Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7D

Orthogroup ID

OG0015275

Physical Location & Seq

Genomic Coordinates Forward (+)

9052023 .. 9055274

Gene Structure 3252 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7DG105900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1905 bp

ATGATCAGAAGACGACTCCGGCTGAGCTACTCTTCCGACGAAGAAGAGACCGTGACTCACCCACCCCTCACCCAATCCCGTCCGAACCCGTACCCCTCGGAACCACTCCCAATCTCCTCCTCCTCCGACGACGAGTTCATTGACGTCTCCGACAACCTCTCGCCGCCGTCTCCTCAGTTTCCGGAATCCGATAATCCACCGGCGCCTCCACCGAGCTCCGGCGGTTGTCCGGTTAGCGACTTTCTCCAGGGACTTGGCTTAAGGCTGAAGCGGGAGTGGTTGGATGCTTGCGTTTTGGGGCTGCCGGGCTTTCGAAACCTGGACGCGGCGGCGAAGGCCAAGCTCTGCTTCGAGCAGTTCTTGGTTTCGGATATGAATCTCTCCGGCGGTGGCGTGCTTCCTCAGAACGTGGCCTCTCTTCATCTAGTTGATCTTCCAGGACCTTATGTGTTGCAGGTTGATGAGATTGTTAACATTAGCAATCCTTTGAAGATTAGGTATCAGAAAGCCTCTGCTGGACACAAAAGGTGCCTCAAGCTGTCGATGACCGACGGTGTTCAACGTGTTTTCGGTATGGAATACAGGCCCATTCAGGCCCTTGAAGCTTTGACTCCTGCTGGATTGAAGGTTGTTGTGTGCAATGTACATGTTCGCCATGGACTTCTTATGCTGGTCCCTCAATCAATTCAAGTTCTAGGAGGATTAGTCGAAGAGCTGGATGCGGCACGGAAAAGGCTTTTTGATGAGGTGAATAAGCCACCAAGGGGAAACAGAACTAGGAATGGAGTAGTTCCTCCTCTAGTGAATAGGGCAGCCCTTGCTGCCTGGCCTCCTGATGGTGTTCATGTTGCTGGACAGGCTAATAGTTCCACATTCGAAGCGCCAACTCCCCTTCATGCGTCCAACCGAGATGCTGGTAGAAATAGCATTCCAATGACTACCCAAGAGACTGTTCCTCTAGGTAGAGAACATGCTGTTTATCATCCATCATCTAATATCGATGAAGAGATGCCTATGGATTCTATTCCCAATAGCAGAGAAAATGCTGTGCCTAACCCATCTTCTTATGGTTTTGGTGTTGAGAGACTCCATATAAACACCGTTCCTTATAGGAGGGAGAATCCGGTGCCTAATACTGCCATTCCTAACCCACCCAACCCACCCTTTGAGGATGCTTTGGATATTGAAGAGGACATTGATATGGATGCTGTTTCTATTAGCAGTGAAACTCGTGGGGCTCGCCCGTCAATTTTGAATGATGATGATATCCATCTGGTTAATGAAGATGAAACTCGTGTGCCCTACCCATCCTCGGATGCTATTTTCAGTGACGAGGATACCAATGTCGTGAATGAGGTGGAGCACCCACTCCTACTGTTTGGAGAGCGAGAGCCCCCTTTCATTTACCTATCTAGTTTGTCGATCAGGTTAGAGACCAGTAATGTTCAATCTGTACGAGGGAAGGTTAAGTGTTTTTTGACTGGTGTCAAGGCTTTCCAATATAAGCAGAAATATGATCTCCGGGCATACATTGATGACGGCGGTATGATATCCGAGATTCTCATTGATCACAATGTTGTACAGAAGAGGATTGGCCATTCTCCCGAGGATGTCACAGCCGGTCTTTCTTCCCCAGATAAGGCTGTAGTTTCCAAAATGAAGGAGAATATGAAGCAGTTCCAAGTTTTCTTAGCAAATTTTGAGGGGATAATGCTCATAGAGATAAGTAAAGGCTCTCCTCCAGTTGCCCTTGAGATGGATCAGGGCTGTCCTTCGTCTGATGCATGGCTGCTTCTGAGGAGACTAAAGGACTCCCCTCCGGCCCAGACATCACAAAGTCGCTCCTCGCGCCTGGCTCAAAGGTCACAGAGTCTCTCCTCCCGTCCCATTGATATATCGCCATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000280 GO:0000712 GO:0006139 GO:0006259 GO:0006310 GO:0006725 GO:0006807 GO:0006996 GO:0007049 GO:0007059 GO:0007127 GO:0007131 GO:0008150 GO:0008152 GO:0009987 GO:0016043 GO:0022402 GO:0022414 GO:0034641 GO:0035825 GO:0043170 GO:0044237 GO:0044238 GO:0044260 GO:0045132 GO:0046483 GO:0048285 GO:0051304 GO:0051307 GO:0051321 GO:0061982 GO:0071704 GO:0071840 GO:0090304 GO:0098813 GO:0140013 GO:1901360 GO:1903046

KEGG Pathways

Metabolic & Signaling

ko03460 map03460

Pfam Domains

Protein Families

RMI1_C RMI1_N

Protein Analysis

634

Amino Acids

69.67

Weight (kDa)

5.29

Isoelectric Point (pI)

61.38

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
RMI1_N_C	PF08585	133 - 244	6.1e-26	RMI1, N-terminal OB-fold domain
RMI1_C	PF16099	464 - 602	9.6e-33	Recq-mediated genome instability protein 1, C-terminal OB-fold

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Orthologous Genes (Group: OG0015275)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G63540 AT5G63540
fragaria_vesca	FvH4_1g26610
malus_domestica	MD14G1152700.v1.1
prunus_persica	Prupe.5G147700_v2.0.a1
pyrus_communis	pycom14g12710
rosa_chinensis	RchiOBHm_Chr7g0189541
rosa_laevigata	RLG00000004602
rosa_multiflora	Rmu_sc0001924.1_g000011
rosa_roxburghii	Rroxscaffold_3G00265320
rosa_rugosa	Rorug06G0498900
rosa_samantha	Rh7AG103800 Rh7BG106500 Rh7CG108600 Rh7DG105900
rosa_wichuraiana	Rw7G008960

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	147
Acc36I	ACCTGC	1 cut(s)	445
AccB1I	GGYRCC	3 cut(s)	202, 528, 1126
AccII	CGCG	2 cut(s)	326, 1849
AccIII	TCCGGA	1 cut(s)	181
AciI	CCGC	8 cut(s)	164, 222, 271, 326, 329, 387, 722, 1542
AclWI	GGATC	1 cut(s)	1767
AcoI	YGGCCR	1 cut(s)	1594
AcsI	RAATTY	1 cut(s)	1696
AcuI	CTGAAG	1 cut(s)	287
AcyI	GRCGYC	2 cut(s)	144, 203
AfaI	GTAC	4 cut(s)	92, 645, 1455, 1581
AfiI	CCNNNNNNNGG	7 cut(s)	218, 325, 764, 836, 1312, 1639, 1756
AflII	CTTAAG	1 cut(s)	259
AflIII	ACRYGT	2 cut(s)	562, 646
AgsI	TTSAA	8 cut(s)	490, 560, 602, 625, 689, 1187, 1255, 1448
AjnI	CCWGG	5 cut(s)	246, 318, 436, 824, 1851
AjuI	GAANNNNNNNTTGG	4 cut(s)	332, 364, 936, 968
AluBI	AGCT	6 cut(s)	27, 216, 343, 538, 605, 715
AluI	AGCT	6 cut(s)	27, 216, 343, 538, 605, 715
Alw21I	GWGCWC	2 cut(s)	218, 1365
Alw26I	GTCTC	8 cut(s)	41, 151, 174, 941, 1078, 1427, 1795, 1877
AlwI	GGATC	1 cut(s)	1767
Ama87I	CYCGRG	1 cut(s)	1604
Aor13HI	TCCGGA	1 cut(s)	181
AoxI	GGCC	7 cut(s)	336, 411, 584, 594, 827, 1594, 1821
ApeKI	GCWGC	4 cut(s)	301, 812, 821, 1789
ApoI	RAATTY	1 cut(s)	1696
Asp700I	GAANNNNTTC	1 cut(s)	1676
AspLEI	GCGC	3 cut(s)	205, 883, 1851
AspS9I	GGNCC	5 cut(s)	440, 585, 595, 673, 1822
AsuC2I	CCSGG	2 cut(s)	306, 1523
AsuHPI	GGTGA	3 cut(s)	50, 61, 760
AsuII	TTCGAA	2 cut(s)	313, 876
AvaI	CYCGRG	1 cut(s)	1604
AvaII	GGWCC	2 cut(s)	440, 673
BaeGI	GKGCMC	1 cut(s)	1302
BaeI	ACNNNNGTAYC	2 cut(s)	1329, 1362
BalI	TGGCCA	1 cut(s)	1596
BanI	GGYRCC	3 cut(s)	202, 528, 1126
BanII	GRGCYC	3 cut(s)	218, 1240, 1395
BauI	CACGAG	2 cut(s)	1230, 1293
BbsI	GAAGAC	1 cut(s)	16
Bbv12I	GWGCWC	2 cut(s)	218, 1365
BbvI	GCAGC	4 cut(s)	288, 808, 824, 1776
BccI	CCATC	6 cut(s)	830, 994, 1066, 1278, 1315, 1750
BceAI	ACGGC	2 cut(s)	151, 1555
BciT130I	CCWGG	5 cut(s)	248, 320, 438, 826, 1853
BciVI	GTATCC	1 cut(s)	1330
BclI	TGATCA	2 cut(s)	3, 1567
BcnI	CCSGG	2 cut(s)	306, 1523
BcoDI	GTCTC	8 cut(s)	41, 151, 174, 941, 1078, 1427, 1795, 1877
BfaI	CTAG	6 cut(s)	425, 695, 777, 800, 959, 1413
BfmI	CTRYAG	1 cut(s)	1644
BfoI	RGCGCY	2 cut(s)	206, 884
BfrI	CTTAAG	1 cut(s)	259
BfuAI	ACCTGC	1 cut(s)	445
BfuI	GTATCC	1 cut(s)	1330
BisI	GCNGC	8 cut(s)	164, 302, 327, 330, 723, 813, 822, 1790
BlpI	GCTNAGC	1 cut(s)	23
BlsI	GCNGC	8 cut(s)	165, 303, 328, 331, 724, 814, 823, 1791
Bme1390I	CCNGG	7 cut(s)	248, 306, 320, 438, 826, 1523, 1853
Bme18I	GGWCC	2 cut(s)	440, 673
BmeT110I	CYCGRG	1 cut(s)	1604
BmgT120I	GGNCC	5 cut(s)	440, 585, 595, 673, 1822
BmiI	GGNNCC	5 cut(s)	102, 204, 530, 675, 1128
BmrFI	CCNGG	7 cut(s)	248, 306, 320, 438, 826, 1523, 1853
BmsI	GCATC	8 cut(s)	274, 709, 901, 999, 1162, 1195, 1306, 1771
BoxI	GACNNNNGTC	1 cut(s)	1484
BpiI	GAAGAC	1 cut(s)	16
BpmI	CTGGAG	2 cut(s)	230, 1725
Bpu1102I	GCTNAGC	1 cut(s)	23
Bpu14I	TTCGAA	2 cut(s)	313, 876
BpuEI	CTTGAG	2 cut(s)	518, 1772
BpuMI	CCSGG	2 cut(s)	306, 1523
Bsa29I	ATCGAT	1 cut(s)	999
BsaBI	GATNNNNATC	2 cut(s)	375, 1269
BsaHI	GRCGYC	2 cut(s)	144, 203
BsaI	GGTCTC	2 cut(s)	41, 1427
BsaJI	CCNNGG	6 cut(s)	96, 247, 655, 761, 1311, 1605
BsaWI	WCCGGW	3 cut(s)	181, 229, 1123
BsaXI	ACNNNNNCTCC	2 cut(s)	690, 720
Bsc4I	CCNNNNNNNGG	7 cut(s)	218, 325, 764, 836, 1312, 1639, 1756
Bse118I	RCCGGY	2 cut(s)	199, 1619
Bse1I	ACTGG	3 cut(s)	1437, 1486, 1742
Bse3DI	GCAATG	1 cut(s)	646
Bse8I	GATNNNNATC	2 cut(s)	375, 1269
BseAI	TCCGGA	1 cut(s)	181
BseBI	CCWGG	5 cut(s)	248, 320, 438, 826, 1853
BseCI	ATCGAT	1 cut(s)	999
BseDI	CCNNGG	6 cut(s)	96, 247, 655, 761, 1311, 1605
BseGI	GGATG	8 cut(s)	289, 724, 982, 1177, 1210, 1307, 1321, 1615
BseJI	GATNNNNATC	2 cut(s)	375, 1269
BseLI	CCNNNNNNNGG	7 cut(s)	218, 325, 764, 836, 1312, 1639, 1756
BseMI	GCAATG	1 cut(s)	646
BseMII	CTCAG	4 cut(s)	14, 188, 416, 1787
BseNI	ACTGG	3 cut(s)	1437, 1486, 1742
BseRI	GAGGAG	9 cut(s)	106, 109, 112, 162, 786, 1728, 1813, 1834, 1867
BseSI	GKGCMC	1 cut(s)	1302
BseXI	GCAGC	4 cut(s)	288, 808, 824, 1776
Bsh1236I	CGCG	2 cut(s)	326, 1849
BshFI	GGCC	7 cut(s)	338, 413, 586, 596, 829, 1596, 1823
BshNI	GGYRCC	3 cut(s)	202, 528, 1126
BshVI	ATCGAT	1 cut(s)	999
BsiHKAI	GWGCWC	2 cut(s)	218, 1365
BsiHKCI	CYCGRG	1 cut(s)	1604
BslFI	GGGAC	3 cut(s)	264, 659, 1869
BslI	CCNNNNNNNGG	7 cut(s)	218, 325, 764, 836, 1312, 1639, 1756
BsmAI	GTCTC	8 cut(s)	41, 151, 174, 941, 1078, 1427, 1795, 1877
BsmBI	CGTCTC	2 cut(s)	151, 174
BsmFI	GGGAC	3 cut(s)	264, 659, 1869
BsmI	GAATGC	1 cut(s)	927
BsnI	GGCC	7 cut(s)	338, 413, 586, 596, 829, 1596, 1823
Bso31I	GGTCTC	2 cut(s)	41, 1427
BsoBI	CYCGRG	1 cut(s)	1604
Bsp119I	TTCGAA	2 cut(s)	313, 876
Bsp1286I	GDGCHC	5 cut(s)	218, 1240, 1302, 1365, 1395
Bsp13I	TCCGGA	1 cut(s)	181
Bsp1407I	TGTACA	2 cut(s)	643, 1579
Bsp143I	GATC	6 cut(s)	3, 430, 1422, 1516, 1567, 1759
Bsp1720I	GCTNAGC	1 cut(s)	23
Bsp19I	CCATGG	1 cut(s)	655
BspACI	CCGC	8 cut(s)	164, 222, 271, 326, 329, 387, 722, 1542
BspANI	GGCC	7 cut(s)	338, 413, 586, 596, 829, 1596, 1823
BspCNI	CTCAG	4 cut(s)	15, 187, 415, 1788
BspDI	ATCGAT	1 cut(s)	999
BspEI	TCCGGA	1 cut(s)	181
BspFNI	CGCG	2 cut(s)	326, 1849
BspLI	GGNNCC	5 cut(s)	102, 204, 530, 675, 1128
BspMI	ACCTGC	1 cut(s)	445
BspPI	GGATC	1 cut(s)	1767
BspQI	GCTCTTC	1 cut(s)	705
BspT104I	TTCGAA	2 cut(s)	313, 876
BspT107I	GGYRCC	3 cut(s)	202, 528, 1126
BspTI	CTTAAG	1 cut(s)	259
BspTNI	GGTCTC	2 cut(s)	41, 1427
BsrDI	GCAATG	1 cut(s)	646
BsrFI	RCCGGY	2 cut(s)	199, 1619
BsrGI	TGTACA	2 cut(s)	643, 1579
BsrI	ACTGG	3 cut(s)	1437, 1486, 1742
BssAI	RCCGGY	2 cut(s)	199, 1619
BssECI	CCNNGG	6 cut(s)	96, 247, 655, 761, 1311, 1605
BssMI	GATC	6 cut(s)	3, 430, 1422, 1516, 1567, 1759
BssNI	GRCGYC	2 cut(s)	144, 203
BssSI	CACGAG	2 cut(s)	1230, 1293
BssT1I	CCWWGG	2 cut(s)	655, 761
Bst2BI	CACGAG	2 cut(s)	1230, 1293
Bst2UI	CCWGG	5 cut(s)	248, 320, 438, 826, 1853
Bst4CI	ACNGT	5 cut(s)	52, 554, 952, 1102, 1377
Bst6I	CTCTTC	7 cut(s)	37, 39, 423, 705, 999, 1182, 1580
BstACI	GRCGYC	2 cut(s)	144, 203
BstAFI	CTTAAG	1 cut(s)	259
BstAPI	GCANNNNNTGC	1 cut(s)	818
BstAUI	TGTACA	2 cut(s)	643, 1579
BstBI	TTCGAA	2 cut(s)	313, 876
BstC8I	GCNNGC	3 cut(s)	289, 395, 1240
BstDEI	CTNAG	5 cut(s)	23, 174, 402, 1690, 1796
BstDSI	CCRYGG	1 cut(s)	655
BstF5I	GGATG	8 cut(s)	289, 724, 982, 1177, 1210, 1307, 1321, 1615
BstFNI	CGCG	2 cut(s)	326, 1849
BstH2I	RGCGCY	2 cut(s)	206, 884
BstHHI	GCGC	3 cut(s)	205, 883, 1851
BstKTI	GATC	6 cut(s)	6, 433, 1425, 1519, 1570, 1762
BstMAI	GTCTC	8 cut(s)	41, 151, 174, 941, 1078, 1427, 1795, 1877
BstMBI	GATC	6 cut(s)	3, 430, 1422, 1516, 1567, 1759
BstMWI	GCNNNNNNNGC	6 cut(s)	335, 602, 818, 821, 857, 1848
BstNI	CCWGG	5 cut(s)	248, 320, 438, 826, 1853
BstNSI	RCATGY	2 cut(s)	650, 974
BstPAI	GACNNNNGTC	1 cut(s)	1484
BstSCI	CCNGG	7 cut(s)	246, 304, 318, 436, 824, 1521, 1851
BstSFI	CTRYAG	1 cut(s)	1644
BstSLI	GKGCMC	1 cut(s)	1302
BstUI	CGCG	2 cut(s)	326, 1849
BstV1I	GCAGC	4 cut(s)	288, 808, 824, 1776
BstV2I	GAAGAC	1 cut(s)	16
BstXI	CCANNNNNNTGG	1 cut(s)	254
Bsu15I	ATCGAT	1 cut(s)	999
BsuI	GTATCC	1 cut(s)	1330
BsuRI	GGCC	7 cut(s)	338, 413, 586, 596, 829, 1596, 1823
BsuTUI	ATCGAT	1 cut(s)	999
BtgI	CCRYGG	1 cut(s)	655
BtsCI	GGATG	8 cut(s)	289, 724, 982, 1177, 1210, 1307, 1321, 1615
BtsI	GCAGTG	1 cut(s)	1228
BtsIMutI	CAGTG	2 cut(s)	1228, 1333
BveI	ACCTGC	1 cut(s)	445
Cac8I	GCNNGC	3 cut(s)	289, 395, 1240
CfoI	GCGC	3 cut(s)	205, 883, 1851
Cfr10I	RCCGGY	2 cut(s)	199, 1619
Cfr13I	GGNCC	5 cut(s)	440, 585, 595, 673, 1822
ClaI	ATCGAT	1 cut(s)	999
CseI	GACGC	2 cut(s)	332, 888
Csp6I	GTAC	4 cut(s)	91, 644, 1454, 1580
CviAII	CATG	6 cut(s)	647, 656, 845, 896, 971, 1785
CviQI	GTAC	4 cut(s)	91, 644, 1454, 1580
DdeI	CTNAG	5 cut(s)	23, 174, 402, 1690, 1796
DinI	GGCGCC	1 cut(s)	204
DpnI	GATC	6 cut(s)	5, 432, 1424, 1518, 1569, 1761
DpnII	GATC	6 cut(s)	3, 430, 1422, 1516, 1567, 1759
EaeI	YGGCCR	1 cut(s)	1594
Eam1104I	CTCTTC	7 cut(s)	37, 39, 423, 705, 999, 1182, 1580
EarI	CTCTTC	7 cut(s)	37, 39, 423, 705, 999, 1182, 1580
Ecl136II	GAGCTC	1 cut(s)	216
Eco130I	CCWWGG	2 cut(s)	655, 761
Eco24I	GRGCYC	3 cut(s)	218, 1240, 1395
Eco31I	GGTCTC	2 cut(s)	41, 1427
Eco32I	GATATC	2 cut(s)	1267, 1551
Eco47I	GGWCC	2 cut(s)	440, 673
Eco53kI	GAGCTC	1 cut(s)	216
Eco57I	CTGAAG	1 cut(s)	287
Eco88I	CYCGRG	1 cut(s)	1604
EcoICRI	GAGCTC	1 cut(s)	216
EcoO109I	RGGNCCY	2 cut(s)	440, 595
EcoRII	CCWGG	5 cut(s)	246, 318, 436, 824, 1851
EcoRV	GATATC	2 cut(s)	1267, 1551
EcoT14I	CCWWGG	2 cut(s)	655, 761
EcoT22I	ATGCAT	1 cut(s)	1786
EcoT38I	GRGCYC	3 cut(s)	218, 1240, 1395
EgeI	GGCGCC	1 cut(s)	204
EheI	GGCGCC	1 cut(s)	204
ErhI	CCWWGG	2 cut(s)	655, 761
Esp3I	CGTCTC	2 cut(s)	151, 174
FaeI	CATG	6 cut(s)	650, 659, 848, 899, 974, 1788
FalI	AAGNNNNNCTT	2 cut(s)	332, 364
FaqI	GGGAC	3 cut(s)	264, 659, 1869
FatI	CATG	6 cut(s)	646, 655, 844, 895, 970, 1784
FauI	CCCGC	1 cut(s)	264
FbaI	TGATCA	2 cut(s)	3, 1567
Fnu4HI	GCNGC	8 cut(s)	164, 302, 327, 330, 723, 813, 822, 1790
FokI	GGATG	8 cut(s)	296, 731, 969, 1184, 1217, 1294, 1328, 1622
FriOI	GRGCYC	3 cut(s)	218, 1240, 1395
Fsp4HI	GCNGC	8 cut(s)	164, 302, 327, 330, 723, 813, 822, 1790
FspBI	CTAG	6 cut(s)	425, 695, 777, 800, 959, 1413
GlaI	GCGC	3 cut(s)	204, 882, 1850
GluI	GCNGC	8 cut(s)	164, 302, 327, 330, 723, 813, 822, 1790
GsuI	CTGGAG	2 cut(s)	230, 1725
HaeII	RGCGCY	2 cut(s)	206, 884
HaeIII	GGCC	7 cut(s)	338, 413, 586, 596, 829, 1596, 1823
HgaI	GACGC	2 cut(s)	332, 888
HhaI	GCGC	3 cut(s)	205, 883, 1851
Hin1I	GRCGYC	2 cut(s)	144, 203
Hin1II	CATG	6 cut(s)	650, 659, 848, 899, 974, 1788
Hin6I	GCGC	3 cut(s)	203, 881, 1849
HinP1I	GCGC	3 cut(s)	203, 881, 1849
HincII	GTYRAC	1 cut(s)	472
HindII	GTYRAC	1 cut(s)	472
HindIII	AAGCTT	1 cut(s)	603
HpaI	GTTAAC	1 cut(s)	472
HphI	GGTGA	3 cut(s)	50, 61, 760
Hpy166II	GTNNAC	1 cut(s)	472
Hpy188III	TCNNGA	4 cut(s)	182, 833, 1348, 1604
Hpy8I	GTNNAC	1 cut(s)	472
Hpy99I	CGWCG	4 cut(s)	41, 131, 134, 554
HpyAV	CCTTC	6 cut(s)	328, 619, 902, 1456, 1654, 1782
HpyCH4III	ACNGT	5 cut(s)	52, 554, 952, 1102, 1377
HpyCH4IV	ACGT	3 cut(s)	144, 408, 562
HpyCH4V	TGCA	3 cut(s)	454, 639, 1784
HpyF10VI	GCNNNNNNNGC	6 cut(s)	335, 602, 818, 821, 857, 1848
HpyF3I	CTNAG	5 cut(s)	23, 174, 402, 1690, 1796
HpySE526I	ACGT	3 cut(s)	144, 408, 562
Hsp92I	GRCGYC	2 cut(s)	144, 203
Hsp92II	CATG	6 cut(s)	650, 659, 848, 899, 974, 1788
HspAI	GCGC	3 cut(s)	203, 881, 1849
KasI	GGCGCC	1 cut(s)	202
Kpn2I	TCCGGA	1 cut(s)	181
Ksp22I	TGATCA	2 cut(s)	3, 1567
KspAI	GTTAAC	1 cut(s)	472
Kzo9I	GATC	6 cut(s)	3, 430, 1422, 1516, 1567, 1759
LguI	GCTCTTC	1 cut(s)	705
LmnI	GCTCC	3 cut(s)	221, 1360, 1847
Lsp1109I	GCAGC	4 cut(s)	288, 808, 824, 1776
LweI	GCATC	8 cut(s)	274, 709, 901, 999, 1162, 1195, 1306, 1771
MaeI	CTAG	6 cut(s)	425, 695, 777, 800, 959, 1413
MaeII	ACGT	3 cut(s)	144, 408, 562
MaeIII	GTNAC	4 cut(s)	52, 1328, 1612, 1863
MalI	GATC	6 cut(s)	5, 432, 1424, 1518, 1569, 1761
MboI	GATC	6 cut(s)	3, 430, 1422, 1516, 1567, 1759
MhlI	GDGCHC	5 cut(s)	218, 1240, 1302, 1365, 1395
MlsI	TGGCCA	1 cut(s)	1596
MluCI	AATT	3 cut(s)	684, 1248, 1696
MluNI	TGGCCA	1 cut(s)	1596
Mly113I	GGCGCC	1 cut(s)	203
MlyI	GAGTC	6 cut(s)	9, 49, 604, 1080, 1805, 1879
MmeI	TCCRAC	5 cut(s)	60, 150, 174, 261, 927
Mox20I	TGGCCA	1 cut(s)	1596
Mph1103I	ATGCAT	1 cut(s)	1786
MroI	TCCGGA	1 cut(s)	181
MroXI	GAANNNNTTC	1 cut(s)	1676
MscI	TGGCCA	1 cut(s)	1596
MseI	TTAA	4 cut(s)	260, 471, 1278, 1467
MslI	CAYNNNNRTG	2 cut(s)	932, 1199
Msp20I	TGGCCA	1 cut(s)	1596
MspCI	CTTAAG	1 cut(s)	259
MspR9I	CCNGG	7 cut(s)	248, 306, 320, 438, 826, 1523, 1853
Mva1269I	GAATGC	1 cut(s)	927
MvaI	CCWGG	5 cut(s)	248, 320, 438, 826, 1853
MvnI	CGCG	2 cut(s)	326, 1849
MwoI	GCNNNNNNNGC	6 cut(s)	335, 602, 818, 821, 857, 1848
NarI	GGCGCC	1 cut(s)	203
NciI	CCSGG	2 cut(s)	306, 1523
NcoI	CCATGG	1 cut(s)	655
NdeII	GATC	6 cut(s)	3, 430, 1422, 1516, 1567, 1759
NlaIII	CATG	6 cut(s)	650, 659, 848, 899, 974, 1788
NlaIV	GGNNCC	5 cut(s)	102, 204, 530, 675, 1128
NmuCI	GTSAC	4 cut(s)	52, 1328, 1612, 1863
NsiI	ATGCAT	1 cut(s)	1786
NspI	RCATGY	2 cut(s)	650, 974
NspV	TTCGAA	2 cut(s)	313, 876
PciI	ACATGT	1 cut(s)	646
PciSI	GCTCTTC	1 cut(s)	705
PctI	GAATGC	1 cut(s)	927
PdmI	GAANNNNTTC	1 cut(s)	1676
PfeI	GAWTC	5 cut(s)	185, 376, 1019, 1120, 1558
PfoI	TCCNGGA	1 cut(s)	436
PkrI	GCNGC	8 cut(s)	165, 303, 328, 331, 724, 814, 823, 1791
PleI	GAGTC	6 cut(s)	9, 49, 604, 1080, 1805, 1878
PluTI	GGCGCC	1 cut(s)	206
PpsI	GAGTC	6 cut(s)	9, 49, 604, 1080, 1805, 1878
PpuMI	RGGWCCY	1 cut(s)	440
PscI	ACATGT	1 cut(s)	646
PshAI	GACNNNNGTC	1 cut(s)	1484
Psp124BI	GAGCTC	1 cut(s)	218
Psp5II	RGGWCCY	1 cut(s)	440
Psp6I	CCWGG	5 cut(s)	246, 318, 436, 824, 1851
PspGI	CCWGG	5 cut(s)	246, 318, 436, 824, 1851
PspN4I	GGNNCC	5 cut(s)	102, 204, 530, 675, 1128
PspPI	GGNCC	5 cut(s)	440, 585, 595, 673, 1822
PspPPI	RGGWCCY	1 cut(s)	440
RsaI	GTAC	4 cut(s)	92, 645, 1455, 1581
RsaNI	GTAC	4 cut(s)	91, 644, 1454, 1580
RseI	CAYNNNNRTG	2 cut(s)	932, 1199
SacI	GAGCTC	1 cut(s)	218
SapI	GCTCTTC	1 cut(s)	705
SaqAI	TTAA	4 cut(s)	260, 471, 1278, 1467
SatI	GCNGC	8 cut(s)	164, 302, 327, 330, 723, 813, 822, 1790
Sau3AI	GATC	6 cut(s)	3, 430, 1422, 1516, 1567, 1759
Sau96I	GGNCC	5 cut(s)	440, 585, 595, 673, 1822
SchI	GAGTC	6 cut(s)	9, 49, 604, 1080, 1805, 1879
ScrFI	CCNGG	7 cut(s)	248, 306, 320, 438, 826, 1523, 1853
SduI	GDGCHC	5 cut(s)	218, 1240, 1302, 1365, 1395
SfaNI	GCATC	8 cut(s)	274, 709, 901, 999, 1162, 1195, 1306, 1771
SfcI	CTRYAG	1 cut(s)	1644
SfoI	GGCGCC	1 cut(s)	204
SfuI	TTCGAA	2 cut(s)	313, 876
SgrAI	CRCCGGYG	1 cut(s)	199
SinI	GGWCC	2 cut(s)	440, 673
SmiMI	CAYNNNNRTG	2 cut(s)	932, 1199
SmlI	CTYRAG	3 cut(s)	259, 533, 1751
SmoI	CTYRAG	3 cut(s)	259, 533, 1751
Sse9I	AATT	3 cut(s)	684, 1248, 1696
SsiI	CCGC	8 cut(s)	164, 222, 271, 326, 329, 387, 722, 1542
SspDI	GGCGCC	1 cut(s)	202
SspMI	CTAG	6 cut(s)	425, 695, 777, 800, 959, 1413
SstI	GAGCTC	1 cut(s)	218
StyD4I	CCNGG	7 cut(s)	246, 304, 318, 436, 824, 1521, 1851
StyI	CCWWGG	2 cut(s)	655, 761
TaaI	ACNGT	5 cut(s)	52, 554, 952, 1102, 1377
TaiI	ACGT	3 cut(s)	147, 411, 565
TaqI	TCGA	7 cut(s)	313, 351, 542, 708, 876, 999, 1421
TaqII	GACCGA	1 cut(s)	563
TasI	AATT	3 cut(s)	684, 1248, 1696
TatI	WGTACW	2 cut(s)	643, 1579
TauI	GCSGC	4 cut(s)	166, 329, 332, 725
TfiI	GAWTC	5 cut(s)	185, 376, 1019, 1120, 1558
Tru1I	TTAA	4 cut(s)	260, 471, 1278, 1467
Tru9I	TTAA	4 cut(s)	260, 471, 1278, 1467
TscAI	CASTG	2 cut(s)	1228, 1333
TseFI	GTSAC	4 cut(s)	52, 1328, 1612, 1863
TseI	GCWGC	4 cut(s)	301, 812, 821, 1789
Tsp45I	GTSAC	4 cut(s)	52, 1328, 1612, 1863
TspGWI	ACGGA	1 cut(s)	742
TspRI	CASTG	2 cut(s)	1228, 1333
Vha464I	CTTAAG	1 cut(s)	259
VpaK11BI	GGWCC	2 cut(s)	440, 673
XapI	RAATTY	1 cut(s)	1696
XceI	RCATGY	2 cut(s)	650, 974
XmnI	GAANNNNTTC	1 cut(s)	1676
XspI	CTAG	6 cut(s)	425, 695, 777, 800, 959, 1413
ZraI	GACGTC	1 cut(s)	145
Zsp2I	ATGCAT	1 cut(s)	1786

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.