 cut(s)	444
BstC8I	GCNNGC	3 cut(s)	352, 506, 510
BstDEI	CTNAG	3 cut(s)	386, 516, 522
BstF5I	GGATG	2 cut(s)	404, 745
BstFNI	CGCG	1 cut(s)	60
BstKTI	GATC	4 cut(s)	28, 72, 120, 588
BstMBI	GATC	4 cut(s)	25, 69, 117, 585
BstMWI	GCNNNNNNNGC	6 cut(s)	86, 222, 242, 710, 719, 722
BstNI	CCWGG	2 cut(s)	183, 271
BstSCI	CCNGG	3 cut(s)	101, 181, 269
BstUI	CGCG	1 cut(s)	60
BstV1I	GCAGC	7 cut(s)	18, 257, 475, 499, 722, 725, 734
BstV2I	GAAGAC	1 cut(s)	55
BsuRI	GGCC	2 cut(s)	57, 436
BtgZI	GCGATG	1 cut(s)	197
BtsCI	GGATG	2 cut(s)	404, 745
Cac8I	GCNNGC	3 cut(s)	352, 506, 510
CaiI	CAGNNNCTG	1 cut(s)	236
Cfr13I	GGNCC	2 cut(s)	273, 434
CseI	GACGC	2 cut(s)	49, 153
Csp6I	GTAC	3 cut(s)	76, 369, 445
CviAII	CATG	3 cut(s)	226, 448, 602
CviQI	GTAC	3 cut(s)	76, 369, 445
DdeI	CTNAG	3 cut(s)	386, 516, 522
DpnI	GATC	4 cut(s)	27, 71, 119, 587
DpnII	GATC	4 cut(s)	25, 69, 117, 585
EaeI	YGGCCR	1 cut(s)	55
Eco130I	CCWWGG	1 cut(s)	412
Eco47I	GGWCC	1 cut(s)	273
Eco57I	CTGAAG	1 cut(s)	303
EcoRII	CCWGG	2 cut(s)	181, 269
EcoT14I	CCWWGG	1 cut(s)	412
ErhI	CCWWGG	1 cut(s)	412
FaeI	CATG	3 cut(s)	229, 451, 605
FaqI	GGGAC	1 cut(s)	118
FatI	CATG	3 cut(s)	225, 447, 601
Fnu4HI	GCNGC	9 cut(s)	7, 58, 81, 246, 489, 513, 711, 714, 723
FokI	GGATG	1 cut(s)	411
Fsp4HI	GCNGC	9 cut(s)	7, 58, 81, 246, 489, 513, 711, 714, 723
FspBI	CTAG	3 cut(s)	351, 695, 717
GluI	GCNGC	9 cut(s)	7, 58, 81, 246, 489, 513, 711, 714, 723
GsaI	CCCAGC	1 cut(s)	646
HaeIII	GGCC	2 cut(s)	57, 436
HapII	CCGG	3 cut(s)	102, 222, 462
HgaI	GACGC	2 cut(s)	49, 153
Hin1II	CATG	3 cut(s)	229, 451, 605
HincII	GTYRAC	1 cut(s)	94
HindII	GTYRAC	1 cut(s)	94
HindIII	AAGCTT	1 cut(s)	155
HinfI	GANTC	4 cut(s)	199, 319, 597, 656
HpaII	CCGG	3 cut(s)	102, 222, 462
HphI	GGTGA	2 cut(s)	28, 323
Hpy166II	GTNNAC	3 cut(s)	94, 314, 369
Hpy188I	TCNGA	4 cut(s)	283, 389, 547, 675
Hpy188III	TCNNGA	4 cut(s)	50, 67, 683, 695
Hpy8I	GTNNAC	3 cut(s)	94, 314, 369
Hpy99I	CGWCG	1 cut(s)	169
HpyAV	CCTTC	4 cut(s)	189, 249, 468, 670
HpyCH4III	ACNGT	3 cut(s)	109, 444, 665
HpyCH4IV	ACGT	1 cut(s)	343
HpyCH4V	TGCA	3 cut(s)	361, 491, 743
HpyF10VI	GCNNNNNNNGC	6 cut(s)	86, 222, 242, 710, 719, 722
HpyF3I	CTNAG	3 cut(s)	386, 516, 522
HpySE526I	ACGT	1 cut(s)	343
Hsp92II	CATG	3 cut(s)	229, 451, 605
Kzo9I	GATC	4 cut(s)	25, 69, 117, 585
Lsp1109I	GCAGC	7 cut(s)	18, 257, 475, 499, 722, 725, 734
LweI	GCATC	2 cut(s)	679, 730
MaeI	CTAG	3 cut(s)	351, 695, 717
MaeII	ACGT	1 cut(s)	343
MaeIII	GTNAC	2 cut(s)	20, 34
MalI	GATC	4 cut(s)	27, 71, 119, 587
MboI	GATC	4 cut(s)	25, 69, 117, 585
MboII	GAAGA	3 cut(s)	55, 181, 743
MfeI	CAATTG	1 cut(s)	492
MluCI	AATT	4 cut(s)	261, 492, 548, 629
MnlI	CCTC	3 cut(s)	410, 601, 691
MroXI	GAANNNNTTC	1 cut(s)	318
MseI	TTAA	1 cut(s)	327
MspI	CCGG	3 cut(s)	102, 222, 462
MspR9I	CCNGG	3 cut(s)	103, 183, 271
MunI	CAATTG	1 cut(s)	492
MvaI	CCWGG	2 cut(s)	183, 271
MvnI	CGCG	1 cut(s)	60
MwoI	GCNNNNNNNGC	6 cut(s)	86, 222, 242, 710, 719, 722
NciI	CCSGG	1 cut(s)	103
NdeII	GATC	4 cut(s)	25, 69, 117, 585
NheI	GCTAGC	1 cut(s)	350
NlaIII	CATG	3 cut(s)	229, 451, 605
NlaIV	GGNNCC	2 cut(s)	187, 681
NmuCI	GTSAC	1 cut(s)	34
PcsI	WCGNNNNNNNCGW	1 cut(s)	30
PdmI	GAANNNNTTC	1 cut(s)	318
PfeI	GAWTC	4 cut(s)	199, 319, 597, 656
PflFI	GACNNNGTC	1 cut(s)	277
PfoI	TCCNGGA	1 cut(s)	101
PkrI	GCNGC	9 cut(s)	8, 59, 82, 247, 490, 514, 712, 715, 724
Psp6I	CCWGG	2 cut(s)	181, 269
PspFI	CCCAGC	1 cut(s)	642
PspGI	CCWGG	2 cut(s)	181, 269
PspN4I	GGNNCC	2 cut(s)	187, 681
PspPI	GGNCC	2 cut(s)	273, 434
PstNI	CAGNNNCTG	1 cut(s)	236
PsyI	GACNNNGTC	1 cut(s)	277
RsaI	GTAC	3 cut(s)	77, 370, 446
RsaNI	GTAC	3 cut(s)	76, 369, 445
SaqAI	TTAA	1 cut(s)	327
SatI	GCNGC	9 cut(s)	7, 58, 81, 246, 489, 513, 711, 714, 723
Sau3AI	GATC	4 cut(s)	25, 69, 117, 585
Sau96I	GGNCC	2 cut(s)	273, 434
ScrFI	CCNGG	3 cut(s)	103, 183, 271
SfaNI	GCATC	2 cut(s)	679, 730
SinI	GGWCC	1 cut(s)	273
Sse9I	AATT	4 cut(s)	261, 492, 548, 629
SsiI	CCGC	2 cut(s)	58, 81
SspMI	CTAG	3 cut(s)	351, 695, 717
StyD4I	CCNGG	3 cut(s)	101, 181, 269
StyI	CCWWGG	1 cut(s)	412
TaaI	ACNGT	3 cut(s)	109, 444, 665
TaiI	ACGT	1 cut(s)	346
TaqI	TCGA	2 cut(s)	72, 167
TasI	AATT	4 cut(s)	261, 492, 548, 629
TatI	WGTACW	1 cut(s)	444
TauI	GCSGC	2 cut(s)	60, 83
TfiI	GAWTC	4 cut(s)	199, 319, 597, 656
Tru1I	TTAA	1 cut(s)	327
Tru9I	TTAA	1 cut(s)	327
TseFI	GTSAC	1 cut(s)	34
TseI	GCWGC	7 cut(s)	6, 245, 488, 512, 710, 713, 722
Tsp45I	GTSAC	1 cut(s)	34
TspDTI	ATGAA	4 cut(s)	191, 200, 312, 669
TspGWI	ACGGA	1 cut(s)	22
Tth111I	GACNNNGTC	1 cut(s)	277
VpaK11BI	GGWCC	1 cut(s)	273
XbaI	TCTAGA	1 cut(s)	694
XmnI	GAANNNNTTC	1 cut(s)	318
XspI	CTAG	3 cut(s)	351, 695, 717

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.