pycom06g17740

RNA polymerase-associated protein

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr6
Physical Location & Seq
Forward (+)
21650622 .. 21654673
4052 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom06g17740.2

Sequence Viewer

Length: 1467 bp
ATGGAAAACCATTACCCTGACATTGAAGATGAGGTTAATCAGGCCAGAAGTTCAAGATCCCCTGAGGAGGAAGAGGACCATAATAACATCGCACACTCTGCTGTTCGTAATGTATTTGGTGACTCTGATGAAGAAGAAGAAGAAGAGGAGACAGATTATGCCGTTCGGAATGACATCCAGCATGAATCAAATAGATCACCAATGGAGGAGGAAGGCAGCTATGGAAAGAGTCCAAGACTAGAGGATGTGATGCCTGATGAAGATGCTAGGTATGATTCAGAAGAGGACAATATTGAGGCTAAACCTAGAGATAAACCGGTTGGCCCCCCATTGGAGCTAGAGATTCCACTACGTCCACCTCCTGCTCGTCCAGAAAAGATGAACATGATCAAAGTTTCAAATATCATGGGCATTGACCCCAAACCATTTGATCCAAAGACATATGTGGAAGAGGATACATTTGTGACGGATGAATCAGGATCTAAGAAGCGTATACGTTTGGAGAACAACATTGTGCGCTGGAGGAGAGTTAGAAATCCAGATGGCACGACAACTAGTGAAAGCAATGCACGTTTTGTGAGATGGTCTGATGGCAGTTTGCAGCTATTAATTGGGAATGAAGTTCTAGATATATCTGTGCAAGAAGCACAGCATGATCAAGCGCACCTATTTCTCAGGCATGAAAAGGGAATCCTCCAGTCACAAGGAAAGGTTCTGAAGAAGATGAGGTTTATGCCATCGTCCTTGACATCAAATTCACATCGTTTGCTGACTGCTCTGGTTGATTCTCGACATAAAAAAGTATACAAGGTCAAGAACTGCGTTACTGAGATCGATCCTGAGAGAGAAAAGGAGGAGAAAGAAAGGGCTGAAAGTCAAAATATCAGAGCTAATTTGCTTCTTAATCGGAAGAAGGAGAAGGTGAGCCGAAAGTATACAACAACTGGGGACAGGAGGCGCCAACTTTCACCTGGTTTCTTGGAAGATGCTCTTGATGAGGATGAAGAACCAAATTATCATGACTCTCGTCGTTCTCGCCGCCATATGGAGGAGGATTTCGAAATGGAAGCTCGAAGAGAGAAACGCATTTTAAATGCTAAGAAGTCACAGGGACCTAAAGATATCCCACGCAAGTCATCCTTGCCAACTGCCAATTCATATCGGCGTTCAATGGGTTTGTCAGACGAGTCTGAGTATGAGACTGATGGGGAAGATGAGGAGCCTCCACGTAAGATGGCTGAGGATTCAGAGCCAGAGTATGAAGATTCGGAAGAAGAAGATGAGGAAGAGCATCATGATGCCGAGGTTAATGATGCATCAGAGGAGGTGGAGGCTGAGGCGCCCAAGCAAAAGGTTAAGGACTCTGGACACAAGCGCAAGGCAGTCGAGTCAGATGAAGACTCTCCTCCTAGGAAGGCCGCACCACATCGCAGAATGGCTGTTGTTTATGATAGTGATGAGGAATAA

Protein Analysis

489

Amino Acids

56.57

Weight (kDa)

4.91

Isoelectric Point (pI)

88.66

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 2 cut(s) 957, 1339
AccI GTMKAC 3 cut(s) 493, 804, 935
AciI CCGC 2 cut(s) 1039, 1419
AclWI GGATC 4 cut(s) 51, 425, 487, 830
AcsI RAATTY 1 cut(s) 754
AcuI CTGAAG 1 cut(s) 737
AcyI GRCGYC 2 cut(s) 958, 1340
AfiI CCNNNNNNNGG 4 cut(s) 67, 331, 1045, 1048
AgeI ACCGGT 1 cut(s) 316
AgsI TTSAA 4 cut(s) 26, 54, 399, 1170
AhlI ACTAGT 1 cut(s) 554
AjnI CCWGG 1 cut(s) 970
AjuI GAANNNNNNNTTGG 2 cut(s) 1138, 1170
AluBI AGCT 5 cut(s) 219, 337, 604, 890, 1070
AluI AGCT 5 cut(s) 219, 337, 604, 890, 1070
Alw26I GTCTC 2 cut(s) 143, 1193
AlwI GGATC 4 cut(s) 51, 425, 487, 830
AoxI GGCC 3 cut(s) 42, 322, 1416
ApeKI GCWGC 2 cut(s) 216, 601
ApoI RAATTY 1 cut(s) 754
AseI ATTAAT 1 cut(s) 608
AsiGI ACCGGT 1 cut(s) 316
AspA2I CCTAGG 1 cut(s) 1409
AspLEI GCGC 5 cut(s) 519, 664, 960, 1342, 1377
AspS9I GGNCC 3 cut(s) 76, 323, 1112
AsuHPI GGTGA 4 cut(s) 131, 189, 934, 960
AsuII TTCGAA 1 cut(s) 1059
AvaII GGWCC 2 cut(s) 76, 1112
AvrII CCTAGG 1 cut(s) 1409
AxyI CCTNAGG 1 cut(s) 63
BaeI ACNNNNGTAYC 2 cut(s) 447, 480
BanI GGYRCC 2 cut(s) 957, 1339
BbsI GAAGAC 1 cut(s) 1404
BbvCI CCTCAGC 2 cut(s) 1239, 1335
BbvI GCAGC 2 cut(s) 228, 613
BccI CCATC 6 cut(s) 536, 576, 584, 745, 1199, 1228
BceAI ACGGC 1 cut(s) 146
BcgI CGANNNNNNTGC 2 cut(s) 1366, 1400
BciT130I CCWGG 1 cut(s) 972
BciVI GTATCC 1 cut(s) 448
BclI TGATCA 2 cut(s) 387, 655
BcoDI GTCTC 2 cut(s) 143, 1193
BcuI ACTAGT 1 cut(s) 554
BfaI CTAG 7 cut(s) 239, 267, 306, 338, 555, 626, 1410
BfoI RGCGCY 2 cut(s) 961, 1343
BfuI GTATCC 1 cut(s) 448
BisI GCNGC 4 cut(s) 217, 602, 1039, 1419
BlnI CCTAGG 1 cut(s) 1409
BlsI GCNGC 4 cut(s) 218, 603, 1040, 1420
Bme1390I CCNGG 1 cut(s) 972
Bme18I GGWCC 2 cut(s) 76, 1112
BmgT120I GGNCC 3 cut(s) 76, 323, 1112
BmiI GGNNCC 5 cut(s) 325, 959, 1113, 1221, 1341
BmrFI CCNGG 1 cut(s) 972
BmrI ACTGGG 1 cut(s) 954
BmsI GCATC 7 cut(s) 240, 253, 976, 1288, 1300, 1303, 1325
BmuI ACTGGG 1 cut(s) 954
BoxI GACNNNNGTC 1 cut(s) 1026
BpiI GAAGAC 1 cut(s) 1404
BpmI CTGGAG 2 cut(s) 541, 680
Bpu10I CCTNAGC 2 cut(s) 1239, 1335
Bpu14I TTCGAA 1 cut(s) 1059
Bsa29I ATCGAT 1 cut(s) 834
BsaAI YACGTR 1 cut(s) 1229
BsaHI GRCGYC 2 cut(s) 958, 1340
BsaJI CCNNGG 2 cut(s) 1302, 1409
BsaWI WCCGGW 1 cut(s) 316
Bsc4I CCNNNNNNNGG 4 cut(s) 67, 331, 1045, 1048
Bse118I RCCGGY 1 cut(s) 316
Bse1I ACTGG 2 cut(s) 697, 949
Bse21I CCTNAGG 1 cut(s) 63
Bse3DI GCAATG 1 cut(s) 571
BseBI CCWGG 1 cut(s) 972
BseCI ATCGAT 1 cut(s) 834
BseDI CCNNGG 2 cut(s) 1302, 1409
BseGI GGATG 5 cut(s) 174, 250, 475, 1006, 1136
BseLI CCNNNNNNNGG 4 cut(s) 67, 331, 1045, 1048
BseMI GCAATG 1 cut(s) 571
BseMII CTCAG 7 cut(s) 54, 688, 819, 831, 1182, 1230, 1326
BseNI ACTGG 2 cut(s) 697, 949
BseRI GAGGAG 9 cut(s) 80, 161, 221, 538, 869, 1064, 1232, 1337, 1395
BseXI GCAGC 2 cut(s) 228, 613
BshFI GGCC 3 cut(s) 44, 324, 1418
BshNI GGYRCC 2 cut(s) 957, 1339
BshTI ACCGGT 1 cut(s) 316
BshVI ATCGAT 1 cut(s) 834
BsiSI CCGG 1 cut(s) 317
BslFI GGGAC 2 cut(s) 962, 1125
BslI CCNNNNNNNGG 4 cut(s) 67, 331, 1045, 1048
BsmAI GTCTC 2 cut(s) 143, 1193
BsmFI GGGAC 2 cut(s) 962, 1125
BsnI GGCC 3 cut(s) 44, 324, 1418
Bsp119I TTCGAA 1 cut(s) 1059
Bsp143I GATC 8 cut(s) 56, 194, 387, 430, 479, 655, 831, 835
BspACI CCGC 2 cut(s) 1039, 1419
BspANI GGCC 3 cut(s) 44, 324, 1418
BspCNI CTCAG 7 cut(s) 55, 687, 820, 832, 1183, 1231, 1327
BspDI ATCGAT 1 cut(s) 834
BspHI TCATGA 2 cut(s) 1018, 1294
BspLI GGNNCC 5 cut(s) 325, 959, 1113, 1221, 1341
BspPI GGATC 4 cut(s) 51, 425, 487, 830
BspQI GCTCTTC 1 cut(s) 1281
BspT104I TTCGAA 1 cut(s) 1059
BspT107I GGYRCC 2 cut(s) 957, 1339
BsrDI GCAATG 1 cut(s) 571
BsrFI RCCGGY 1 cut(s) 316
BsrI ACTGG 2 cut(s) 697, 949
BssAI RCCGGY 1 cut(s) 316
BssECI CCNNGG 2 cut(s) 1302, 1409
BssMI GATC 8 cut(s) 56, 194, 387, 430, 479, 655, 831, 835
BssNAI GTATAC 3 cut(s) 494, 805, 936
BssNI GRCGYC 2 cut(s) 958, 1340
BssT1I CCWWGG 1 cut(s) 1409
Bst1107I GTATAC 3 cut(s) 494, 805, 936
Bst2UI CCWGG 1 cut(s) 972
Bst6I CTCTTC 6 cut(s) 66, 138, 276, 444, 1069, 1281
BstACI GRCGYC 2 cut(s) 958, 1340
BstAPI GCANNNNNTGC 1 cut(s) 98
BstBAI YACGTR 1 cut(s) 1229
BstBI TTCGAA 1 cut(s) 1059
BstDEI CTNAG 9 cut(s) 63, 483, 674, 828, 840, 1098, 1191, 1239, 1335
BstF5I GGATG 5 cut(s) 174, 250, 475, 1006, 1136
BstH2I RGCGCY 2 cut(s) 961, 1343
BstHHI GCGC 5 cut(s) 519, 664, 960, 1342, 1377
BstKTI GATC 8 cut(s) 59, 197, 390, 433, 482, 658, 834, 838
BstMAI GTCTC 2 cut(s) 143, 1193
BstMBI GATC 8 cut(s) 56, 194, 387, 430, 479, 655, 831, 835
BstMWI GCNNNNNNNGC 1 cut(s) 98
BstNI CCWGG 1 cut(s) 972
BstPAI GACNNNNGTC 1 cut(s) 1026
BstSCI CCNGG 1 cut(s) 970
BstV1I GCAGC 2 cut(s) 228, 613
BstV2I GAAGAC 1 cut(s) 1404
BstX2I RGATCY 2 cut(s) 56, 479
BstYI RGATCY 2 cut(s) 56, 479
BstZ17I GTATAC 3 cut(s) 494, 805, 936
Bsu15I ATCGAT 1 cut(s) 834
Bsu36I CCTNAGG 1 cut(s) 63
BsuI GTATCC 1 cut(s) 448
BsuRI GGCC 3 cut(s) 44, 324, 1418
BsuTUI ATCGAT 1 cut(s) 834
BtgZI GCGATG 2 cut(s) 73, 1412
BtsCI GGATG 5 cut(s) 174, 250, 475, 1006, 1136
CciI TCATGA 2 cut(s) 1018, 1294
CfoI GCGC 5 cut(s) 519, 664, 960, 1342, 1377
Cfr10I RCCGGY 1 cut(s) 316
Cfr13I GGNCC 3 cut(s) 76, 323, 1112
ClaI ATCGAT 1 cut(s) 834
CsiI ACCWGGT 1 cut(s) 970
CspAI ACCGGT 1 cut(s) 316
CviAII CATG 7 cut(s) 182, 385, 406, 653, 680, 1019, 1295
DdeI CTNAG 9 cut(s) 63, 483, 674, 828, 840, 1098, 1191, 1239, 1335
DinI GGCGCC 2 cut(s) 959, 1341
DpnI GATC 8 cut(s) 58, 196, 389, 432, 481, 657, 833, 837
DpnII GATC 8 cut(s) 56, 194, 387, 430, 479, 655, 831, 835
DraI TTTAAA 1 cut(s) 1092
Eam1104I CTCTTC 6 cut(s) 66, 138, 276, 444, 1069, 1281
EarI CTCTTC 6 cut(s) 66, 138, 276, 444, 1069, 1281
Eco130I CCWWGG 1 cut(s) 1409
Eco32I GATATC 1 cut(s) 1123
Eco47I GGWCC 2 cut(s) 76, 1112
Eco57I CTGAAG 1 cut(s) 737
Eco81I CCTNAGG 1 cut(s) 63
EcoO109I RGGNCCY 1 cut(s) 1112
EcoRII CCWGG 1 cut(s) 970
EcoRV GATATC 1 cut(s) 1123
EcoT14I CCWWGG 1 cut(s) 1409
EcoT22I ATGCAT 1 cut(s) 1318
EgeI GGCGCC 2 cut(s) 959, 1341
EheI GGCGCC 2 cut(s) 959, 1341
ErhI CCWWGG 1 cut(s) 1409
FaeI CATG 7 cut(s) 185, 388, 409, 656, 683, 1022, 1298
FalI AAGNNNNNCTT 4 cut(s) 975, 1007, 1124, 1156
FaqI GGGAC 2 cut(s) 962, 1125
FatI CATG 7 cut(s) 181, 384, 405, 652, 679, 1018, 1294
FauNDI CATATG 2 cut(s) 442, 1044
FbaI TGATCA 2 cut(s) 387, 655
FblI GTMKAC 3 cut(s) 493, 804, 935
Fnu4HI GCNGC 4 cut(s) 217, 602, 1039, 1419
FokI GGATG 5 cut(s) 161, 257, 482, 1013, 1123
Fsp4HI GCNGC 4 cut(s) 217, 602, 1039, 1419
FspBI CTAG 7 cut(s) 239, 267, 306, 338, 555, 626, 1410
GlaI GCGC 5 cut(s) 518, 663, 959, 1341, 1376
GluI GCNGC 4 cut(s) 217, 602, 1039, 1419
GsuI CTGGAG 2 cut(s) 541, 680
HaeII RGCGCY 2 cut(s) 961, 1343
HaeIII GGCC 3 cut(s) 44, 324, 1418
HapII CCGG 1 cut(s) 317
HhaI GCGC 5 cut(s) 519, 664, 960, 1342, 1377
Hin1I GRCGYC 2 cut(s) 958, 1340
Hin1II CATG 7 cut(s) 185, 388, 409, 656, 683, 1022, 1298
Hin6I GCGC 5 cut(s) 517, 662, 958, 1340, 1375
HinP1I GCGC 5 cut(s) 517, 662, 958, 1340, 1375
HpaII CCGG 1 cut(s) 317
HphI GGTGA 4 cut(s) 131, 189, 934, 960
Hpy166II GTNNAC 4 cut(s) 356, 494, 805, 936
Hpy8I GTNNAC 4 cut(s) 356, 494, 805, 936
Hpy99I CGWCG 1 cut(s) 1032
HpyAV CCTTC 4 cut(s) 206, 907, 913, 1408
HpyCH4IV ACGT 4 cut(s) 352, 496, 571, 1228
HpyCH4V TGCA 4 cut(s) 569, 601, 640, 1316
HpyF10VI GCNNNNNNNGC 1 cut(s) 98
HpyF3I CTNAG 9 cut(s) 63, 483, 674, 828, 840, 1098, 1191, 1239, 1335
HpySE526I ACGT 4 cut(s) 352, 496, 571, 1228
Hsp92I GRCGYC 2 cut(s) 958, 1340
Hsp92II CATG 7 cut(s) 185, 388, 409, 656, 683, 1022, 1298
HspAI GCGC 5 cut(s) 517, 662, 958, 1340, 1375
KasI GGCGCC 2 cut(s) 957, 1339
Ksp22I TGATCA 2 cut(s) 387, 655
Kzo9I GATC 8 cut(s) 56, 194, 387, 430, 479, 655, 831, 835
LguI GCTCTTC 1 cut(s) 1281
LmnI GCTCC 2 cut(s) 334, 1219
Lsp1109I GCAGC 2 cut(s) 228, 613
LweI GCATC 7 cut(s) 240, 253, 976, 1288, 1300, 1303, 1325
MabI ACCWGGT 1 cut(s) 970
MaeI CTAG 7 cut(s) 239, 267, 306, 338, 555, 626, 1410
MaeII ACGT 4 cut(s) 352, 496, 571, 1228
MaeIII GTNAC 5 cut(s) 119, 463, 699, 823, 1104
MalI GATC 8 cut(s) 58, 196, 389, 432, 481, 657, 833, 837
MboI GATC 8 cut(s) 56, 194, 387, 430, 479, 655, 831, 835
MflI RGATCY 2 cut(s) 56, 479
MluCI AATT 5 cut(s) 609, 754, 892, 1012, 1153
Mly113I GGCGCC 2 cut(s) 958, 1340
MlyI GAGTC 7 cut(s) 116, 238, 1016, 1196, 1355, 1394, 1397
Mph1103I ATGCAT 1 cut(s) 1318
MseI TTAA 6 cut(s) 36, 608, 903, 1091, 1308, 1356
MslI CAYNNNNRTG 1 cut(s) 1296
MspI CCGG 1 cut(s) 317
MspR9I CCNGG 1 cut(s) 972
MvaI CCWGG 1 cut(s) 972
MwoI GCNNNNNNNGC 1 cut(s) 98
NarI GGCGCC 2 cut(s) 958, 1340
NdeI CATATG 2 cut(s) 442, 1044
NdeII GATC 8 cut(s) 56, 194, 387, 430, 479, 655, 831, 835
NlaIII CATG 7 cut(s) 185, 388, 409, 656, 683, 1022, 1298
NlaIV GGNNCC 5 cut(s) 325, 959, 1113, 1221, 1341
NmeAIII GCCGAG 1 cut(s) 1327
NmuCI GTSAC 4 cut(s) 119, 463, 699, 1104
NsiI ATGCAT 1 cut(s) 1318
NspV TTCGAA 1 cut(s) 1059
PagI TCATGA 2 cut(s) 1018, 1294
PciSI GCTCTTC 1 cut(s) 1281
PfeI GAWTC 8 cut(s) 185, 275, 343, 473, 690, 785, 1244, 1265
PinAI ACCGGT 1 cut(s) 316
PkrI GCNGC 4 cut(s) 218, 603, 1040, 1420
PleI GAGTC 7 cut(s) 116, 237, 1016, 1195, 1355, 1394, 1396
PluTI GGCGCC 2 cut(s) 961, 1343
PpsI GAGTC 7 cut(s) 116, 237, 1016, 1195, 1355, 1394, 1396
Ppu21I YACGTR 1 cut(s) 1229
PpuMI RGGWCCY 1 cut(s) 1112
PshAI GACNNNNGTC 1 cut(s) 1026
PshBI ATTAAT 1 cut(s) 608
Psp5II RGGWCCY 1 cut(s) 1112
Psp6I CCWGG 1 cut(s) 970
PspGI CCWGG 1 cut(s) 970
PspN4I GGNNCC 5 cut(s) 325, 959, 1113, 1221, 1341
PspPI GGNCC 3 cut(s) 76, 323, 1112
PspPPI RGGWCCY 1 cut(s) 1112
PsuI RGATCY 2 cut(s) 56, 479
RseI CAYNNNNRTG 1 cut(s) 1296
SapI GCTCTTC 1 cut(s) 1281
SaqAI TTAA 6 cut(s) 36, 608, 903, 1091, 1308, 1356
SatI GCNGC 4 cut(s) 217, 602, 1039, 1419
Sau3AI GATC 8 cut(s) 56, 194, 387, 430, 479, 655, 831, 835
Sau96I GGNCC 3 cut(s) 76, 323, 1112
SchI GAGTC 7 cut(s) 116, 238, 1016, 1196, 1355, 1394, 1397
ScrFI CCNGG 1 cut(s) 972
SexAI ACCWGGT 1 cut(s) 970
SfaNI GCATC 7 cut(s) 240, 253, 976, 1288, 1300, 1303, 1325
SfoI GGCGCC 2 cut(s) 959, 1341
SfuI TTCGAA 1 cut(s) 1059
SinI GGWCC 2 cut(s) 76, 1112
SmiMI CAYNNNNRTG 1 cut(s) 1296
SpeI ACTAGT 1 cut(s) 554
Sse9I AATT 5 cut(s) 609, 754, 892, 1012, 1153
SsiI CCGC 2 cut(s) 1039, 1419
SspDI GGCGCC 2 cut(s) 957, 1339
SspI AATATT 1 cut(s) 292
SspMI CTAG 7 cut(s) 239, 267, 306, 338, 555, 626, 1410
StyD4I CCNGG 1 cut(s) 970
StyI CCWWGG 1 cut(s) 1409
TaiI ACGT 4 cut(s) 355, 499, 574, 1231
TaqI TCGA 5 cut(s) 790, 834, 1059, 1072, 1386
TasI AATT 5 cut(s) 609, 754, 892, 1012, 1153
TauI GCSGC 2 cut(s) 1041, 1421
TfiI GAWTC 8 cut(s) 185, 275, 343, 473, 690, 785, 1244, 1265
Tru1I TTAA 6 cut(s) 36, 608, 903, 1091, 1308, 1356
Tru9I TTAA 6 cut(s) 36, 608, 903, 1091, 1308, 1356
TseFI GTSAC 4 cut(s) 119, 463, 699, 1104
TseI GCWGC 2 cut(s) 216, 601
Tsp45I GTSAC 4 cut(s) 119, 463, 699, 1104
TspGWI ACGGA 1 cut(s) 482
VpaK11BI GGWCC 2 cut(s) 76, 1112
VspI ATTAAT 1 cut(s) 608
XapI RAATTY 1 cut(s) 754
XbaI TCTAGA 1 cut(s) 625
XcmI CCANNNNNNNNNTGG 1 cut(s) 968
XmaJI CCTAGG 1 cut(s) 1409
XmiI GTMKAC 3 cut(s) 493, 804, 935
XspI CTAG 7 cut(s) 239, 267, 306, 338, 555, 626, 1410
Zsp2I ATGCAT 1 cut(s) 1318
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.