Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7C

Orthogroup ID

OG0015275

Physical Location & Seq

Genomic Coordinates Forward (+)

8362672 .. 8366017

Gene Structure 3346 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7CG108600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1914 bp

ATGATCAGAAGACGACTCCGGCTGAGCTACTCTTCCGACGAAGAAGAGACCGTGACTCACCCACCCCTCACCCAATCCCGTCCGAACCCTTACCCCTCGGAACCACTCCCAATCTCCTCCTCCTCCGACGAGTTCATCGATGTCTCCGACAACCTCTCGCCGCCGTCTCCTCAGATTCCGGAATCCGATAATCCACCGGCGCCTCCACCGAGCTCCGGCGGTTGTCCGGTTAGCGACTTTCTCCAGGGACTTGGCTTAAGGCTGAAGCGGGAGTGGTTGGATGCTTGCGTTTTGGGGCTACAACAATCCGTGCCGGGCTTTCGAAACCTGGACGCGGCGGCGAAGGCCAAGCTCTGCTTCGAGCAGTTCTTGGTTTCGGATATGAATCTCTCCGGCGGTGGCGTGCTTCCTCAGAACGTGGCCTCTCTTCATCTAGTTGATCTTCCAGGACCTTATGTGTTGCAGGTTGATGAGATTGTTAACATTAGCAATCCTTTGAAGATTAGGTATCAGAAAGTCTCTGCTGGACAGAAAAGGTGCCTCAAGCTGTCGATGACCGACGGTGTTCAACGTGTTTTCAGTATGGAATACAGGCCCATTCAGGCCCTTGAAGCTTTGGCTCCTGCTGGATTGAAGGTTGTTGTGTGCAATGTACATGTACGCCATGGACTTCTTATGCTGGTCCCTCAATCAATTGAAGTTCTAGGAGGATTAGTCGAAGAGCTGGATGTGGCACGGAAAAGGCTTGTTGATGAGGTGAATAAGCCACCAAGGGGAAACAGAACTAGGAATGGAGTAGTTCCTCCTCTAGCGAATAGGGCAGCCCTTGCTGCCTGGCCTCCTGATGGTGTTCATGTTGCTGGACAGGCTAATAGTTCCACATTCGAAGCGCCAACTCCCCTTCATGCGTCTAACCGAGATGCTGGTAGAAATAGCATTCCAATGACTACCCAAGAGACTGTTCCTCTAGGTAGAGAACATGCTGTTTATCATCCATCATCTAATATCGATGAAGAGATGCCTATGGATTCTATTCCCAATAGCAGAGAAAATGCTGTGCCTAACCCATCTTCTTATGGTTTTGGTGTTGAGAGACTCCATATAAACACCGTTCCTTATAGGAGGGAGAATCCGGTGCCTAATACTGCCATTCCCAACCCACCCAACCCACCCTTTGAGGATGCTTTGGATATTGAAGAGGACATTGATATGGATGCTGTTTCTATTAGCAGTGAAACTCGTGGGGCTCGCCCGTCAATTTTGAATGATGATGATATCCATCTGGTTAATGAGGATGAAACTCGTGTGCCCTACCCATCCTCGGATGCTATTTTCAGTGACGAGGATACCAATGTCGTGAATGAGGTGGAGCACCCACTCCTACTGTTTGGAGAGCGAGAGCCCCCTTTCATTTACCTATCTAGTTTGTCGATCAGGTTAGAGACCAGTAATGTTCAATCTGTACGAGGGAAGGTTAAGTGTTTTTTGACTGGTGTCAAGGCTTTCCAATATAAGCAGAAATATGATCTCTGGGCATACATTGATGACGGCGGTATGATATCCGAGATTCTCATTGATCACAATGTTGTACAGAAGAGGATTGGCCATTCTCCCGAGGATGTCACAGCCGGTCTTTCTTCCCCAGATAAGGCTGTAGTTTCCAAAATGAAGGAGAATATGAAGCAGTTCCAAGTTTTCTTAGCAAATTTTGAGGGGATAATGCTCATAGAGATAAGTAAAGGCTCTCCTCCAGTTGCCCTTGAGATGGATCAGGGCTGTCCTTCGTCTGATGCATGGCTGCTTTTGAGGAGACTAAAGGGCTCCCCTCCGGCTCAGACATCACAAAGTCGCTCCTCGCGCCTGGCTCAAAGGTCACAGAGTCTCTCCTCCCGTCCCATTGATATATCGCCATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000280 GO:0000712 GO:0006139 GO:0006259 GO:0006310 GO:0006725 GO:0006807 GO:0006996 GO:0007049 GO:0007059 GO:0007127 GO:0007131 GO:0008150 GO:0008152 GO:0009987 GO:0016043 GO:0022402 GO:0022414 GO:0034641 GO:0035825 GO:0043170 GO:0044237 GO:0044238 GO:0044260 GO:0045132 GO:0046483 GO:0048285 GO:0051304 GO:0051307 GO:0051321 GO:0061982 GO:0071704 GO:0071840 GO:0090304 GO:0098813 GO:0140013 GO:1901360 GO:1903046

KEGG Pathways

Metabolic & Signaling

ko03460 map03460

Pfam Domains

Protein Families

RMI1_C RMI1_N

Protein Analysis

637

Amino Acids

69.91

Weight (kDa)

5.24

Isoelectric Point (pI)

61.98

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
RMI1_N_N	PF21000	85 - 130	1.3e-06	RMI1, N-terminal helical domain
RMI1_N_C	PF08585	136 - 247	3.2e-24	RMI1, N-terminal OB-fold domain
RMI1_C	PF16099	467 - 605	4e-32	Recq-mediated genome instability protein 1, C-terminal OB-fold

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Orthologous Genes (Group: OG0015275)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G63540 AT5G63540
fragaria_vesca	FvH4_1g26610
malus_domestica	MD14G1152700.v1.1
prunus_persica	Prupe.5G147700_v2.0.a1
pyrus_communis	pycom14g12710
rosa_chinensis	RchiOBHm_Chr7g0189541
rosa_laevigata	RLG00000004602
rosa_multiflora	Rmu_sc0001924.1_g000011
rosa_roxburghii	Rroxscaffold_3G00265320
rosa_rugosa	Rorug06G0498900
rosa_samantha	Rh7AG103800 Rh7BG106500 Rh7CG108600 Rh7DG105900
rosa_wichuraiana	Rw7G008960

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	454
AccB1I	GGYRCC	3 cut(s)	199, 537, 1135
AccII	CGCG	2 cut(s)	335, 1858
AccIII	TCCGGA	1 cut(s)	178
AciI	CCGC	7 cut(s)	161, 219, 268, 335, 338, 396, 1551
AclWI	GGATC	1 cut(s)	1776
AcoI	YGGCCR	1 cut(s)	1603
AcsI	RAATTY	1 cut(s)	1705
AcuI	CTGAAG	1 cut(s)	284
AcyI	GRCGYC	1 cut(s)	200
AfaI	GTAC	4 cut(s)	654, 660, 1464, 1590
AfiI	CCNNNNNNNGG	7 cut(s)	215, 334, 773, 845, 1321, 1648, 1765
AflII	CTTAAG	1 cut(s)	256
AflIII	ACRYGT	2 cut(s)	571, 655
AgsI	TTSAA	8 cut(s)	499, 569, 611, 634, 698, 1196, 1264, 1457
AjnI	CCWGG	5 cut(s)	243, 327, 445, 833, 1860
AjuI	GAANNNNNNNTTGG	4 cut(s)	341, 373, 945, 977
AluBI	AGCT	6 cut(s)	27, 213, 352, 547, 614, 724
AluI	AGCT	6 cut(s)	27, 213, 352, 547, 614, 724
Alw21I	GWGCWC	2 cut(s)	215, 1374
Alw26I	GTCTC	9 cut(s)	41, 148, 171, 523, 950, 1087, 1436, 1804, 1886
AlwI	GGATC	1 cut(s)	1776
Ama87I	CYCGRG	1 cut(s)	1613
Aor13HI	TCCGGA	1 cut(s)	178
AoxI	GGCC	6 cut(s)	345, 420, 593, 603, 836, 1603
ApeKI	GCWGC	3 cut(s)	821, 830, 1798
ApoI	RAATTY	1 cut(s)	1705
Asp700I	GAANNNNTTC	1 cut(s)	1685
AspLEI	GCGC	3 cut(s)	202, 892, 1860
AspS9I	GGNCC	4 cut(s)	449, 594, 604, 682
AsuC2I	CCSGG	1 cut(s)	315
AsuHPI	GGTGA	3 cut(s)	50, 61, 769
AsuII	TTCGAA	2 cut(s)	322, 885
AvaI	CYCGRG	1 cut(s)	1613
AvaII	GGWCC	2 cut(s)	449, 682
BaeGI	GKGCMC	1 cut(s)	1311
BaeI	ACNNNNGTAYC	2 cut(s)	1338, 1371
BalI	TGGCCA	1 cut(s)	1605
BanI	GGYRCC	3 cut(s)	199, 537, 1135
BanII	GRGCYC	4 cut(s)	215, 1249, 1404, 1823
BauI	CACGAG	2 cut(s)	1239, 1302
BbsI	GAAGAC	1 cut(s)	16
Bbv12I	GWGCWC	2 cut(s)	215, 1374
BbvI	GCAGC	3 cut(s)	817, 833, 1785
BccI	CCATC	6 cut(s)	839, 1003, 1075, 1287, 1324, 1759
BceAI	ACGGC	2 cut(s)	148, 1564
BciT130I	CCWGG	5 cut(s)	245, 329, 447, 835, 1862
BciVI	GTATCC	1 cut(s)	1339
BclI	TGATCA	2 cut(s)	3, 1576
BcnI	CCSGG	1 cut(s)	315
BcoDI	GTCTC	9 cut(s)	41, 148, 171, 523, 950, 1087, 1436, 1804, 1886
BfaI	CTAG	6 cut(s)	434, 704, 786, 809, 968, 1422
BfmI	CTRYAG	1 cut(s)	1653
BfoI	RGCGCY	2 cut(s)	203, 893
BfrI	CTTAAG	1 cut(s)	256
BfuAI	ACCTGC	1 cut(s)	454
BfuI	GTATCC	1 cut(s)	1339
BisI	GCNGC	6 cut(s)	161, 336, 339, 822, 831, 1799
BlpI	GCTNAGC	1 cut(s)	23
BlsI	GCNGC	6 cut(s)	162, 337, 340, 823, 832, 1800
Bme1390I	CCNGG	6 cut(s)	245, 315, 329, 447, 835, 1862
Bme18I	GGWCC	2 cut(s)	449, 682
BmeT110I	CYCGRG	1 cut(s)	1613
BmgT120I	GGNCC	4 cut(s)	449, 594, 604, 682
BmiI	GGNNCC	7 cut(s)	102, 201, 539, 621, 684, 1137, 1822
BmrFI	CCNGG	6 cut(s)	245, 315, 329, 447, 835, 1862
BmsI	GCATC	7 cut(s)	271, 910, 1008, 1171, 1204, 1315, 1780
BoxI	GACNNNNGTC	1 cut(s)	1493
BpiI	GAAGAC	1 cut(s)	16
BpmI	CTGGAG	2 cut(s)	227, 1734
Bpu1102I	GCTNAGC	1 cut(s)	23
Bpu14I	TTCGAA	2 cut(s)	322, 885
BpuEI	CTTGAG	2 cut(s)	527, 1781
BpuMI	CCSGG	1 cut(s)	315
Bsa29I	ATCGAT	2 cut(s)	138, 1008
BsaBI	GATNNNNATC	2 cut(s)	384, 1278
BsaHI	GRCGYC	1 cut(s)	200
BsaI	GGTCTC	2 cut(s)	41, 1436
BsaJI	CCNNGG	6 cut(s)	96, 244, 664, 770, 1320, 1614
BsaWI	WCCGGW	3 cut(s)	178, 226, 1132
BsaXI	ACNNNNNCTCC	2 cut(s)	699, 729
Bsc4I	CCNNNNNNNGG	7 cut(s)	215, 334, 773, 845, 1321, 1648, 1765
Bse118I	RCCGGY	2 cut(s)	196, 1628
Bse1I	ACTGG	3 cut(s)	1446, 1495, 1751
Bse3DI	GCAATG	1 cut(s)	655
Bse8I	GATNNNNATC	2 cut(s)	384, 1278
BseAI	TCCGGA	1 cut(s)	178
BseBI	CCWGG	5 cut(s)	245, 329, 447, 835, 1862
BseCI	ATCGAT	2 cut(s)	138, 1008
BseDI	CCNNGG	6 cut(s)	96, 244, 664, 770, 1320, 1614
BseGI	GGATG	9 cut(s)	286, 733, 991, 1186, 1219, 1300, 1316, 1330, 1624
BseJI	GATNNNNATC	2 cut(s)	384, 1278
BseLI	CCNNNNNNNGG	7 cut(s)	215, 334, 773, 845, 1321, 1648, 1765
BseMI	GCAATG	1 cut(s)	655
BseMII	CTCAG	4 cut(s)	14, 185, 425, 1847
BseNI	ACTGG	3 cut(s)	1446, 1495, 1751
BseRI	GAGGAG	9 cut(s)	106, 109, 112, 159, 795, 1737, 1822, 1843, 1876
BseSI	GKGCMC	1 cut(s)	1311
BseXI	GCAGC	3 cut(s)	817, 833, 1785
Bsh1236I	CGCG	2 cut(s)	335, 1858
BshFI	GGCC	6 cut(s)	347, 422, 595, 605, 838, 1605
BshNI	GGYRCC	3 cut(s)	199, 537, 1135
BshVI	ATCGAT	2 cut(s)	138, 1008
BsiHKAI	GWGCWC	2 cut(s)	215, 1374
BsiHKCI	CYCGRG	1 cut(s)	1613
BslFI	GGGAC	3 cut(s)	261, 668, 1878
BslI	CCNNNNNNNGG	7 cut(s)	215, 334, 773, 845, 1321, 1648, 1765
BsmAI	GTCTC	9 cut(s)	41, 148, 171, 523, 950, 1087, 1436, 1804, 1886
BsmBI	CGTCTC	1 cut(s)	171
BsmFI	GGGAC	3 cut(s)	261, 668, 1878
BsmI	GAATGC	1 cut(s)	936
BsnI	GGCC	6 cut(s)	347, 422, 595, 605, 838, 1605
Bso31I	GGTCTC	2 cut(s)	41, 1436
BsoBI	CYCGRG	1 cut(s)	1613
Bsp119I	TTCGAA	2 cut(s)	322, 885
Bsp1286I	GDGCHC	6 cut(s)	215, 1249, 1311, 1374, 1404, 1823
Bsp13I	TCCGGA	1 cut(s)	178
Bsp1407I	TGTACA	2 cut(s)	652, 1588
Bsp143I	GATC	6 cut(s)	3, 439, 1431, 1525, 1576, 1768
Bsp1720I	GCTNAGC	1 cut(s)	23
Bsp19I	CCATGG	1 cut(s)	664
BspACI	CCGC	7 cut(s)	161, 219, 268, 335, 338, 396, 1551
BspANI	GGCC	6 cut(s)	347, 422, 595, 605, 838, 1605
BspCNI	CTCAG	4 cut(s)	15, 184, 424, 1846
BspDI	ATCGAT	2 cut(s)	138, 1008
BspEI	TCCGGA	1 cut(s)	178
BspFNI	CGCG	2 cut(s)	335, 1858
BspLI	GGNNCC	7 cut(s)	102, 201, 539, 621, 684, 1137, 1822
BspMI	ACCTGC	1 cut(s)	454
BspPI	GGATC	1 cut(s)	1776
BspQI	GCTCTTC	1 cut(s)	714
BspT104I	TTCGAA	2 cut(s)	322, 885
BspT107I	GGYRCC	3 cut(s)	199, 537, 1135
BspTI	CTTAAG	1 cut(s)	256
BspTNI	GGTCTC	2 cut(s)	41, 1436
BsrDI	GCAATG	1 cut(s)	655
BsrFI	RCCGGY	2 cut(s)	196, 1628
BsrGI	TGTACA	2 cut(s)	652, 1588
BsrI	ACTGG	3 cut(s)	1446, 1495, 1751
BssAI	RCCGGY	2 cut(s)	196, 1628
BssECI	CCNNGG	6 cut(s)	96, 244, 664, 770, 1320, 1614
BssMI	GATC	6 cut(s)	3, 439, 1431, 1525, 1576, 1768
BssNI	GRCGYC	1 cut(s)	200
BssSI	CACGAG	2 cut(s)	1239, 1302
BssT1I	CCWWGG	2 cut(s)	664, 770
Bst2BI	CACGAG	2 cut(s)	1239, 1302
Bst2UI	CCWGG	5 cut(s)	245, 329, 447, 835, 1862
Bst4CI	ACNGT	5 cut(s)	52, 563, 961, 1111, 1386
Bst6I	CTCTTC	7 cut(s)	37, 39, 432, 714, 1008, 1191, 1589
BstACI	GRCGYC	1 cut(s)	200
BstAFI	CTTAAG	1 cut(s)	256
BstAPI	GCANNNNNTGC	1 cut(s)	827
BstAUI	TGTACA	2 cut(s)	652, 1588
BstBI	TTCGAA	2 cut(s)	322, 885
BstC8I	GCNNGC	3 cut(s)	286, 404, 1249
BstDEI	CTNAG	5 cut(s)	23, 171, 411, 1699, 1833
BstDSI	CCRYGG	1 cut(s)	664
BstF5I	GGATG	9 cut(s)	286, 733, 991, 1186, 1219, 1300, 1316, 1330, 1624
BstFNI	CGCG	2 cut(s)	335, 1858
BstH2I	RGCGCY	2 cut(s)	203, 893
BstHHI	GCGC	3 cut(s)	202, 892, 1860
BstKTI	GATC	6 cut(s)	6, 442, 1434, 1528, 1579, 1771
BstMAI	GTCTC	9 cut(s)	41, 148, 171, 523, 950, 1087, 1436, 1804, 1886
BstMBI	GATC	6 cut(s)	3, 439, 1431, 1525, 1576, 1768
BstMWI	GCNNNNNNNGC	7 cut(s)	344, 611, 818, 827, 830, 866, 1857
BstNI	CCWGG	5 cut(s)	245, 329, 447, 835, 1862
BstNSI	RCATGY	2 cut(s)	659, 983
BstPAI	GACNNNNGTC	1 cut(s)	1493
BstSCI	CCNGG	6 cut(s)	243, 313, 327, 445, 833, 1860
BstSFI	CTRYAG	1 cut(s)	1653
BstSLI	GKGCMC	1 cut(s)	1311
BstUI	CGCG	2 cut(s)	335, 1858
BstV1I	GCAGC	3 cut(s)	817, 833, 1785
BstV2I	GAAGAC	1 cut(s)	16
BstXI	CCANNNNNNTGG	1 cut(s)	251
Bsu15I	ATCGAT	2 cut(s)	138, 1008
BsuI	GTATCC	1 cut(s)	1339
BsuRI	GGCC	6 cut(s)	347, 422, 595, 605, 838, 1605
BsuTUI	ATCGAT	2 cut(s)	138, 1008
BtgI	CCRYGG	1 cut(s)	664
BtsCI	GGATG	9 cut(s)	286, 733, 991, 1186, 1219, 1300, 1316, 1330, 1624
BtsI	GCAGTG	1 cut(s)	1237
BtsIMutI	CAGTG	2 cut(s)	1237, 1342
BveI	ACCTGC	1 cut(s)	454
Cac8I	GCNNGC	3 cut(s)	286, 404, 1249
CfoI	GCGC	3 cut(s)	202, 892, 1860
Cfr10I	RCCGGY	2 cut(s)	196, 1628
Cfr13I	GGNCC	4 cut(s)	449, 594, 604, 682
ClaI	ATCGAT	2 cut(s)	138, 1008
CseI	GACGC	2 cut(s)	341, 897
Csp6I	GTAC	4 cut(s)	653, 659, 1463, 1589
CviAII	CATG	6 cut(s)	656, 665, 854, 905, 980, 1794
CviQI	GTAC	4 cut(s)	653, 659, 1463, 1589
DdeI	CTNAG	5 cut(s)	23, 171, 411, 1699, 1833
DinI	GGCGCC	1 cut(s)	201
DpnI	GATC	6 cut(s)	5, 441, 1433, 1527, 1578, 1770
DpnII	GATC	6 cut(s)	3, 439, 1431, 1525, 1576, 1768
EaeI	YGGCCR	1 cut(s)	1603
Eam1104I	CTCTTC	7 cut(s)	37, 39, 432, 714, 1008, 1191, 1589
EarI	CTCTTC	7 cut(s)	37, 39, 432, 714, 1008, 1191, 1589
Ecl136II	GAGCTC	1 cut(s)	213
Eco130I	CCWWGG	2 cut(s)	664, 770
Eco24I	GRGCYC	4 cut(s)	215, 1249, 1404, 1823
Eco31I	GGTCTC	2 cut(s)	41, 1436
Eco32I	GATATC	2 cut(s)	1276, 1560
Eco47I	GGWCC	2 cut(s)	449, 682
Eco53kI	GAGCTC	1 cut(s)	213
Eco57I	CTGAAG	1 cut(s)	284
Eco88I	CYCGRG	1 cut(s)	1613
EcoICRI	GAGCTC	1 cut(s)	213
EcoO109I	RGGNCCY	2 cut(s)	449, 604
EcoRII	CCWGG	5 cut(s)	243, 327, 445, 833, 1860
EcoRV	GATATC	2 cut(s)	1276, 1560
EcoT14I	CCWWGG	2 cut(s)	664, 770
EcoT22I	ATGCAT	1 cut(s)	1795
EcoT38I	GRGCYC	4 cut(s)	215, 1249, 1404, 1823
EgeI	GGCGCC	1 cut(s)	201
EheI	GGCGCC	1 cut(s)	201
ErhI	CCWWGG	2 cut(s)	664, 770
Esp3I	CGTCTC	1 cut(s)	171
FaeI	CATG	6 cut(s)	659, 668, 857, 908, 983, 1797
FalI	AAGNNNNNCTT	2 cut(s)	341, 373
FaqI	GGGAC	3 cut(s)	261, 668, 1878
FatI	CATG	6 cut(s)	655, 664, 853, 904, 979, 1793
FauI	CCCGC	1 cut(s)	261
FbaI	TGATCA	2 cut(s)	3, 1576
Fnu4HI	GCNGC	6 cut(s)	161, 336, 339, 822, 831, 1799
FokI	GGATG	9 cut(s)	293, 740, 978, 1193, 1226, 1303, 1307, 1337, 1631
FriOI	GRGCYC	4 cut(s)	215, 1249, 1404, 1823
Fsp4HI	GCNGC	6 cut(s)	161, 336, 339, 822, 831, 1799
FspBI	CTAG	6 cut(s)	434, 704, 786, 809, 968, 1422
GlaI	GCGC	3 cut(s)	201, 891, 1859
GluI	GCNGC	6 cut(s)	161, 336, 339, 822, 831, 1799
GsuI	CTGGAG	2 cut(s)	227, 1734
HaeII	RGCGCY	2 cut(s)	203, 893
HaeIII	GGCC	6 cut(s)	347, 422, 595, 605, 838, 1605
HgaI	GACGC	2 cut(s)	341, 897
HhaI	GCGC	3 cut(s)	202, 892, 1860
Hin1I	GRCGYC	1 cut(s)	200
Hin1II	CATG	6 cut(s)	659, 668, 857, 908, 983, 1797
Hin6I	GCGC	3 cut(s)	200, 890, 1858
HinP1I	GCGC	3 cut(s)	200, 890, 1858
HincII	GTYRAC	1 cut(s)	481
HindII	GTYRAC	1 cut(s)	481
HindIII	AAGCTT	1 cut(s)	612
HpaI	GTTAAC	1 cut(s)	481
HphI	GGTGA	3 cut(s)	50, 61, 769
Hpy166II	GTNNAC	1 cut(s)	481
Hpy188III	TCNNGA	4 cut(s)	179, 842, 1357, 1613
Hpy8I	GTNNAC	1 cut(s)	481
Hpy99I	CGWCG	3 cut(s)	41, 131, 563
HpyAV	CCTTC	6 cut(s)	337, 628, 911, 1465, 1663, 1791
HpyCH4III	ACNGT	5 cut(s)	52, 563, 961, 1111, 1386
HpyCH4IV	ACGT	2 cut(s)	417, 571
HpyCH4V	TGCA	3 cut(s)	463, 648, 1793
HpyF10VI	GCNNNNNNNGC	7 cut(s)	344, 611, 818, 827, 830, 866, 1857
HpyF3I	CTNAG	5 cut(s)	23, 171, 411, 1699, 1833
HpySE526I	ACGT	2 cut(s)	417, 571
Hsp92I	GRCGYC	1 cut(s)	200
Hsp92II	CATG	6 cut(s)	659, 668, 857, 908, 983, 1797
HspAI	GCGC	3 cut(s)	200, 890, 1858
KasI	GGCGCC	1 cut(s)	199
Kpn2I	TCCGGA	1 cut(s)	178
Ksp22I	TGATCA	2 cut(s)	3, 1576
KspAI	GTTAAC	1 cut(s)	481
Kzo9I	GATC	6 cut(s)	3, 439, 1431, 1525, 1576, 1768
LguI	GCTCTTC	1 cut(s)	714
LmnI	GCTCC	5 cut(s)	218, 625, 1369, 1826, 1856
Lsp1109I	GCAGC	3 cut(s)	817, 833, 1785
LweI	GCATC	7 cut(s)	271, 910, 1008, 1171, 1204, 1315, 1780
MaeI	CTAG	6 cut(s)	434, 704, 786, 809, 968, 1422
MaeII	ACGT	2 cut(s)	417, 571
MaeIII	GTNAC	4 cut(s)	52, 1337, 1621, 1872
MalI	GATC	6 cut(s)	5, 441, 1433, 1527, 1578, 1770
MboI	GATC	6 cut(s)	3, 439, 1431, 1525, 1576, 1768
MfeI	CAATTG	1 cut(s)	693
MhlI	GDGCHC	6 cut(s)	215, 1249, 1311, 1374, 1404, 1823
MlsI	TGGCCA	1 cut(s)	1605
MluCI	AATT	3 cut(s)	693, 1257, 1705
MluNI	TGGCCA	1 cut(s)	1605
Mly113I	GGCGCC	1 cut(s)	200
MlyI	GAGTC	4 cut(s)	9, 49, 1089, 1888
MmeI	TCCRAC	4 cut(s)	60, 150, 171, 258
Mox20I	TGGCCA	1 cut(s)	1605
Mph1103I	ATGCAT	1 cut(s)	1795
MroI	TCCGGA	1 cut(s)	178
MroXI	GAANNNNTTC	1 cut(s)	1685
MscI	TGGCCA	1 cut(s)	1605
MseI	TTAA	4 cut(s)	257, 480, 1287, 1476
MslI	CAYNNNNRTG	2 cut(s)	941, 1208
Msp20I	TGGCCA	1 cut(s)	1605
MspCI	CTTAAG	1 cut(s)	256
MspR9I	CCNGG	6 cut(s)	245, 315, 329, 447, 835, 1862
MunI	CAATTG	1 cut(s)	693
Mva1269I	GAATGC	1 cut(s)	936
MvaI	CCWGG	5 cut(s)	245, 329, 447, 835, 1862
MvnI	CGCG	2 cut(s)	335, 1858
MwoI	GCNNNNNNNGC	7 cut(s)	344, 611, 818, 827, 830, 866, 1857
NarI	GGCGCC	1 cut(s)	200
NciI	CCSGG	1 cut(s)	315
NcoI	CCATGG	1 cut(s)	664
NdeII	GATC	6 cut(s)	3, 439, 1431, 1525, 1576, 1768
NlaIII	CATG	6 cut(s)	659, 668, 857, 908, 983, 1797
NlaIV	GGNNCC	7 cut(s)	102, 201, 539, 621, 684, 1137, 1822
NmuCI	GTSAC	4 cut(s)	52, 1337, 1621, 1872
NsiI	ATGCAT	1 cut(s)	1795
NspI	RCATGY	2 cut(s)	659, 983
NspV	TTCGAA	2 cut(s)	322, 885
PciI	ACATGT	1 cut(s)	655
PciSI	GCTCTTC	1 cut(s)	714
PcsI	WCGNNNNNNNCGW	2 cut(s)	135, 144
PctI	GAATGC	1 cut(s)	936
PdmI	GAANNNNTTC	1 cut(s)	1685
PfeI	GAWTC	6 cut(s)	175, 182, 385, 1028, 1129, 1567
PfoI	TCCNGGA	1 cut(s)	445
PkrI	GCNGC	6 cut(s)	162, 337, 340, 823, 832, 1800
PleI	GAGTC	4 cut(s)	9, 49, 1089, 1887
PluTI	GGCGCC	1 cut(s)	203
PpsI	GAGTC	4 cut(s)	9, 49, 1089, 1887
PpuMI	RGGWCCY	1 cut(s)	449
PscI	ACATGT	1 cut(s)	655
PshAI	GACNNNNGTC	1 cut(s)	1493
Psp124BI	GAGCTC	1 cut(s)	215
Psp5II	RGGWCCY	1 cut(s)	449
Psp6I	CCWGG	5 cut(s)	243, 327, 445, 833, 1860
PspGI	CCWGG	5 cut(s)	243, 327, 445, 833, 1860
PspN4I	GGNNCC	7 cut(s)	102, 201, 539, 621, 684, 1137, 1822
PspPI	GGNCC	4 cut(s)	449, 594, 604, 682
PspPPI	RGGWCCY	1 cut(s)	449
RsaI	GTAC	4 cut(s)	654, 660, 1464, 1590
RsaNI	GTAC	4 cut(s)	653, 659, 1463, 1589
RseI	CAYNNNNRTG	2 cut(s)	941, 1208
SacI	GAGCTC	1 cut(s)	215
SapI	GCTCTTC	1 cut(s)	714
SaqAI	TTAA	4 cut(s)	257, 480, 1287, 1476
SatI	GCNGC	6 cut(s)	161, 336, 339, 822, 831, 1799
Sau3AI	GATC	6 cut(s)	3, 439, 1431, 1525, 1576, 1768
Sau96I	GGNCC	4 cut(s)	449, 594, 604, 682
SchI	GAGTC	4 cut(s)	9, 49, 1089, 1888
ScrFI	CCNGG	6 cut(s)	245, 315, 329, 447, 835, 1862
SduI	GDGCHC	6 cut(s)	215, 1249, 1311, 1374, 1404, 1823
SfaNI	GCATC	7 cut(s)	271, 910, 1008, 1171, 1204, 1315, 1780
SfcI	CTRYAG	1 cut(s)	1653
SfoI	GGCGCC	1 cut(s)	201
SfuI	TTCGAA	2 cut(s)	322, 885
SgrAI	CRCCGGYG	1 cut(s)	196
SinI	GGWCC	2 cut(s)	449, 682
SmiMI	CAYNNNNRTG	2 cut(s)	941, 1208
SmlI	CTYRAG	3 cut(s)	256, 542, 1760
SmoI	CTYRAG	3 cut(s)	256, 542, 1760
Sse9I	AATT	3 cut(s)	693, 1257, 1705
SsiI	CCGC	7 cut(s)	161, 219, 268, 335, 338, 396, 1551
SspDI	GGCGCC	1 cut(s)	199
SspMI	CTAG	6 cut(s)	434, 704, 786, 809, 968, 1422
SstI	GAGCTC	1 cut(s)	215
StyD4I	CCNGG	6 cut(s)	243, 313, 327, 445, 833, 1860
StyI	CCWWGG	2 cut(s)	664, 770
TaaI	ACNGT	5 cut(s)	52, 563, 961, 1111, 1386
TaiI	ACGT	2 cut(s)	420, 574
TaqI	TCGA	8 cut(s)	138, 322, 360, 551, 717, 885, 1008, 1430
TaqII	GACCGA	1 cut(s)	572
TasI	AATT	3 cut(s)	693, 1257, 1705
TatI	WGTACW	2 cut(s)	652, 1588
TauI	GCSGC	3 cut(s)	163, 338, 341
TfiI	GAWTC	6 cut(s)	175, 182, 385, 1028, 1129, 1567
Tru1I	TTAA	4 cut(s)	257, 480, 1287, 1476
Tru9I	TTAA	4 cut(s)	257, 480, 1287, 1476
TscAI	CASTG	2 cut(s)	1237, 1342
TseFI	GTSAC	4 cut(s)	52, 1337, 1621, 1872
TseI	GCWGC	3 cut(s)	821, 830, 1798
Tsp45I	GTSAC	4 cut(s)	52, 1337, 1621, 1872
TspGWI	ACGGA	2 cut(s)	298, 751
TspRI	CASTG	2 cut(s)	1237, 1342
Vha464I	CTTAAG	1 cut(s)	256
VpaK11BI	GGWCC	2 cut(s)	449, 682
XapI	RAATTY	1 cut(s)	1705
XceI	RCATGY	2 cut(s)	659, 983
XmnI	GAANNNNTTC	1 cut(s)	1685
XspI	CTAG	6 cut(s)	434, 704, 786, 809, 968, 1422
Zsp2I	ATGCAT	1 cut(s)	1795

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.