MD14G1210500.v1.1

RNA polymerase-associated protein

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr14
Physical Location & Seq
Forward (+)
29616320 .. 29622125
5806 bp
Loading structure...
UTR
Exon/CDS
Intron
MD14G1210500.v1.1.491

Sequence Viewer

Length: 1830 bp
ATGGGGGAGGAGAAGCGGCACCAGATGATGCAGAACCTGTTCGGAGATCAATCCGAAGAGGAAGAGGAAGAGGTCGATTCCGAGCACGAGTCCAATCCCCAGCCCAATTCTGATGAAGGAGAGGGCGCTGTGGAGGCTGAGGGTGAAGGTGAAGTAGAGGGTCAGGGGGAGGTGGAAGTAGAGAGTGATGTTGAGCAGCGTAATGCTGATCCTGATCCAGGAGAAAGTGAGGGCGAAAGAGAACAAAGTTCCCAAGAAGTAGACATTGGTGATCATAGAGAAGAAAGTGAAGGAAAATATACAGACACGGATGAAAAAGAAGAGTTAACCAGCAGGAGACGAAATGTGATTGAAAGTGGGTCTGAGAGATCCGAGGAAAACCATTACCCTGACAATGAAGACGACGTTAATCAGGTCATAAGTCCAAGTAGATCCCCTGAGGAGGAGGAACATACTAACATCGCACACTCTGCTGTTCGCAATGTATTTGGTGACTCTGATGAAGAAGAAGAAGAAGAGACAGATTTTCGGAATGACATTCAGCATGAATCAAATAGATCACCAATGGAAGAGGAAGGAAGCTATGGAAGGAGTCCAATACTAGAGGATGTAATGCCTGATGAAGGTGCTAGATATGATTCAGAAGAGGACAATATTGAGGCTAAACCTAGAGATAAACCAGTTGGCCCCCCATTGGAGCTAGAGATTCCACTACGCCCACCTCCTGCTTGTCCAGAAAAGATGAACATGATCAAAGTTTCAAATATCATGGGCATCGACCCCAAACCGTTTGATCCAAAGACATATGTGGAAGAAGATACGTTTGTGACAGATGAATCAGGATCTAAGAAACGTATTCGTTTGGAGAACAATATTGTGCGCTGGAGGAGGGTTAGAAATCCAGATGGCACAACAACTAGTGAAAGCAACACACGCTTTGTGAGATGGTCTGATGGCAGTTTGCAGCTGTTGATTGGGAATGAAGTTCTAGATATATCTGTGCAAGAAGCACAGCATGATCAAGCACACCTATTTCTCAGGCACGAAAAGGGAATCCTTCAATCACAAGGAAAAGTTCTGAAGAAGATGAGGTTCATGCCATCATCCTTGACATCAAATTCACATCGACTGCTGACTGCTCTGGTTGATTCTCGACATAAAAAAGTATACAAGGTCAAGAACTGTGTTACTGACATCGATCCTGAGAGGGAAAAGGAGGAGAAAGAAAGGGCCGAAAGTCAAAATATCAGAGCTAATTTACTTCTTAATCGGAAGAGGGAGAAGGTGAGCCGAAAGTATACAACAACTGGGGACAGGAGGCGCCAACTTTCACCTGGTTTCTTGGAAGATGCTCTTGATGAGGATGAAGAACCAAATTATCATGAGTCTCGTAATTCTCGCCGCCATATGGAGGAGGATTTTGAAATGGAAGCTCGAAGAGAGAAACGCATTTTGAATGCTAAGAAGGGACCTAAAGACATCCCTCGCAAGTCATCCTTGCCAACTGCCAAATCATCTCGGCGTTCAATGGGTTTGTCTGATAGTGAGAAAGACGAGTCTGAGTATGAAACTGATGGGGAAGATGTTGAGCCTCCACATAAGATGGCTGAGGATTCAGAGCCAGAGTATGAAGATTCGGAAGAAGAAGATGACGAAGAACATCATGATGCCGAGGTTAATGATGCCTCAGAGTTGGAGGCTGAGGTGCCCAAGCAAAGGGTTAAGGACTCTGGACACAAGCGCAAGGCAATCGAGTCAGATGAAGACTCACCTCCAAGGAAGGCCGCGCCACATCGCAGAATGGCTGTTTATGATAGTGATGAGGACTAA

Protein Analysis

610

Amino Acids

69.96

Weight (kDa)

4.62

Isoelectric Point (pI)

84.98

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Leo1 PF04004 250 - 409 1.6e-48 Leo1-like protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 3 cut(s) 18, 1320, 1705
AccI GTMKAC 3 cut(s) 261, 1167, 1298
AccII CGCG 1 cut(s) 1787
AciI CCGC 3 cut(s) 16, 1402, 1785
AclWI GGATC 7 cut(s) 203, 209, 363, 426, 788, 850, 1193
AcsI RAATTY 1 cut(s) 1117
AcuI CTGAAG 1 cut(s) 1100
AcyI GRCGYC 1 cut(s) 1321
AfiI CCNNNNNNNGG 7 cut(s) 218, 442, 623, 694, 1408, 1411, 1716
AgsI TTSAA 6 cut(s) 353, 762, 1061, 1424, 1456, 1527
AhlI ACTAGT 1 cut(s) 917
AjnI CCWGG 2 cut(s) 217, 1333
AjuI GAANNNNNNNTTGG 2 cut(s) 249, 281
AluBI AGCT 5 cut(s) 582, 700, 967, 1253, 1433
AluI AGCT 5 cut(s) 582, 700, 967, 1253, 1433
Alw21I GWGCWC 1 cut(s) 87
Alw26I GTCTC 3 cut(s) 331, 512, 1392
AlwI GGATC 7 cut(s) 203, 209, 363, 426, 788, 850, 1193
AlwNI CAGNNNCTG 1 cut(s) 37
AoxI GGCC 3 cut(s) 685, 1230, 1782
ApeKI GCWGC 2 cut(s) 196, 964
ApoI RAATTY 1 cut(s) 1117
Asp700I GAANNNNTTC 1 cut(s) 38
AspLEI GCGC 5 cut(s) 128, 882, 1323, 1743, 1789
AspS9I GGNCC 3 cut(s) 686, 1230, 1469
AsuHPI GGTGA 8 cut(s) 155, 161, 281, 503, 552, 1297, 1323, 1761
AvaII GGWCC 1 cut(s) 1469
AxyI CCTNAGG 1 cut(s) 438
BaeGI GKGCMC 1 cut(s) 1710
BaeI ACNNNNGTAYC 2 cut(s) 810, 843
BanI GGYRCC 3 cut(s) 18, 1320, 1705
BauI CACGAG 1 cut(s) 86
BbsI GAAGAC 2 cut(s) 405, 1770
Bbv12I GWGCWC 1 cut(s) 87
BbvCI CCTCAGC 3 cut(s) 138, 1608, 1701
BbvI GCAGC 2 cut(s) 208, 976
BccI CCATC 6 cut(s) 899, 939, 947, 1108, 1568, 1597
BcgI CGANNNNNNTGC 2 cut(s) 1732, 1766
BciT130I CCWGG 2 cut(s) 219, 1335
BclI TGATCA 3 cut(s) 271, 750, 1018
BcoDI GTCTC 3 cut(s) 331, 512, 1392
BcuI ACTAGT 1 cut(s) 917
BfaI CTAG 6 cut(s) 602, 630, 669, 701, 918, 989
BfoI RGCGCY 2 cut(s) 129, 1324
BisI GCNGC 5 cut(s) 17, 197, 965, 1402, 1785
BlsI GCNGC 5 cut(s) 18, 198, 966, 1403, 1786
Bme1390I CCNGG 2 cut(s) 219, 1335
Bme18I GGWCC 1 cut(s) 1469
BmgT120I GGNCC 3 cut(s) 686, 1230, 1469
BmiI GGNNCC 5 cut(s) 20, 688, 1322, 1470, 1707
BmrFI CCNGG 2 cut(s) 219, 1335
BmrI ACTGGG 1 cut(s) 1317
BmsI GCATC 5 cut(s) 18, 783, 1339, 1657, 1672
BmuI ACTGGG 1 cut(s) 1317
BpiI GAAGAC 2 cut(s) 405, 1770
BpmI CTGGAG 1 cut(s) 904
Bpu10I CCTNAGC 3 cut(s) 138, 1608, 1701
Bsa29I ATCGAT 1 cut(s) 1197
BsaBI GATNNNNATC 1 cut(s) 213
BsaHI GRCGYC 1 cut(s) 1321
BsaJI CCNNGG 3 cut(s) 372, 1671, 1775
Bsc4I CCNNNNNNNGG 7 cut(s) 218, 442, 623, 694, 1408, 1411, 1716
Bse1I ACTGG 2 cut(s) 680, 1312
Bse21I CCTNAGG 1 cut(s) 438
Bse3DI GCAATG 1 cut(s) 487
Bse8I GATNNNNATC 1 cut(s) 213
BseBI CCWGG 2 cut(s) 219, 1335
BseCI ATCGAT 1 cut(s) 1197
BseDI CCNNGG 3 cut(s) 372, 1671, 1775
BseGI GGATG 6 cut(s) 316, 613, 1103, 1369, 1479, 1493
BseJI GATNNNNATC 1 cut(s) 213
BseLI CCNNNNNNNGG 7 cut(s) 218, 442, 623, 694, 1408, 1411, 1716
BseMI GCAATG 1 cut(s) 487
BseMII CTCAG 9 cut(s) 129, 354, 429, 1051, 1194, 1551, 1599, 1692, 1701
BseNI ACTGG 2 cut(s) 680, 1312
BseRI GAGGAG 6 cut(s) 23, 455, 458, 901, 1232, 1427
BseSI GKGCMC 1 cut(s) 1710
BseXI GCAGC 2 cut(s) 208, 976
BseYI CCCAGC 1 cut(s) 99
Bsh1236I CGCG 1 cut(s) 1787
BshFI GGCC 3 cut(s) 687, 1232, 1784
BshNI GGYRCC 3 cut(s) 18, 1320, 1705
BshVI ATCGAT 1 cut(s) 1197
BsiHKAI GWGCWC 1 cut(s) 87
BslFI GGGAC 2 cut(s) 1325, 1482
BslI CCNNNNNNNGG 7 cut(s) 218, 442, 623, 694, 1408, 1411, 1716
BsmAI GTCTC 3 cut(s) 331, 512, 1392
BsmBI CGTCTC 1 cut(s) 331
BsmFI GGGAC 2 cut(s) 1325, 1482
BsmI GAATGC 1 cut(s) 1462
BsnI GGCC 3 cut(s) 687, 1232, 1784
Bsp1286I GDGCHC 2 cut(s) 87, 1710
BspACI CCGC 3 cut(s) 16, 1402, 1785
BspANI GGCC 3 cut(s) 687, 1232, 1784
BspCNI CTCAG 9 cut(s) 130, 355, 430, 1050, 1195, 1552, 1600, 1693, 1700
BspDI ATCGAT 1 cut(s) 1197
BspFNI CGCG 1 cut(s) 1787
BspHI TCATGA 2 cut(s) 1381, 1663
BspLI GGNNCC 5 cut(s) 20, 688, 1322, 1470, 1707
BspPI GGATC 7 cut(s) 203, 209, 363, 426, 788, 850, 1193
BspT107I GGYRCC 3 cut(s) 18, 1320, 1705
BsrDI GCAATG 1 cut(s) 487
BsrI ACTGG 2 cut(s) 680, 1312
BssECI CCNNGG 3 cut(s) 372, 1671, 1775
BssNAI GTATAC 2 cut(s) 1168, 1299
BssNI GRCGYC 1 cut(s) 1321
BssSI CACGAG 1 cut(s) 86
BssT1I CCWWGG 1 cut(s) 1775
Bst1107I GTATAC 2 cut(s) 1168, 1299
Bst2BI CACGAG 1 cut(s) 86
Bst2UI CCWGG 2 cut(s) 219, 1335
Bst4CI ACNGT 2 cut(s) 789, 1184
Bst6I CTCTTC 9 cut(s) 51, 57, 63, 315, 510, 564, 639, 1268, 1432
BstACI GRCGYC 1 cut(s) 1321
BstAPI GCANNNNNTGC 1 cut(s) 470
BstENI CCTNNNNNAGG 2 cut(s) 216, 621
BstF5I GGATG 6 cut(s) 316, 613, 1103, 1369, 1479, 1493
BstFNI CGCG 1 cut(s) 1787
BstH2I RGCGCY 2 cut(s) 129, 1324
BstHHI GCGC 5 cut(s) 128, 882, 1323, 1743, 1789
BstMAI GTCTC 3 cut(s) 331, 512, 1392
BstMWI GCNNNNNNNGC 3 cut(s) 134, 470, 933
BstNI CCWGG 2 cut(s) 219, 1335
BstSCI CCNGG 2 cut(s) 217, 1333
BstSLI GKGCMC 1 cut(s) 1710
BstUI CGCG 1 cut(s) 1787
BstV1I GCAGC 2 cut(s) 208, 976
BstV2I GAAGAC 2 cut(s) 405, 1770
BstX2I RGATCY 3 cut(s) 368, 431, 842
BstYI RGATCY 3 cut(s) 368, 431, 842
BstZ17I GTATAC 2 cut(s) 1168, 1299
Bsu15I ATCGAT 1 cut(s) 1197
Bsu36I CCTNAGG 1 cut(s) 438
BsuRI GGCC 3 cut(s) 687, 1232, 1784
BsuTUI ATCGAT 1 cut(s) 1197
BtgZI GCGATG 2 cut(s) 445, 1778
BtsCI GGATG 6 cut(s) 316, 613, 1103, 1369, 1479, 1493
CaiI CAGNNNCTG 1 cut(s) 37
CciI TCATGA 2 cut(s) 1381, 1663
CfoI GCGC 5 cut(s) 128, 882, 1323, 1743, 1789
Cfr13I GGNCC 3 cut(s) 686, 1230, 1469
ClaI ATCGAT 1 cut(s) 1197
CsiI ACCWGGT 1 cut(s) 1333
CviAII CATG 7 cut(s) 545, 748, 769, 1016, 1096, 1382, 1664
DinI GGCGCC 1 cut(s) 1322
Eam1104I CTCTTC 9 cut(s) 51, 57, 63, 315, 510, 564, 639, 1268, 1432
EarI CTCTTC 9 cut(s) 51, 57, 63, 315, 510, 564, 639, 1268, 1432
Eco130I CCWWGG 1 cut(s) 1775
Eco47I GGWCC 1 cut(s) 1469
Eco57I CTGAAG 1 cut(s) 1100
Eco81I CCTNAGG 1 cut(s) 438
EcoNI CCTNNNNNAGG 2 cut(s) 216, 621
EcoO109I RGGNCCY 1 cut(s) 1469
EcoRII CCWGG 2 cut(s) 217, 1333
EcoT14I CCWWGG 1 cut(s) 1775
EgeI GGCGCC 1 cut(s) 1322
EheI GGCGCC 1 cut(s) 1322
ErhI CCWWGG 1 cut(s) 1775
Esp3I CGTCTC 1 cut(s) 331
FaeI CATG 7 cut(s) 548, 751, 772, 1019, 1099, 1385, 1667
FalI AAGNNNNNCTT 4 cut(s) 1338, 1370, 1481, 1513
FaqI GGGAC 2 cut(s) 1325, 1482
FatI CATG 7 cut(s) 544, 747, 768, 1015, 1095, 1381, 1663
FauNDI CATATG 2 cut(s) 805, 1407
FbaI TGATCA 3 cut(s) 271, 750, 1018
FblI GTMKAC 3 cut(s) 261, 1167, 1298
Fnu4HI GCNGC 5 cut(s) 17, 197, 965, 1402, 1785
FokI GGATG 6 cut(s) 323, 620, 1090, 1376, 1466, 1480
Fsp4HI GCNGC 5 cut(s) 17, 197, 965, 1402, 1785
FspBI CTAG 6 cut(s) 602, 630, 669, 701, 918, 989
GlaI GCGC 5 cut(s) 127, 881, 1322, 1742, 1788
GluI GCNGC 5 cut(s) 17, 197, 965, 1402, 1785
GsaI CCCAGC 1 cut(s) 103
GsuI CTGGAG 1 cut(s) 904
HaeII RGCGCY 2 cut(s) 129, 1324
HaeIII GGCC 3 cut(s) 687, 1232, 1784
HhaI GCGC 5 cut(s) 128, 882, 1323, 1743, 1789
Hin1I GRCGYC 1 cut(s) 1321
Hin1II CATG 7 cut(s) 548, 751, 772, 1019, 1099, 1385, 1667
Hin6I GCGC 5 cut(s) 126, 880, 1321, 1741, 1787
HinP1I GCGC 5 cut(s) 126, 880, 1321, 1741, 1787
HincII GTYRAC 1 cut(s) 327
HindII GTYRAC 1 cut(s) 327
HpaI GTTAAC 1 cut(s) 327
HphI GGTGA 8 cut(s) 155, 161, 281, 503, 552, 1297, 1323, 1761
Hpy166II GTNNAC 4 cut(s) 262, 327, 1168, 1299
Hpy8I GTNNAC 4 cut(s) 262, 327, 1168, 1299
Hpy99I CGWCG 1 cut(s) 407
HpyCH4III ACNGT 2 cut(s) 789, 1184
HpyCH4IV ACGT 3 cut(s) 405, 821, 853
HpyCH4V TGCA 3 cut(s) 31, 964, 1003
HpyF10VI GCNNNNNNNGC 3 cut(s) 134, 470, 933
HpySE526I ACGT 3 cut(s) 405, 821, 853
Hsp92I GRCGYC 1 cut(s) 1321
Hsp92II CATG 7 cut(s) 548, 751, 772, 1019, 1099, 1385, 1667
HspAI GCGC 5 cut(s) 126, 880, 1321, 1741, 1787
KasI GGCGCC 1 cut(s) 1320
Ksp22I TGATCA 3 cut(s) 271, 750, 1018
KspAI GTTAAC 1 cut(s) 327
LmnI GCTCC 1 cut(s) 697
Lsp1109I GCAGC 2 cut(s) 208, 976
LweI GCATC 5 cut(s) 18, 783, 1339, 1657, 1672
MabI ACCWGGT 1 cut(s) 1333
MaeI CTAG 6 cut(s) 602, 630, 669, 701, 918, 989
MaeII ACGT 3 cut(s) 405, 821, 853
MaeIII GTNAC 3 cut(s) 491, 826, 1186
MflI RGATCY 3 cut(s) 368, 431, 842
MhlI GDGCHC 2 cut(s) 87, 1710
MluCI AATT 5 cut(s) 106, 1117, 1255, 1375, 1393
Mly113I GGCGCC 1 cut(s) 1321
MlyI GAGTC 8 cut(s) 98, 488, 601, 1394, 1565, 1721, 1760, 1763
MmeI TCCRAC 1 cut(s) 1674
MroXI GAANNNNTTC 1 cut(s) 38
MseI TTAA 5 cut(s) 326, 408, 1266, 1677, 1722
MslI CAYNNNNRTG 1 cut(s) 1665
MspA1I CMGCKG 1 cut(s) 967
MspR9I CCNGG 2 cut(s) 219, 1335
Mva1269I GAATGC 1 cut(s) 1462
MvaI CCWGG 2 cut(s) 219, 1335
MvnI CGCG 1 cut(s) 1787
MwoI GCNNNNNNNGC 3 cut(s) 134, 470, 933
NarI GGCGCC 1 cut(s) 1321
NdeI CATATG 2 cut(s) 805, 1407
NlaIII CATG 7 cut(s) 548, 751, 772, 1019, 1099, 1385, 1667
NlaIV GGNNCC 5 cut(s) 20, 688, 1322, 1470, 1707
NmeAIII GCCGAG 2 cut(s) 1498, 1696
NmuCI GTSAC 2 cut(s) 491, 826
PagI TCATGA 2 cut(s) 1381, 1663
PctI GAATGC 1 cut(s) 1462
PdmI GAANNNNTTC 1 cut(s) 38
PfeI GAWTC 9 cut(s) 77, 548, 638, 706, 836, 1053, 1148, 1613, 1634
PfoI TCCNGGA 1 cut(s) 217
PkrI GCNGC 5 cut(s) 18, 198, 966, 1403, 1786
PleI GAGTC 8 cut(s) 97, 488, 600, 1393, 1564, 1721, 1760, 1762
PluTI GGCGCC 1 cut(s) 1324
PpsI GAGTC 8 cut(s) 97, 488, 600, 1393, 1564, 1721, 1760, 1762
PpuMI RGGWCCY 1 cut(s) 1469
Psp5II RGGWCCY 1 cut(s) 1469
Psp6I CCWGG 2 cut(s) 217, 1333
PspFI CCCAGC 1 cut(s) 99
PspGI CCWGG 2 cut(s) 217, 1333
PspN4I GGNNCC 5 cut(s) 20, 688, 1322, 1470, 1707
PspPI GGNCC 3 cut(s) 686, 1230, 1469
PspPPI RGGWCCY 1 cut(s) 1469
PstNI CAGNNNCTG 1 cut(s) 37
PsuI RGATCY 3 cut(s) 368, 431, 842
PvuII CAGCTG 1 cut(s) 967
RseI CAYNNNNRTG 1 cut(s) 1665
SaqAI TTAA 5 cut(s) 326, 408, 1266, 1677, 1722
SatI GCNGC 5 cut(s) 17, 197, 965, 1402, 1785
Sau96I GGNCC 3 cut(s) 686, 1230, 1469
SchI GAGTC 8 cut(s) 98, 488, 601, 1394, 1565, 1721, 1760, 1763
ScrFI CCNGG 2 cut(s) 219, 1335
SduI GDGCHC 2 cut(s) 87, 1710
SexAI ACCWGGT 1 cut(s) 1333
SfaNI GCATC 5 cut(s) 18, 783, 1339, 1657, 1672
SfoI GGCGCC 1 cut(s) 1322
SinI GGWCC 1 cut(s) 1469
SmiMI CAYNNNNRTG 1 cut(s) 1665
SpeI ACTAGT 1 cut(s) 917
Sse9I AATT 5 cut(s) 106, 1117, 1255, 1375, 1393
SsiI CCGC 3 cut(s) 16, 1402, 1785
SspDI GGCGCC 1 cut(s) 1320
SspI AATATT 2 cut(s) 655, 874
SspMI CTAG 6 cut(s) 602, 630, 669, 701, 918, 989
StyD4I CCNGG 2 cut(s) 217, 1333
StyI CCWWGG 1 cut(s) 1775
TaaI ACNGT 2 cut(s) 789, 1184
TaiI ACGT 3 cut(s) 408, 824, 856
TaqI TCGA 7 cut(s) 75, 777, 1126, 1153, 1197, 1435, 1752
TasI AATT 5 cut(s) 106, 1117, 1255, 1375, 1393
TauI GCSGC 3 cut(s) 19, 1404, 1787
TfiI GAWTC 9 cut(s) 77, 548, 638, 706, 836, 1053, 1148, 1613, 1634
Tru1I TTAA 5 cut(s) 326, 408, 1266, 1677, 1722
Tru9I TTAA 5 cut(s) 326, 408, 1266, 1677, 1722
TseFI GTSAC 2 cut(s) 491, 826
TseI GCWGC 2 cut(s) 196, 964
Tsp45I GTSAC 2 cut(s) 491, 826
TspGWI ACGGA 1 cut(s) 323
VpaK11BI GGWCC 1 cut(s) 1469
XagI CCTNNNNNAGG 2 cut(s) 216, 621
XapI RAATTY 1 cut(s) 1117
XbaI TCTAGA 1 cut(s) 988
XcmI CCANNNNNNNNNTGG 1 cut(s) 1331
XmiI GTMKAC 3 cut(s) 261, 1167, 1298
XmnI GAANNNNTTC 1 cut(s) 38
XspI CTAG 6 cut(s) 602, 630, 669, 701, 918, 989
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.