Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr1

Orthogroup ID

OG0014407

Physical Location & Seq

Genomic Coordinates Forward (+)

40550587 .. 40551336

Gene Structure 750 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000002841

Sequence Viewer

CDS Protein Promoter (2k)

Length: 750 bp

ATGAGTAGCATAGGAACAGGCTACGATCTCTCAGTCACCACATTTTCTCCTGATGGCCGTGTATTCCAGATTGAGTACGCAACCAAAGCTGTTGACAACTCCGGGACTGTTATTGGGATCAAATGCAAGGATGGAGTTGTTATGGGTGTGGAAAAGCTCATTGCATCAAAGATGATGCTGCCTGGTTCCAACAGAAGAATTCATTCTGTTCATCGCCACTCTGGCATGGCAGTGGCAGGATTAGCAGCTGATGGCAGGCAGATTGTTGCCAGGACAAAGTCGGAAGCTACCAACTATGAAAATGTGTACGGTGATCAGATTCCTATCAAGGAACTTGCTGAACGTGTTGCCAGTTATGTGCATCTGTGCACACTATATTGGTGGCTCAGACCTTTTGGATGTGGGATCATCCTTGGAGGTTATGACAGAGATGGGCCACAATTGTACATGGTTGAACCTTCTGGTGTTTCTTACAGGTATTTTGGTGCAGCAATTGGGAAGGGAAGGCAGGCTGCTAAAACAGAGATTGAAAAGTTGAAGCTTTCAGAATTGACTTGTCGGCAAGGTGTTATTGAAGTAGCAAAGATCATTTATGGAATACACGATGAGGCGAAGGACAAAGACTTTGAATTGGAAATGAGCTGGGTCTGTGATGAATCGAACCGTCTGCATCAGAAGGTTCCAGATGAGCTTCTAGAGGAAGCAAAGGTAGCGGCAAGAACAGCATTGGAAGAAATGGATGCAGACTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000502 GO:0005575 GO:0005576 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005773 GO:0005774 GO:0005829 GO:0005839 GO:0006950 GO:0008150 GO:0009266 GO:0009409 GO:0009628 GO:0010035 GO:0010038 GO:0016020 GO:0019773 GO:0031090 GO:0032991 GO:0042221 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0046686 GO:0048046 GO:0050896 GO:0098588 GO:0098805 GO:1902494 GO:1905368 GO:1905369

KEGG Pathways

Metabolic & Signaling

ko03050 map03050

Pfam Domains

Protein Families

Proteasome Proteasome_A_N

Protein Analysis

250

Amino Acids

27.51

Weight (kDa)

5.75

Isoelectric Point (pI)

36.95

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Proteasome_A_N	PF10584	8 - 30	7.8e-14	Proteasome subunit A N-terminal signature
Proteasome	PF00227	31 - 216	5.4e-51	Proteasome subunit

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0014407)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G27020 AT2G27020
fragaria_vesca	FvH4_5g23670
malus_domestica	MD14G1092100.v1.1
prunus_persica	Prupe.7G022800_v2.0.a1 Prupe.7G022800_v2.0.a1
pyrus_communis	pycom14g08930 pycom14g08970
rosa_chinensis	RchiOBHm_Chr7g0212971
rosa_laevigata	RLG00000002841
rosa_multiflora	Rmu_co8304723.1_g000001
rosa_roxburghii	Rroxscaffold_3G00246370
rosa_samantha	Rh7AG269800 Rh7BG265200 Rh7CG289000 Rh7DG277900
rosa_wichuraiana	Rw7G023440

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	713
AclWI	GGATC	2 cut(s)	125, 413
AcoI	YGGCCR	1 cut(s)	55
AcsI	RAATTY	1 cut(s)	198
AfaI	GTAC	3 cut(s)	77, 308, 446
AflIII	ACRYGT	1 cut(s)	343
AgsI	TTSAA	5 cut(s)	455, 530, 538, 575, 629
AjnI	CCWGG	2 cut(s)	181, 269
AluBI	AGCT	7 cut(s)	89, 157, 248, 287, 541, 642, 691
AluI	AGCT	7 cut(s)	89, 157, 248, 287, 541, 642, 691
Alw21I	GWGCWC	1 cut(s)	371
Alw44I	GTGCAC	1 cut(s)	367
AlwI	GGATC	2 cut(s)	125, 413
AoxI	GGCC	2 cut(s)	55, 434
ApaLI	GTGCAC	1 cut(s)	367
ApeKI	GCWGC	4 cut(s)	178, 245, 488, 512
ApoI	RAATTY	1 cut(s)	198
ArsI	GACNNNNNNTTYG	2 cut(s)	608, 640
Asp700I	GAANNNNTTC	1 cut(s)	202
AspS9I	GGNCC	1 cut(s)	434
AsuC2I	CCSGG	1 cut(s)	103
AsuHPI	GGTGA	2 cut(s)	28, 323
BaeGI	GKGCMC	1 cut(s)	371
Bbv12I	GWGCWC	1 cut(s)	371
BbvI	GCAGC	4 cut(s)	165, 257, 499, 500
BccI	CCATC	4 cut(s)	47, 125, 245, 425
BceAI	ACGGC	1 cut(s)	42
BcgI	CGANNNNNNTGC	2 cut(s)	649, 683
BciT130I	CCWGG	2 cut(s)	183, 271
BclI	TGATCA	1 cut(s)	313
BcnI	CCSGG	1 cut(s)	103
BfaI	CTAG	1 cut(s)	695
BglI	GCCNNNNNGGC	1 cut(s)	222
BisI	GCNGC	5 cut(s)	179, 246, 489, 513, 714
BlsI	GCNGC	5 cut(s)	180, 247, 490, 514, 715
Bme1390I	CCNGG	3 cut(s)	103, 183, 271
BmgT120I	GGNCC	1 cut(s)	434
BmiI	GGNNCC	2 cut(s)	187, 681
BmrFI	CCNGG	3 cut(s)	103, 183, 271
BmsI	GCATC	5 cut(s)	165, 173, 370, 679, 730
BpuMI	CCSGG	1 cut(s)	103
BsaBI	GATNNNNATC	1 cut(s)	323
BsaJI	CCNNGG	1 cut(s)	412
BsaXI	ACNNNNNCTCC	2 cut(s)	31, 61
Bse1I	ACTGG	1 cut(s)	351
Bse3DI	GCAATG	1 cut(s)	159
Bse8I	GATNNNNATC	1 cut(s)	323
BseBI	CCWGG	2 cut(s)	183, 271
BseDI	CCNNGG	1 cut(s)	412
BseGI	GGATG	4 cut(s)	136, 404, 408, 745
BseJI	GATNNNNATC	1 cut(s)	323
BseMI	GCAATG	1 cut(s)	159
BseMII	CTCAG	2 cut(s)	45, 400
BseNI	ACTGG	1 cut(s)	351
BseSI	GKGCMC	1 cut(s)	371
BseXI	GCAGC	4 cut(s)	165, 257, 499, 500
BseYI	CCCAGC	1 cut(s)	642
BsgI	GTGCAG	1 cut(s)	507
BshFI	GGCC	2 cut(s)	57, 436
BsiHKAI	GWGCWC	1 cut(s)	371
BsiSI	CCGG	1 cut(s)	102
BslFI	GGGAC	1 cut(s)	118
BsmFI	GGGAC	1 cut(s)	118
BsnI	GGCC	2 cut(s)	57, 436
Bsp1286I	GDGCHC	1 cut(s)	371
Bsp1407I	TGTACA	1 cut(s)	444
Bsp143I	GATC	5 cut(s)	25, 117, 313, 405, 585
BspACI	CCGC	1 cut(s)	713
BspANI	GGCC	2 cut(s)	57, 436
BspCNI	CTCAG	2 cut(s)	44, 399
BspLI	GGNNCC	2 cut(s)	187, 681
BspPI	GGATC	2 cut(s)	125, 413
BsrDI	GCAATG	1 cut(s)	159
BsrGI	TGTACA	1 cut(s)	444
BsrI	ACTGG	1 cut(s)	351
BssECI	CCNNGG	1 cut(s)	412
BssMI	GATC	5 cut(s)	25, 117, 313, 405, 585
BssT1I	CCWWGG	1 cut(s)	412
Bst2UI	CCWGG	2 cut(s)	183, 271
Bst4CI	ACNGT	3 cut(s)	109, 311, 665
BstAUI	TGTACA	1 cut(s)	444
BstC8I	GCNNGC	2 cut(s)	257, 510
BstDEI	CTNAG	2 cut(s)	31, 386
BstF5I	GGATG	4 cut(s)	136, 404, 408, 745
BstKTI	GATC	5 cut(s)	28, 120, 316, 408, 588
BstMBI	GATC	5 cut(s)	25, 117, 313, 405, 585
BstMWI	GCNNNNNNNGC	5 cut(s)	86, 222, 242, 710, 722
BstNI	CCWGG	2 cut(s)	183, 271
BstSCI	CCNGG	3 cut(s)	101, 181, 269
BstSLI	GKGCMC	1 cut(s)	371
BstV1I	GCAGC	4 cut(s)	165, 257, 499, 500
BsuRI	GGCC	2 cut(s)	57, 436
BtgZI	GCGATG	1 cut(s)	197
BtsCI	GGATG	4 cut(s)	136, 404, 408, 745
BtsI	GCAGTG	1 cut(s)	237
BtsIMutI	CAGTG	1 cut(s)	237
Cac8I	GCNNGC	2 cut(s)	257, 510
Cfr13I	GGNCC	1 cut(s)	434
Csp6I	GTAC	3 cut(s)	76, 307, 445
CviAII	CATG	2 cut(s)	226, 448
CviQI	GTAC	3 cut(s)	76, 307, 445
DdeI	CTNAG	2 cut(s)	31, 386
DpnI	GATC	5 cut(s)	27, 119, 315, 407, 587
DpnII	GATC	5 cut(s)	25, 117, 313, 405, 585
EaeI	YGGCCR	1 cut(s)	55
Eco130I	CCWWGG	1 cut(s)	412
EcoRI	GAATTC	1 cut(s)	198
EcoRII	CCWGG	2 cut(s)	181, 269
EcoT14I	CCWWGG	1 cut(s)	412
ErhI	CCWWGG	1 cut(s)	412
FaeI	CATG	2 cut(s)	229, 451
FaiI	YATR	9 cut(s)	11, 143, 227, 297, 357, 376, 423, 449, 594
FaqI	GGGAC	1 cut(s)	118
FatI	CATG	2 cut(s)	225, 447
FbaI	TGATCA	1 cut(s)	313
Fnu4HI	GCNGC	5 cut(s)	179, 246, 489, 513, 714
FokI	GGATG	3 cut(s)	143, 395, 411
Fsp4HI	GCNGC	5 cut(s)	179, 246, 489, 513, 714
FspBI	CTAG	1 cut(s)	695
GluI	GCNGC	5 cut(s)	179, 246, 489, 513, 714
GsaI	CCCAGC	1 cut(s)	646
HaeIII	GGCC	2 cut(s)	57, 436
HapII	CCGG	1 cut(s)	102
Hin1II	CATG	2 cut(s)	229, 451
HincII	GTYRAC	1 cut(s)	94
HindII	GTYRAC	1 cut(s)	94
HindIII	AAGCTT	1 cut(s)	539
HinfI	GANTC	2 cut(s)	319, 656
HpaII	CCGG	1 cut(s)	102
HphI	GGTGA	2 cut(s)	28, 323
Hpy166II	GTNNAC	3 cut(s)	94, 307, 369
Hpy188I	TCNGA	5 cut(s)	283, 318, 389, 547, 675
Hpy188III	TCNNGA	4 cut(s)	50, 67, 683, 695
Hpy8I	GTNNAC	3 cut(s)	94, 307, 369
HpyAV	CCTTC	5 cut(s)	468, 493, 498, 607, 670
HpyCH4III	ACNGT	3 cut(s)	109, 311, 665
HpyCH4IV	ACGT	1 cut(s)	343
HpyCH4V	TGCA	7 cut(s)	126, 164, 361, 369, 488, 670, 743
HpyF10VI	GCNNNNNNNGC	5 cut(s)	86, 222, 242, 710, 722
HpyF3I	CTNAG	2 cut(s)	31, 386
HpySE526I	ACGT	1 cut(s)	343
Hsp92II	CATG	2 cut(s)	229, 451
Ksp22I	TGATCA	1 cut(s)	313
Kzo9I	GATC	5 cut(s)	25, 117, 313, 405, 585
Lsp1109I	GCAGC	4 cut(s)	165, 257, 499, 500
LweI	GCATC	5 cut(s)	165, 173, 370, 679, 730
MaeI	CTAG	1 cut(s)	695
MaeII	ACGT	1 cut(s)	343
MaeIII	GTNAC	1 cut(s)	34
MalI	GATC	5 cut(s)	27, 119, 315, 407, 587
MboI	GATC	5 cut(s)	25, 117, 313, 405, 585
MboII	GAAGA	2 cut(s)	207, 743
MfeI	CAATTG	2 cut(s)	440, 492
MhlI	GDGCHC	1 cut(s)	371
MluCI	AATT	5 cut(s)	198, 440, 492, 548, 629
MmeI	TCCRAC	2 cut(s)	213, 261
MnlI	CCTC	3 cut(s)	410, 601, 691
MroXI	GAANNNNTTC	1 cut(s)	202
MslI	CAYNNNNRTG	1 cut(s)	230
MspA1I	CMGCKG	1 cut(s)	248
MspI	CCGG	1 cut(s)	102
MspR9I	CCNGG	3 cut(s)	103, 183, 271
MunI	CAATTG	2 cut(s)	440, 492
MvaI	CCWGG	2 cut(s)	183, 271
MwoI	GCNNNNNNNGC	5 cut(s)	86, 222, 242, 710, 722
NciI	CCSGG	1 cut(s)	103
NdeII	GATC	5 cut(s)	25, 117, 313, 405, 585
NlaIII	CATG	2 cut(s)	229, 451
NlaIV	GGNNCC	2 cut(s)	187, 681
NmuCI	GTSAC	1 cut(s)	34
PdmI	GAANNNNTTC	1 cut(s)	202
PfeI	GAWTC	2 cut(s)	319, 656
PflFI	GACNNNGTC	1 cut(s)	277
PfoI	TCCNGGA	1 cut(s)	101
PkrI	GCNGC	5 cut(s)	180, 247, 490, 514, 715
Psp6I	CCWGG	2 cut(s)	181, 269
PspFI	CCCAGC	1 cut(s)	642
PspGI	CCWGG	2 cut(s)	181, 269
PspN4I	GGNNCC	2 cut(s)	187, 681
PspPI	GGNCC	1 cut(s)	434
PsyI	GACNNNGTC	1 cut(s)	277
PvuII	CAGCTG	1 cut(s)	248
RsaI	GTAC	3 cut(s)	77, 308, 446
RsaNI	GTAC	3 cut(s)	76, 307, 445
RseI	CAYNNNNRTG	1 cut(s)	230
SatI	GCNGC	5 cut(s)	179, 246, 489, 513, 714
Sau3AI	GATC	5 cut(s)	25, 117, 313, 405, 585
Sau96I	GGNCC	1 cut(s)	434
ScrFI	CCNGG	3 cut(s)	103, 183, 271
SduI	GDGCHC	1 cut(s)	371
SfaNI	GCATC	5 cut(s)	165, 173, 370, 679, 730
SmiMI	CAYNNNNRTG	1 cut(s)	230
Sse9I	AATT	5 cut(s)	198, 440, 492, 548, 629
SsiI	CCGC	1 cut(s)	713
SspMI	CTAG	1 cut(s)	695
StyD4I	CCNGG	3 cut(s)	101, 181, 269
StyI	CCWWGG	1 cut(s)	412
TaaI	ACNGT	3 cut(s)	109, 311, 665
TaiI	ACGT	1 cut(s)	346
TaqI	TCGA	1 cut(s)	659
TasI	AATT	5 cut(s)	198, 440, 492, 548, 629
TatI	WGTACW	1 cut(s)	444
TauI	GCSGC	1 cut(s)	716
TfiI	GAWTC	2 cut(s)	319, 656
TscAI	CASTG	1 cut(s)	237
TseFI	GTSAC	1 cut(s)	34
TseI	GCWGC	4 cut(s)	178, 245, 488, 512
Tsp45I	GTSAC	1 cut(s)	34
TspDTI	ATGAA	4 cut(s)	191, 200, 312, 669
TspRI	CASTG	1 cut(s)	237
Tth111I	GACNNNGTC	1 cut(s)	277
VneI	GTGCAC	1 cut(s)	367
XapI	RAATTY	1 cut(s)	198
XbaI	TCTAGA	1 cut(s)	694
XmnI	GAANNNNTTC	1 cut(s)	202
XspI	CTAG	1 cut(s)	695

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.