Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr14

Orthogroup ID

OG0015275

Physical Location & Seq

Genomic Coordinates Forward (+)

24675010 .. 24679007

Gene Structure 3998 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD14G1152700.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2208 bp

ATGAGTACGCTCAGACGACGCCTCCGCCTCAGCTACTCTTCCGACGAAGAAGAACAACCGCCGCCGCCGCCATCACAACAACAGCAAAGTGAAGAACCTGGGCCACAATCGCATACTGTCACTCACCCGCCCGTTACCCTAGACACGCCATGCCCTTACCCCTCCGATCCACTCCCAGTCACCTCCTCCTCCTCCTCCGAAGAATTCATCGATGTCTCCGACAATCTGTCGTCGCCGTCACCTCCGCCGGCTCCGGTACTCGAACCCGATACTAGGCAATATTCTCCTCCGCTGGCTCCGGCACCTGAACCTGTTTCCCGGTCACATTCTCCTCCCATGGCTCAGGCACCGGAACCCCAAAATTGGCCACCTCCACAGAGATACGATGGCTGCCCAATAAGCGAACATCTCCAGAGGTTAGGGCTAAGGCTAAAGAGGGAGTGGCTCGATGCTTGCGTCCATGGACTCCGGCAATTCGTACCGGGATTTCAAAACTTCGATGTGGAGACGAAGGCGAAGCTCTGCTTCGAGCAGTTTCTGGTTTCGGATATGAATCGAACTGGCGGCGGCGTGCTTCCGGAAAATGTAGCTTCTCTTCATCTCGTTGATCTTCCTGGACCCTATGTTTTGCAGGTTGATGAGATTGTTAACATCAGCAATCCTCTGAAGAATAGGTATCAGAAAACTGCTGTTGGGCTCAAGAGGTGCCTCAAATTGTCGTTGACAGACGGTGTTCAACGCGTCATTGCTATGGAATACAGGCCTATTCAGGCCCTAGAAGCTTTGGCTCCTGCTGGGTTGAAGATTGCTATATGTAATGTGCATATACGCCACGGGCTTCTTATGCTGGTCCCTGAATGTATTGAAGTTCTAGGAGGATTAGTTGAGGAACTCGATGCTGCGCGTCAACGGCTTGTTGAAGAAGTAAATAAGCCCCCAAGAGGAAACAGGACCAGGAATGGAGTAGTTCCTCCTCTATCGACTAGGTTAGCTCTTGCTGCATGGCCTCCCAATACTGTTAATGCTGCTGGACACACCAATAATTCAACAATGGAAGCCCCGACCTCCGTTCAAGCACCCAACCAAGGTGCTACTTTCTCTGTATCTGCTAGAAATACCAGCTCTGTATCTTCTAGAAACACCATCTCTGTATCTGGTAGAACTACCAGCTCTGTATGTTCTAGAAATAGCAGCCCAGTGACTGCTGAAGAGTCTACTGTTCCTCTCAGTGGACAACATTCTGTTGTTAACCCATCATCTACTGGTGGCCGTGGTGTCGACGAGATGCCTATGGATACCACTCCCTATAGCAGAAGAAATGCTATTCCTAACCCATTATCGGATGATTTTGGTGTTGAGAATCTCCATTTAAATACAGTTCAGTCTAGTGTTCGTCATAGCAGGGAAAGTCGAGTACCTGAAAATGCCATTCCTAACCCATCCTTTGAGGATGCTGTTGAAGATATTGAAATGGATGCTGTTCATTTTGGGGGAGAAAATCATACCAGAGATTCAATTTTGAATGATGAGGATATCACTATGATTGATGAGAATGAAACTCATAGGGCTTGCGCATCCTCAGACGCTGTTTTGAATGATGAGGACACCGATGTTGTTAATGAATTCGACCGCCCAGAAATACTATCTGGAGACCGCGAACGTCCTTTCGATTACCTATCTAGTTTGTCAACCAAGTTGGTTACAATGAACATTCGTTCTATTCAGGGGAAGGTTAAGTGTGTTTTGACTGGTGTGAATAAGTTCCAATACACAGGTGACATGTACGAGCTTGGAGCGTATGTTGATGATGGGACTCTCATTTCTGAAATTCTCATTGATCACAATGTTGTACAGAATGCGATAGGTCATTCTCCTGCGGAAGCCAGAGCTGCTCTTTCTTCTCCAGACAATACAGAAGTTCGGAATATGAAGGCAAAAATGAGGCAGTTTCAAAAATTCTTAACGAATTTCGAGGGCATAATGCTTATAGAGATGAGATTGCATGATCTTCCAATTGCCATTGAGATGACGCAGGGTTGTGCTGAATCTGATGCGTGGTTGCTTTTGAGGAGACTAAAGGCCTCCTCTCCAGCTCGGACATCACAGCATGCCTCCGCTGCCGCTCCAACATCACGGCATGCTTCCCCTCCTGGTCGAGCGTCACAACATCTCTCCTCGCAGTCGTACCCCATTGAGATATCCCCCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000280 GO:0000712 GO:0006139 GO:0006259 GO:0006310 GO:0006725 GO:0006807 GO:0006996 GO:0007049 GO:0007059 GO:0007127 GO:0007131 GO:0008150 GO:0008152 GO:0009987 GO:0016043 GO:0022402 GO:0022414 GO:0034641 GO:0035825 GO:0043170 GO:0044237 GO:0044238 GO:0044260 GO:0045132 GO:0046483 GO:0048285 GO:0051304 GO:0051307 GO:0051321 GO:0061982 GO:0071704 GO:0071840 GO:0090304 GO:0098813 GO:0140013 GO:1901360 GO:1903046

KEGG Pathways

Metabolic & Signaling

ko03460 map03460

Pfam Domains

Protein Families

RMI1_C RMI1_N

Protein Analysis

736

Amino Acids

80.4

Weight (kDa)

5.33

Isoelectric Point (pI)

64.18

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
RMI1_N_N	PF21000	139 - 185	3e-06	RMI1, N-terminal helical domain
RMI1_N_C	PF08585	192 - 303	2.1e-25	RMI1, N-terminal OB-fold domain
RMI1_C	PF16099	553 - 692	1e-32	Recq-mediated genome instability protein 1, C-terminal OB-fold

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Orthologous Genes (Group: OG0015275)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G63540 AT5G63540
fragaria_vesca	FvH4_1g26610
malus_domestica	MD14G1152700.v1.1
prunus_persica	Prupe.5G147700_v2.0.a1
pyrus_communis	pycom14g12710
rosa_chinensis	RchiOBHm_Chr7g0189541
rosa_laevigata	RLG00000004602
rosa_multiflora	Rmu_sc0001924.1_g000011
rosa_roxburghii	Rroxscaffold_3G00265320
rosa_rugosa	Rorug06G0498900
rosa_samantha	Rh7AG103800 Rh7BG106500 Rh7CG108600 Rh7DG105900
rosa_wichuraiana	Rw7G008960

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	1573
Acc36I	ACCTGC	1 cut(s)	622
AccB1I	GGYRCC	3 cut(s)	301, 346, 705
AccBSI	CCGCTC	1 cut(s)	2123
AccI	GTMKAC	2 cut(s)	1214, 1278
AccII	CGCG	3 cut(s)	741, 904, 1656
AccIII	TCCGGA	1 cut(s)	577
AclWI	GGATC	1 cut(s)	161
AcoI	YGGCCR	2 cut(s)	365, 1267
AcsI	RAATTY	5 cut(s)	203, 1622, 1827, 1955, 1966
AcuI	CTGAAG	2 cut(s)	686, 1227
AcyI	GRCGYC	1 cut(s)	19
AfaI	GTAC	7 cut(s)	7, 258, 480, 1416, 1784, 1851, 2186
AfiI	CCNNNNNNNGG	6 cut(s)	273, 363, 941, 1085, 1229, 1339
AflIII	ACRYGT	2 cut(s)	739, 1779
AhdI	GACNNNNNGTC	1 cut(s)	226
AjnI	CCWGG	4 cut(s)	97, 613, 953, 2149
Alw26I	GTCTC	4 cut(s)	220, 500, 1644, 2065
AlwI	GGATC	1 cut(s)	161
AlwNI	CAGNNNCTG	3 cut(s)	538, 1202, 1586
Aor13HI	TCCGGA	1 cut(s)	577
AoxI	GGCC	7 cut(s)	101, 365, 761, 771, 1004, 1267, 2079
ApeKI	GCWGC	7 cut(s)	390, 899, 998, 1025, 1191, 1889, 2117
ApoI	RAATTY	5 cut(s)	203, 1622, 1827, 1955, 1966
Asp700I	GAANNNNTTC	1 cut(s)	1760
AspLEI	GCGC	2 cut(s)	904, 1574
AspS9I	GGNCC	5 cut(s)	101, 617, 772, 850, 951
AsuC2I	CCSGG	2 cut(s)	319, 483
AsuHPI	GGTGA	4 cut(s)	116, 172, 231, 1787
AvaII	GGWCC	3 cut(s)	617, 850, 951
BalI	TGGCCA	1 cut(s)	367
BanI	GGYRCC	3 cut(s)	301, 346, 705
BanII	GRGCYC	1 cut(s)	699
BarI	GAAGNNNNNNTAC	2 cut(s)	579, 611
BbvCI	CCTCAGC	1 cut(s)	29
BbvI	GCAGC	7 cut(s)	377, 886, 985, 1012, 1203, 1876, 2104
BccI	CCATC	6 cut(s)	79, 380, 1151, 1261, 1447, 1802
BceAI	ACGGC	4 cut(s)	220, 926, 1254, 2150
BciT130I	CCWGG	4 cut(s)	99, 615, 955, 2151
BciVI	GTATCC	1 cut(s)	1288
BclI	TGATCA	1 cut(s)	1837
BcnI	CCSGG	2 cut(s)	319, 483
BcoDI	GTCTC	4 cut(s)	220, 500, 1644, 2065
BfmI	CTRYAG	1 cut(s)	1306
BfuAI	ACCTGC	1 cut(s)	622
BfuI	GTATCC	1 cut(s)	1288
Bme1390I	CCNGG	6 cut(s)	99, 319, 483, 615, 955, 2151
Bme18I	GGWCC	3 cut(s)	617, 850, 951
BmeRI	GACNNNNNGTC	1 cut(s)	226
BmgT120I	GGNCC	5 cut(s)	101, 617, 772, 850, 951
BmiI	GGNNCC	9 cut(s)	252, 297, 303, 348, 354, 619, 707, 789, 852
BmrFI	CCNGG	6 cut(s)	99, 319, 483, 615, 955, 2151
BmrI	ACTGGG	2 cut(s)	170, 1190
BmsI	GCATC	7 cut(s)	439, 886, 1275, 1441, 1465, 1583, 2041
BmuI	ACTGGG	2 cut(s)	170, 1190
BpmI	CTGGAG	4 cut(s)	395, 1668, 1887, 2073
Bpu10I	CCTNAGC	3 cut(s)	29, 342, 425
BpuEI	CTTGAG	1 cut(s)	683
BpuMI	CCSGG	2 cut(s)	319, 483
Bsa29I	ATCGAT	1 cut(s)	210
BsaBI	GATNNNNATC	1 cut(s)	552
BsaHI	GRCGYC	1 cut(s)	19
BsaI	GGTCTC	1 cut(s)	1644
BsaJI	CCNNGG	6 cut(s)	98, 336, 460, 832, 1084, 1270
BsaWI	WCCGGW	3 cut(s)	253, 349, 577
BsaXI	ACNNNNNCTCC	6 cut(s)	6, 36, 867, 897, 1785, 1815
Bsc4I	CCNNNNNNNGG	6 cut(s)	273, 363, 941, 1085, 1229, 1339
Bse118I	RCCGGY	1 cut(s)	247
Bse1I	ACTGG	5 cut(s)	176, 565, 1196, 1267, 1753
Bse3DI	GCAATG	1 cut(s)	744
Bse8I	GATNNNNATC	1 cut(s)	552
BseAI	TCCGGA	1 cut(s)	577
BseBI	CCWGG	4 cut(s)	99, 615, 955, 2151
BseCI	ATCGAT	1 cut(s)	210
BseDI	CCNNGG	6 cut(s)	98, 336, 460, 832, 1084, 1270
BseGI	GGATG	5 cut(s)	1348, 1439, 1456, 1480, 1574
BseJI	GATNNNNATC	1 cut(s)	552
BseLI	CCNNNNNNNGG	6 cut(s)	273, 363, 941, 1085, 1229, 1339
BseMI	GCAATG	1 cut(s)	744
BseMII	CTCAG	5 cut(s)	25, 43, 356, 1240, 1593
BseNI	ACTGG	5 cut(s)	176, 565, 1196, 1267, 1753
BseXI	GCAGC	7 cut(s)	377, 886, 985, 1012, 1203, 1876, 2104
BseYI	CCCAGC	1 cut(s)	794
Bsh1236I	CGCG	3 cut(s)	741, 904, 1656
Bsh1285I	CGRYCG	1 cut(s)	1630
BshFI	GGCC	7 cut(s)	103, 367, 763, 773, 1006, 1269, 2081
BshNI	GGYRCC	3 cut(s)	301, 346, 705
BshVI	ATCGAT	1 cut(s)	210
BsiEI	CGRYCG	1 cut(s)	1630
BsiSI	CCGG	8 cut(s)	248, 254, 299, 319, 350, 469, 482, 578
BslFI	GGGAC	2 cut(s)	836, 1825
BslI	CCNNNNNNNGG	6 cut(s)	273, 363, 941, 1085, 1229, 1339
BsmAI	GTCTC	4 cut(s)	220, 500, 1644, 2065
BsmBI	CGTCTC	1 cut(s)	500
BsmFI	GGGAC	2 cut(s)	836, 1825
BsmI	GAATGC	1 cut(s)	1861
BsnI	GGCC	7 cut(s)	103, 367, 763, 773, 1006, 1269, 2081
Bso31I	GGTCTC	1 cut(s)	1644
Bsp1286I	GDGCHC	1 cut(s)	699
Bsp13I	TCCGGA	1 cut(s)	577
Bsp1407I	TGTACA	1 cut(s)	1849
Bsp143I	GATC	4 cut(s)	166, 607, 1837, 2005
Bsp19I	CCATGG	2 cut(s)	336, 460
BspANI	GGCC	7 cut(s)	103, 367, 763, 773, 1006, 1269, 2081
BspCNI	CTCAG	5 cut(s)	24, 42, 355, 1239, 1592
BspDI	ATCGAT	1 cut(s)	210
BspEI	TCCGGA	1 cut(s)	577
BspFNI	CGCG	3 cut(s)	741, 904, 1656
BspLI	GGNNCC	9 cut(s)	252, 297, 303, 348, 354, 619, 707, 789, 852
BspMI	ACCTGC	1 cut(s)	622
BspPI	GGATC	1 cut(s)	161
BspT107I	GGYRCC	3 cut(s)	301, 346, 705
BspTNI	GGTCTC	1 cut(s)	1644
BsrBI	CCGCTC	1 cut(s)	2123
BsrDI	GCAATG	1 cut(s)	744
BsrFI	RCCGGY	1 cut(s)	247
BsrGI	TGTACA	1 cut(s)	1849
BsrI	ACTGG	5 cut(s)	176, 565, 1196, 1267, 1753
BssAI	RCCGGY	1 cut(s)	247
BssECI	CCNNGG	6 cut(s)	98, 336, 460, 832, 1084, 1270
BssMI	GATC	4 cut(s)	166, 607, 1837, 2005
BssNI	GRCGYC	1 cut(s)	19
BssT1I	CCWWGG	3 cut(s)	336, 460, 1084
Bst2UI	CCWGG	4 cut(s)	99, 615, 955, 2151
Bst4CI	ACNGT	5 cut(s)	118, 731, 1018, 1219, 1378
Bst6I	CTCTTC	3 cut(s)	43, 600, 1203
BstACI	GRCGYC	1 cut(s)	19
BstAUI	TGTACA	1 cut(s)	1849
BstC8I	GCNNGC	7 cut(s)	249, 294, 454, 572, 1570, 2109, 2139
BstDEI	CTNAG	6 cut(s)	11, 29, 342, 425, 1226, 1579
BstDSI	CCRYGG	4 cut(s)	336, 460, 832, 1270
BstF5I	GGATG	5 cut(s)	1348, 1439, 1456, 1480, 1574
BstFNI	CGCG	3 cut(s)	741, 904, 1656
BstHHI	GCGC	2 cut(s)	904, 1574
BstKTI	GATC	4 cut(s)	169, 610, 1840, 2008
BstMAI	GTCTC	4 cut(s)	220, 500, 1644, 2065
BstMBI	GATC	4 cut(s)	166, 607, 1837, 2005
BstMCI	CGRYCG	1 cut(s)	1630
BstMWI	GCNNNNNNNGC	9 cut(s)	67, 109, 399, 779, 844, 910, 998, 1889, 2117
BstNI	CCWGG	4 cut(s)	99, 615, 955, 2151
BstNSI	RCATGY	3 cut(s)	1783, 2111, 2141
BstSCI	CCNGG	6 cut(s)	97, 317, 481, 613, 953, 2149
BstSFI	CTRYAG	1 cut(s)	1306
BstUI	CGCG	3 cut(s)	741, 904, 1656
BstV1I	GCAGC	7 cut(s)	377, 886, 985, 1012, 1203, 1876, 2104
Bsu15I	ATCGAT	1 cut(s)	210
BsuI	GTATCC	1 cut(s)	1288
BsuRI	GGCC	7 cut(s)	103, 367, 763, 773, 1006, 1269, 2081
BsuTUI	ATCGAT	1 cut(s)	210
BtgI	CCRYGG	4 cut(s)	336, 460, 832, 1270
BtsCI	GGATG	5 cut(s)	1348, 1439, 1456, 1480, 1574
BtsIMutI	CAGTG	2 cut(s)	1203, 1234
BveI	ACCTGC	1 cut(s)	622
Cac8I	GCNNGC	7 cut(s)	249, 294, 454, 572, 1570, 2109, 2139
CaiI	CAGNNNCTG	3 cut(s)	538, 1202, 1586
CfoI	GCGC	2 cut(s)	904, 1574
Cfr10I	RCCGGY	1 cut(s)	247
Cfr13I	GGNCC	5 cut(s)	101, 617, 772, 850, 951
ClaI	ATCGAT	1 cut(s)	210
CseI	GACGC	7 cut(s)	27, 445, 730, 893, 1592, 2038, 2148
Csp6I	GTAC	7 cut(s)	6, 257, 479, 1415, 1783, 1850, 2185
CviAII	CATG	8 cut(s)	150, 337, 461, 1002, 1780, 2003, 2108, 2138
CviQI	GTAC	7 cut(s)	6, 257, 479, 1415, 1783, 1850, 2185
DdeI	CTNAG	6 cut(s)	11, 29, 342, 425, 1226, 1579
DpnI	GATC	4 cut(s)	168, 609, 1839, 2007
DpnII	GATC	4 cut(s)	166, 607, 1837, 2005
DraI	TTTAAA	1 cut(s)	1371
DriI	GACNNNNNGTC	1 cut(s)	226
EaeI	YGGCCR	2 cut(s)	365, 1267
Eam1104I	CTCTTC	3 cut(s)	43, 600, 1203
Eam1105I	GACNNNNNGTC	1 cut(s)	226
EarI	CTCTTC	3 cut(s)	43, 600, 1203
EciI	GGCGGA	2 cut(s)	14, 234
Eco130I	CCWWGG	3 cut(s)	336, 460, 1084
Eco147I	AGGCCT	2 cut(s)	763, 2081
Eco24I	GRGCYC	1 cut(s)	699
Eco31I	GGTCTC	1 cut(s)	1644
Eco32I	GATATC	2 cut(s)	1534, 2199
Eco47I	GGWCC	3 cut(s)	617, 850, 951
Eco57I	CTGAAG	2 cut(s)	686, 1227
EcoO109I	RGGNCCY	1 cut(s)	772
EcoRI	GAATTC	2 cut(s)	203, 1622
EcoRII	CCWGG	4 cut(s)	97, 613, 953, 2149
EcoRV	GATATC	2 cut(s)	1534, 2199
EcoT14I	CCWWGG	3 cut(s)	336, 460, 1084
EcoT38I	GRGCYC	1 cut(s)	699
ErhI	CCWWGG	3 cut(s)	336, 460, 1084
Esp3I	CGTCTC	1 cut(s)	500
FaeI	CATG	8 cut(s)	153, 340, 464, 1005, 1783, 2006, 2111, 2141
FalI	AAGNNNNNCTT	2 cut(s)	509, 541
FaqI	GGGAC	2 cut(s)	836, 1825
FatI	CATG	8 cut(s)	149, 336, 460, 1001, 1779, 2002, 2107, 2137
FauI	CCCGC	1 cut(s)	135
FbaI	TGATCA	1 cut(s)	1837
FblI	GTMKAC	2 cut(s)	1214, 1278
FokI	GGATG	5 cut(s)	1355, 1426, 1463, 1487, 1561
FriOI	GRGCYC	1 cut(s)	699
FspI	TGCGCA	1 cut(s)	1573
GlaI	GCGC	2 cut(s)	903, 1573
GsaI	CCCAGC	1 cut(s)	798
GsuI	CTGGAG	4 cut(s)	395, 1668, 1887, 2073
HaeIII	GGCC	7 cut(s)	103, 367, 763, 773, 1006, 1269, 2081
HapII	CCGG	8 cut(s)	248, 254, 299, 319, 350, 469, 482, 578
HgaI	GACGC	7 cut(s)	27, 445, 730, 893, 1592, 2038, 2148
HhaI	GCGC	2 cut(s)	904, 1574
Hin1I	GRCGYC	1 cut(s)	19
Hin1II	CATG	8 cut(s)	153, 340, 464, 1005, 1783, 2006, 2111, 2141
Hin6I	GCGC	2 cut(s)	902, 1572
HinP1I	GCGC	2 cut(s)	902, 1572
HincII	GTYRAC	6 cut(s)	649, 723, 908, 1249, 1279, 1689
HindII	GTYRAC	6 cut(s)	649, 723, 908, 1249, 1279, 1689
HindIII	AAGCTT	1 cut(s)	780
HinfI	GANTC	7 cut(s)	465, 553, 1211, 1360, 1511, 1813, 2045
HpaI	GTTAAC	2 cut(s)	649, 1249
HpaII	CCGG	8 cut(s)	248, 254, 299, 319, 350, 469, 482, 578
HphI	GGTGA	4 cut(s)	116, 172, 231, 1787
Hpy166II	GTNNAC	8 cut(s)	649, 723, 908, 1215, 1232, 1249, 1279, 1689
Hpy188III	TCNNGA	7 cut(s)	412, 578, 700, 1134, 1182, 1647, 1904
Hpy8I	GTNNAC	8 cut(s)	649, 723, 908, 1215, 1232, 1249, 1279, 1689
Hpy99I	CGWCG	4 cut(s)	21, 47, 235, 1283
HpyAV	CCTTC	3 cut(s)	505, 1723, 1924
HpyCH4III	ACNGT	5 cut(s)	118, 731, 1018, 1219, 1378
HpyCH4IV	ACGT	1 cut(s)	1660
HpyCH4V	TGCA	4 cut(s)	631, 823, 1001, 2002
HpyF10VI	GCNNNNNNNGC	9 cut(s)	67, 109, 399, 779, 844, 910, 998, 1889, 2117
HpyF3I	CTNAG	6 cut(s)	11, 29, 342, 425, 1226, 1579
HpySE526I	ACGT	1 cut(s)	1660
Hsp92I	GRCGYC	1 cut(s)	19
Hsp92II	CATG	8 cut(s)	153, 340, 464, 1005, 1783, 2006, 2111, 2141
HspAI	GCGC	2 cut(s)	902, 1572
Kpn2I	TCCGGA	1 cut(s)	577
KroI	GCCGGC	1 cut(s)	247
KroNI	GCCGGC	1 cut(s)	249
Ksp22I	TGATCA	1 cut(s)	1837
KspAI	GTTAAC	2 cut(s)	649, 1249
Kzo9I	GATC	4 cut(s)	166, 607, 1837, 2005
LmnI	GCTCC	5 cut(s)	256, 301, 793, 1793, 2128
Lsp1109I	GCAGC	7 cut(s)	377, 886, 985, 1012, 1203, 1876, 2104
LweI	GCATC	7 cut(s)	439, 886, 1275, 1441, 1465, 1583, 2041
MaeII	ACGT	1 cut(s)	1660
MaeIII	GTNAC	9 cut(s)	118, 133, 178, 237, 321, 1198, 1699, 1775, 2160
MalI	GATC	4 cut(s)	168, 609, 1839, 2007
MbiI	CCGCTC	1 cut(s)	2123
MboI	GATC	4 cut(s)	166, 607, 1837, 2005
MfeI	CAATTG	1 cut(s)	2013
MhlI	GDGCHC	1 cut(s)	699
MlsI	TGGCCA	1 cut(s)	367
MluI	ACGCGT	1 cut(s)	739
MluNI	TGGCCA	1 cut(s)	367
MlyI	GAGTC	3 cut(s)	459, 1220, 1807
MmeI	TCCRAC	3 cut(s)	66, 243, 2150
Mox20I	TGGCCA	1 cut(s)	367
MroI	TCCGGA	1 cut(s)	577
MroNI	GCCGGC	1 cut(s)	247
MroXI	GAANNNNTTC	1 cut(s)	1760
MscI	TGGCCA	1 cut(s)	367
MseI	TTAA	7 cut(s)	648, 1020, 1248, 1370, 1617, 1734, 1961
MslI	CAYNNNNRTG	2 cut(s)	749, 2024
Msp20I	TGGCCA	1 cut(s)	367
MspA1I	CMGCKG	2 cut(s)	292, 2117
MspI	CCGG	8 cut(s)	248, 254, 299, 319, 350, 469, 482, 578
MspR9I	CCNGG	6 cut(s)	99, 319, 483, 615, 955, 2151
MunI	CAATTG	1 cut(s)	2013
Mva1269I	GAATGC	1 cut(s)	1861
MvaI	CCWGG	4 cut(s)	99, 615, 955, 2151
MvnI	CGCG	3 cut(s)	741, 904, 1656
MwoI	GCNNNNNNNGC	9 cut(s)	67, 109, 399, 779, 844, 910, 998, 1889, 2117
NaeI	GCCGGC	1 cut(s)	249
NciI	CCSGG	2 cut(s)	319, 483
NcoI	CCATGG	2 cut(s)	336, 460
NdeII	GATC	4 cut(s)	166, 607, 1837, 2005
NgoMIV	GCCGGC	1 cut(s)	247
NlaIII	CATG	8 cut(s)	153, 340, 464, 1005, 1783, 2006, 2111, 2141
NlaIV	GGNNCC	9 cut(s)	252, 297, 303, 348, 354, 619, 707, 789, 852
NmuCI	GTSAC	7 cut(s)	118, 178, 237, 321, 1198, 1775, 2160
NsbI	TGCGCA	1 cut(s)	1573
NspI	RCATGY	3 cut(s)	1783, 2111, 2141
PaeI	GCATGC	2 cut(s)	2111, 2141
PceI	AGGCCT	2 cut(s)	763, 2081
PciI	ACATGT	1 cut(s)	1779
PcsI	WCGNNNNNNNCGW	2 cut(s)	216, 453
PctI	GAATGC	1 cut(s)	1861
PdiI	GCCGGC	1 cut(s)	249
PdmI	GAANNNNTTC	1 cut(s)	1760
PfeI	GAWTC	4 cut(s)	553, 1360, 1511, 2045
PfoI	TCCNGGA	1 cut(s)	613
PleI	GAGTC	3 cut(s)	459, 1219, 1807
PpsI	GAGTC	3 cut(s)	459, 1219, 1807
PscI	ACATGT	1 cut(s)	1779
Psp6I	CCWGG	4 cut(s)	97, 613, 953, 2149
PspFI	CCCAGC	1 cut(s)	794
PspGI	CCWGG	4 cut(s)	97, 613, 953, 2149
PspN4I	GGNNCC	9 cut(s)	252, 297, 303, 348, 354, 619, 707, 789, 852
PspPI	GGNCC	5 cut(s)	101, 617, 772, 850, 951
PstNI	CAGNNNCTG	3 cut(s)	538, 1202, 1586
RsaI	GTAC	7 cut(s)	7, 258, 480, 1416, 1784, 1851, 2186
RsaNI	GTAC	7 cut(s)	6, 257, 479, 1415, 1783, 1850, 2185
RseI	CAYNNNNRTG	2 cut(s)	749, 2024
SalI	GTCGAC	1 cut(s)	1277
SaqAI	TTAA	7 cut(s)	648, 1020, 1248, 1370, 1617, 1734, 1961
Sau3AI	GATC	4 cut(s)	166, 607, 1837, 2005
Sau96I	GGNCC	5 cut(s)	101, 617, 772, 850, 951
SchI	GAGTC	3 cut(s)	459, 1220, 1807
ScrFI	CCNGG	6 cut(s)	99, 319, 483, 615, 955, 2151
SduI	GDGCHC	1 cut(s)	699
SfaNI	GCATC	7 cut(s)	439, 886, 1275, 1441, 1465, 1583, 2041
SfcI	CTRYAG	1 cut(s)	1306
SinI	GGWCC	3 cut(s)	617, 850, 951
SmiI	ATTTAAAT	1 cut(s)	1371
SmiMI	CAYNNNNRTG	2 cut(s)	749, 2024
SmlI	CTYRAG	1 cut(s)	698
SmoI	CTYRAG	1 cut(s)	698
SphI	GCATGC	2 cut(s)	2111, 2141
SseBI	AGGCCT	2 cut(s)	763, 2081
SspI	AATATT	1 cut(s)	281
StuI	AGGCCT	2 cut(s)	763, 2081
StyD4I	CCNGG	6 cut(s)	97, 317, 481, 613, 953, 2149
StyI	CCWWGG	3 cut(s)	336, 460, 1084
SwaI	ATTTAAAT	1 cut(s)	1371
TaaI	ACNGT	5 cut(s)	118, 731, 1018, 1219, 1378
TaiI	ACGT	1 cut(s)	1663
TatI	WGTACW	1 cut(s)	1849
TauI	GCSGC	6 cut(s)	64, 67, 70, 567, 570, 2123
TfiI	GAWTC	4 cut(s)	553, 1360, 1511, 2045
Tru1I	TTAA	7 cut(s)	648, 1020, 1248, 1370, 1617, 1734, 1961
Tru9I	TTAA	7 cut(s)	648, 1020, 1248, 1370, 1617, 1734, 1961
TscAI	CASTG	2 cut(s)	1203, 1234
TseFI	GTSAC	7 cut(s)	118, 178, 237, 321, 1198, 1775, 2160
TseI	GCWGC	7 cut(s)	390, 899, 998, 1025, 1191, 1889, 2117
Tsp45I	GTSAC	7 cut(s)	118, 178, 237, 321, 1198, 1775, 2160
TspDTI	ATGAA	8 cut(s)	196, 566, 587, 1472, 1569, 1635, 1721, 1943
TspGWI	ACGGA	1 cut(s)	1057
TspRI	CASTG	2 cut(s)	1203, 1234
VpaK11BI	GGWCC	3 cut(s)	617, 850, 951
XapI	RAATTY	5 cut(s)	203, 1622, 1827, 1955, 1966
XbaI	TCTAGA	2 cut(s)	1133, 1181
XceI	RCATGY	3 cut(s)	1783, 2111, 2141
XmiI	GTMKAC	2 cut(s)	1214, 1278
XmnI	GAANNNNTTC	1 cut(s)	1760

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.