RNA polymerase-associated protein
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| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT5G61150 AT5G61150 |
| fragaria_vesca | FvH4_5g14030 FvH4_5g14030 FvH4_5g14030 |
| malus_domestica | MD06G1201400.v1.1 MD14G1210500.v1.1 |
| prunus_persica | Prupe.5G203800_v2.0.a1 Prupe.5G203800_v2.0.a1 Prupe.5G203800_v2.0.a1 Prupe.5G203800_v2.0.a1 |
| pyrus_communis | pycom06g17740 pycom14g17380 |
| rosa_chinensis | RchiOBHm_Chr7g0182791 |
| rosa_laevigata | RLG00000005099 |
| rosa_multiflora | Rmu_sc0000014.1_g000027 |
| rosa_roxburghii | Rroxscaffold_3G00270970 |
| rosa_rugosa | Rorug06G0450800.1 Rorug06G0450900 |
| rosa_samantha | Rh7AG054100 Rh7BG053600 Rh7CG055200 Rh7DG053400 |
| rosa_wichuraiana | Rw7G004410 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccB1I | GGYRCC | 2 cut(s) | 957, 1339 |
| AccI | GTMKAC | 3 cut(s) | 493, 804, 935 |
| AciI | CCGC | 2 cut(s) | 1039, 1419 |
| AclWI | GGATC | 4 cut(s) | 51, 425, 487, 830 |
| AcsI | RAATTY | 1 cut(s) | 754 |
| AcuI | CTGAAG | 1 cut(s) | 737 |
| AcyI | GRCGYC | 2 cut(s) | 958, 1340 |
| AfiI | CCNNNNNNNGG | 4 cut(s) | 67, 331, 1045, 1048 |
| AgeI | ACCGGT | 1 cut(s) | 316 |
| AgsI | TTSAA | 4 cut(s) | 26, 54, 399, 1170 |
| AhlI | ACTAGT | 1 cut(s) | 554 |
| AjnI | CCWGG | 1 cut(s) | 970 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 1138, 1170 |
| AluBI | AGCT | 5 cut(s) | 219, 337, 604, 890, 1070 |
| AluI | AGCT | 5 cut(s) | 219, 337, 604, 890, 1070 |
| Alw26I | GTCTC | 2 cut(s) | 143, 1193 |
| AlwI | GGATC | 4 cut(s) | 51, 425, 487, 830 |
| AoxI | GGCC | 3 cut(s) | 42, 322, 1416 |
| ApeKI | GCWGC | 2 cut(s) | 216, 601 |
| ApoI | RAATTY | 1 cut(s) | 754 |
| AseI | ATTAAT | 1 cut(s) | 608 |
| AsiGI | ACCGGT | 1 cut(s) | 316 |
| AspA2I | CCTAGG | 1 cut(s) | 1409 |
| AspLEI | GCGC | 5 cut(s) | 519, 664, 960, 1342, 1377 |
| AspS9I | GGNCC | 3 cut(s) | 76, 323, 1112 |
| AsuHPI | GGTGA | 4 cut(s) | 131, 189, 934, 960 |
| AsuII | TTCGAA | 1 cut(s) | 1059 |
| AvaII | GGWCC | 2 cut(s) | 76, 1112 |
| AvrII | CCTAGG | 1 cut(s) | 1409 |
| AxyI | CCTNAGG | 1 cut(s) | 63 |
| BaeI | ACNNNNGTAYC | 2 cut(s) | 447, 480 |
| BanI | GGYRCC | 2 cut(s) | 957, 1339 |
| BbsI | GAAGAC | 1 cut(s) | 1404 |
| BbvCI | CCTCAGC | 2 cut(s) | 1239, 1335 |
| BbvI | GCAGC | 2 cut(s) | 228, 613 |
| BccI | CCATC | 6 cut(s) | 536, 576, 584, 745, 1199, 1228 |
| BceAI | ACGGC | 1 cut(s) | 146 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 1366, 1400 |
| BciT130I | CCWGG | 1 cut(s) | 972 |
| BciVI | GTATCC | 1 cut(s) | 448 |
| BclI | TGATCA | 2 cut(s) | 387, 655 |
| BcoDI | GTCTC | 2 cut(s) | 143, 1193 |
| BcuI | ACTAGT | 1 cut(s) | 554 |
| BfaI | CTAG | 7 cut(s) | 239, 267, 306, 338, 555, 626, 1410 |
| BfoI | RGCGCY | 2 cut(s) | 961, 1343 |
| BfuI | GTATCC | 1 cut(s) | 448 |
| BisI | GCNGC | 4 cut(s) | 217, 602, 1039, 1419 |
| BlnI | CCTAGG | 1 cut(s) | 1409 |
| BlsI | GCNGC | 4 cut(s) | 218, 603, 1040, 1420 |
| Bme1390I | CCNGG | 1 cut(s) | 972 |
| Bme18I | GGWCC | 2 cut(s) | 76, 1112 |
| BmgT120I | GGNCC | 3 cut(s) | 76, 323, 1112 |
| BmiI | GGNNCC | 5 cut(s) | 325, 959, 1113, 1221, 1341 |
| BmrFI | CCNGG | 1 cut(s) | 972 |
| BmrI | ACTGGG | 1 cut(s) | 954 |
| BmsI | GCATC | 7 cut(s) | 240, 253, 976, 1288, 1300, 1303, 1325 |
| BmuI | ACTGGG | 1 cut(s) | 954 |
| BoxI | GACNNNNGTC | 1 cut(s) | 1026 |
| BpiI | GAAGAC | 1 cut(s) | 1404 |
| BpmI | CTGGAG | 2 cut(s) | 541, 680 |
| Bpu10I | CCTNAGC | 2 cut(s) | 1239, 1335 |
| Bpu14I | TTCGAA | 1 cut(s) | 1059 |
| Bsa29I | ATCGAT | 1 cut(s) | 834 |
| BsaAI | YACGTR | 1 cut(s) | 1229 |
| BsaHI | GRCGYC | 2 cut(s) | 958, 1340 |
| BsaJI | CCNNGG | 2 cut(s) | 1302, 1409 |
| BsaWI | WCCGGW | 1 cut(s) | 316 |
| Bsc4I | CCNNNNNNNGG | 4 cut(s) | 67, 331, 1045, 1048 |
| Bse118I | RCCGGY | 1 cut(s) | 316 |
| Bse1I | ACTGG | 2 cut(s) | 697, 949 |
| Bse21I | CCTNAGG | 1 cut(s) | 63 |
| Bse3DI | GCAATG | 1 cut(s) | 571 |
| BseBI | CCWGG | 1 cut(s) | 972 |
| BseCI | ATCGAT | 1 cut(s) | 834 |
| BseDI | CCNNGG | 2 cut(s) | 1302, 1409 |
| BseGI | GGATG | 5 cut(s) | 174, 250, 475, 1006, 1136 |
| BseLI | CCNNNNNNNGG | 4 cut(s) | 67, 331, 1045, 1048 |
| BseMI | GCAATG | 1 cut(s) | 571 |
| BseMII | CTCAG | 7 cut(s) | 54, 688, 819, 831, 1182, 1230, 1326 |
| BseNI | ACTGG | 2 cut(s) | 697, 949 |
| BseRI | GAGGAG | 9 cut(s) | 80, 161, 221, 538, 869, 1064, 1232, 1337, 1395 |
| BseXI | GCAGC | 2 cut(s) | 228, 613 |
| BshFI | GGCC | 3 cut(s) | 44, 324, 1418 |
| BshNI | GGYRCC | 2 cut(s) | 957, 1339 |
| BshTI | ACCGGT | 1 cut(s) | 316 |
| BshVI | ATCGAT | 1 cut(s) | 834 |
| BsiSI | CCGG | 1 cut(s) | 317 |
| BslFI | GGGAC | 2 cut(s) | 962, 1125 |
| BslI | CCNNNNNNNGG | 4 cut(s) | 67, 331, 1045, 1048 |
| BsmAI | GTCTC | 2 cut(s) | 143, 1193 |
| BsmFI | GGGAC | 2 cut(s) | 962, 1125 |
| BsnI | GGCC | 3 cut(s) | 44, 324, 1418 |
| Bsp119I | TTCGAA | 1 cut(s) | 1059 |
| Bsp143I | GATC | 8 cut(s) | 56, 194, 387, 430, 479, 655, 831, 835 |
| BspACI | CCGC | 2 cut(s) | 1039, 1419 |
| BspANI | GGCC | 3 cut(s) | 44, 324, 1418 |
| BspCNI | CTCAG | 7 cut(s) | 55, 687, 820, 832, 1183, 1231, 1327 |
| BspDI | ATCGAT | 1 cut(s) | 834 |
| BspHI | TCATGA | 2 cut(s) | 1018, 1294 |
| BspLI | GGNNCC | 5 cut(s) | 325, 959, 1113, 1221, 1341 |
| BspPI | GGATC | 4 cut(s) | 51, 425, 487, 830 |
| BspQI | GCTCTTC | 1 cut(s) | 1281 |
| BspT104I | TTCGAA | 1 cut(s) | 1059 |
| BspT107I | GGYRCC | 2 cut(s) | 957, 1339 |
| BsrDI | GCAATG | 1 cut(s) | 571 |
| BsrFI | RCCGGY | 1 cut(s) | 316 |
| BsrI | ACTGG | 2 cut(s) | 697, 949 |
| BssAI | RCCGGY | 1 cut(s) | 316 |
| BssECI | CCNNGG | 2 cut(s) | 1302, 1409 |
| BssMI | GATC | 8 cut(s) | 56, 194, 387, 430, 479, 655, 831, 835 |
| BssNAI | GTATAC | 3 cut(s) | 494, 805, 936 |
| BssNI | GRCGYC | 2 cut(s) | 958, 1340 |
| BssT1I | CCWWGG | 1 cut(s) | 1409 |
| Bst1107I | GTATAC | 3 cut(s) | 494, 805, 936 |
| Bst2UI | CCWGG | 1 cut(s) | 972 |
| Bst6I | CTCTTC | 6 cut(s) | 66, 138, 276, 444, 1069, 1281 |
| BstACI | GRCGYC | 2 cut(s) | 958, 1340 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 98 |
| BstBAI | YACGTR | 1 cut(s) | 1229 |
| BstBI | TTCGAA | 1 cut(s) | 1059 |
| BstDEI | CTNAG | 9 cut(s) | 63, 483, 674, 828, 840, 1098, 1191, 1239, 1335 |
| BstF5I | GGATG | 5 cut(s) | 174, 250, 475, 1006, 1136 |
| BstH2I | RGCGCY | 2 cut(s) | 961, 1343 |
| BstHHI | GCGC | 5 cut(s) | 519, 664, 960, 1342, 1377 |
| BstKTI | GATC | 8 cut(s) | 59, 197, 390, 433, 482, 658, 834, 838 |
| BstMAI | GTCTC | 2 cut(s) | 143, 1193 |
| BstMBI | GATC | 8 cut(s) | 56, 194, 387, 430, 479, 655, 831, 835 |
| BstMWI | GCNNNNNNNGC | 1 cut(s) | 98 |
| BstNI | CCWGG | 1 cut(s) | 972 |
| BstPAI | GACNNNNGTC | 1 cut(s) | 1026 |
| BstSCI | CCNGG | 1 cut(s) | 970 |
| BstV1I | GCAGC | 2 cut(s) | 228, 613 |
| BstV2I | GAAGAC | 1 cut(s) | 1404 |
| BstX2I | RGATCY | 2 cut(s) | 56, 479 |
| BstYI | RGATCY | 2 cut(s) | 56, 479 |
| BstZ17I | GTATAC | 3 cut(s) | 494, 805, 936 |
| Bsu15I | ATCGAT | 1 cut(s) | 834 |
| Bsu36I | CCTNAGG | 1 cut(s) | 63 |
| BsuI | GTATCC | 1 cut(s) | 448 |
| BsuRI | GGCC | 3 cut(s) | 44, 324, 1418 |
| BsuTUI | ATCGAT | 1 cut(s) | 834 |
| BtgZI | GCGATG | 2 cut(s) | 73, 1412 |
| BtsCI | GGATG | 5 cut(s) | 174, 250, 475, 1006, 1136 |
| CciI | TCATGA | 2 cut(s) | 1018, 1294 |
| CfoI | GCGC | 5 cut(s) | 519, 664, 960, 1342, 1377 |
| Cfr10I | RCCGGY | 1 cut(s) | 316 |
| Cfr13I | GGNCC | 3 cut(s) | 76, 323, 1112 |
| ClaI | ATCGAT | 1 cut(s) | 834 |
| CsiI | ACCWGGT | 1 cut(s) | 970 |
| CspAI | ACCGGT | 1 cut(s) | 316 |
| CviAII | CATG | 7 cut(s) | 182, 385, 406, 653, 680, 1019, 1295 |
| DdeI | CTNAG | 9 cut(s) | 63, 483, 674, 828, 840, 1098, 1191, 1239, 1335 |
| DinI | GGCGCC | 2 cut(s) | 959, 1341 |
| DpnI | GATC | 8 cut(s) | 58, 196, 389, 432, 481, 657, 833, 837 |
| DpnII | GATC | 8 cut(s) | 56, 194, 387, 430, 479, 655, 831, 835 |
| DraI | TTTAAA | 1 cut(s) | 1092 |
| Eam1104I | CTCTTC | 6 cut(s) | 66, 138, 276, 444, 1069, 1281 |
| EarI | CTCTTC | 6 cut(s) | 66, 138, 276, 444, 1069, 1281 |
| Eco130I | CCWWGG | 1 cut(s) | 1409 |
| Eco32I | GATATC | 1 cut(s) | 1123 |
| Eco47I | GGWCC | 2 cut(s) | 76, 1112 |
| Eco57I | CTGAAG | 1 cut(s) | 737 |
| Eco81I | CCTNAGG | 1 cut(s) | 63 |
| EcoO109I | RGGNCCY | 1 cut(s) | 1112 |
| EcoRII | CCWGG | 1 cut(s) | 970 |
| EcoRV | GATATC | 1 cut(s) | 1123 |
| EcoT14I | CCWWGG | 1 cut(s) | 1409 |
| EcoT22I | ATGCAT | 1 cut(s) | 1318 |
| EgeI | GGCGCC | 2 cut(s) | 959, 1341 |
| EheI | GGCGCC | 2 cut(s) | 959, 1341 |
| ErhI | CCWWGG | 1 cut(s) | 1409 |
| FaeI | CATG | 7 cut(s) | 185, 388, 409, 656, 683, 1022, 1298 |
| FalI | AAGNNNNNCTT | 4 cut(s) | 975, 1007, 1124, 1156 |
| FaqI | GGGAC | 2 cut(s) | 962, 1125 |
| FatI | CATG | 7 cut(s) | 181, 384, 405, 652, 679, 1018, 1294 |
| FauNDI | CATATG | 2 cut(s) | 442, 1044 |
| FbaI | TGATCA | 2 cut(s) | 387, 655 |
| FblI | GTMKAC | 3 cut(s) | 493, 804, 935 |
| Fnu4HI | GCNGC | 4 cut(s) | 217, 602, 1039, 1419 |
| FokI | GGATG | 5 cut(s) | 161, 257, 482, 1013, 1123 |
| Fsp4HI | GCNGC | 4 cut(s) | 217, 602, 1039, 1419 |
| FspBI | CTAG | 7 cut(s) | 239, 267, 306, 338, 555, 626, 1410 |
| GlaI | GCGC | 5 cut(s) | 518, 663, 959, 1341, 1376 |
| GluI | GCNGC | 4 cut(s) | 217, 602, 1039, 1419 |
| GsuI | CTGGAG | 2 cut(s) | 541, 680 |
| HaeII | RGCGCY | 2 cut(s) | 961, 1343 |
| HaeIII | GGCC | 3 cut(s) | 44, 324, 1418 |
| HapII | CCGG | 1 cut(s) | 317 |
| HhaI | GCGC | 5 cut(s) | 519, 664, 960, 1342, 1377 |
| Hin1I | GRCGYC | 2 cut(s) | 958, 1340 |
| Hin1II | CATG | 7 cut(s) | 185, 388, 409, 656, 683, 1022, 1298 |
| Hin6I | GCGC | 5 cut(s) | 517, 662, 958, 1340, 1375 |
| HinP1I | GCGC | 5 cut(s) | 517, 662, 958, 1340, 1375 |
| HpaII | CCGG | 1 cut(s) | 317 |
| HphI | GGTGA | 4 cut(s) | 131, 189, 934, 960 |
| Hpy166II | GTNNAC | 4 cut(s) | 356, 494, 805, 936 |
| Hpy8I | GTNNAC | 4 cut(s) | 356, 494, 805, 936 |
| Hpy99I | CGWCG | 1 cut(s) | 1032 |
| HpyAV | CCTTC | 4 cut(s) | 206, 907, 913, 1408 |
| HpyCH4IV | ACGT | 4 cut(s) | 352, 496, 571, 1228 |
| HpyCH4V | TGCA | 4 cut(s) | 569, 601, 640, 1316 |
| HpyF10VI | GCNNNNNNNGC | 1 cut(s) | 98 |
| HpyF3I | CTNAG | 9 cut(s) | 63, 483, 674, 828, 840, 1098, 1191, 1239, 1335 |
| HpySE526I | ACGT | 4 cut(s) | 352, 496, 571, 1228 |
| Hsp92I | GRCGYC | 2 cut(s) | 958, 1340 |
| Hsp92II | CATG | 7 cut(s) | 185, 388, 409, 656, 683, 1022, 1298 |
| HspAI | GCGC | 5 cut(s) | 517, 662, 958, 1340, 1375 |
| KasI | GGCGCC | 2 cut(s) | 957, 1339 |
| Ksp22I | TGATCA | 2 cut(s) | 387, 655 |
| Kzo9I | GATC | 8 cut(s) | 56, 194, 387, 430, 479, 655, 831, 835 |
| LguI | GCTCTTC | 1 cut(s) | 1281 |
| LmnI | GCTCC | 2 cut(s) | 334, 1219 |
| Lsp1109I | GCAGC | 2 cut(s) | 228, 613 |
| LweI | GCATC | 7 cut(s) | 240, 253, 976, 1288, 1300, 1303, 1325 |
| MabI | ACCWGGT | 1 cut(s) | 970 |
| MaeI | CTAG | 7 cut(s) | 239, 267, 306, 338, 555, 626, 1410 |
| MaeII | ACGT | 4 cut(s) | 352, 496, 571, 1228 |
| MaeIII | GTNAC | 5 cut(s) | 119, 463, 699, 823, 1104 |
| MalI | GATC | 8 cut(s) | 58, 196, 389, 432, 481, 657, 833, 837 |
| MboI | GATC | 8 cut(s) | 56, 194, 387, 430, 479, 655, 831, 835 |
| MflI | RGATCY | 2 cut(s) | 56, 479 |
| MluCI | AATT | 5 cut(s) | 609, 754, 892, 1012, 1153 |
| Mly113I | GGCGCC | 2 cut(s) | 958, 1340 |
| MlyI | GAGTC | 7 cut(s) | 116, 238, 1016, 1196, 1355, 1394, 1397 |
| Mph1103I | ATGCAT | 1 cut(s) | 1318 |
| MseI | TTAA | 6 cut(s) | 36, 608, 903, 1091, 1308, 1356 |
| MslI | CAYNNNNRTG | 1 cut(s) | 1296 |
| MspI | CCGG | 1 cut(s) | 317 |
| MspR9I | CCNGG | 1 cut(s) | 972 |
| MvaI | CCWGG | 1 cut(s) | 972 |
| MwoI | GCNNNNNNNGC | 1 cut(s) | 98 |
| NarI | GGCGCC | 2 cut(s) | 958, 1340 |
| NdeI | CATATG | 2 cut(s) | 442, 1044 |
| NdeII | GATC | 8 cut(s) | 56, 194, 387, 430, 479, 655, 831, 835 |
| NlaIII | CATG | 7 cut(s) | 185, 388, 409, 656, 683, 1022, 1298 |
| NlaIV | GGNNCC | 5 cut(s) | 325, 959, 1113, 1221, 1341 |
| NmeAIII | GCCGAG | 1 cut(s) | 1327 |
| NmuCI | GTSAC | 4 cut(s) | 119, 463, 699, 1104 |
| NsiI | ATGCAT | 1 cut(s) | 1318 |
| NspV | TTCGAA | 1 cut(s) | 1059 |
| PagI | TCATGA | 2 cut(s) | 1018, 1294 |
| PciSI | GCTCTTC | 1 cut(s) | 1281 |
| PfeI | GAWTC | 8 cut(s) | 185, 275, 343, 473, 690, 785, 1244, 1265 |
| PinAI | ACCGGT | 1 cut(s) | 316 |
| PkrI | GCNGC | 4 cut(s) | 218, 603, 1040, 1420 |
| PleI | GAGTC | 7 cut(s) | 116, 237, 1016, 1195, 1355, 1394, 1396 |
| PluTI | GGCGCC | 2 cut(s) | 961, 1343 |
| PpsI | GAGTC | 7 cut(s) | 116, 237, 1016, 1195, 1355, 1394, 1396 |
| Ppu21I | YACGTR | 1 cut(s) | 1229 |
| PpuMI | RGGWCCY | 1 cut(s) | 1112 |
| PshAI | GACNNNNGTC | 1 cut(s) | 1026 |
| PshBI | ATTAAT | 1 cut(s) | 608 |
| Psp5II | RGGWCCY | 1 cut(s) | 1112 |
| Psp6I | CCWGG | 1 cut(s) | 970 |
| PspGI | CCWGG | 1 cut(s) | 970 |
| PspN4I | GGNNCC | 5 cut(s) | 325, 959, 1113, 1221, 1341 |
| PspPI | GGNCC | 3 cut(s) | 76, 323, 1112 |
| PspPPI | RGGWCCY | 1 cut(s) | 1112 |
| PsuI | RGATCY | 2 cut(s) | 56, 479 |
| RseI | CAYNNNNRTG | 1 cut(s) | 1296 |
| SapI | GCTCTTC | 1 cut(s) | 1281 |
| SaqAI | TTAA | 6 cut(s) | 36, 608, 903, 1091, 1308, 1356 |
| SatI | GCNGC | 4 cut(s) | 217, 602, 1039, 1419 |
| Sau3AI | GATC | 8 cut(s) | 56, 194, 387, 430, 479, 655, 831, 835 |
| Sau96I | GGNCC | 3 cut(s) | 76, 323, 1112 |
| SchI | GAGTC | 7 cut(s) | 116, 238, 1016, 1196, 1355, 1394, 1397 |
| ScrFI | CCNGG | 1 cut(s) | 972 |
| SexAI | ACCWGGT | 1 cut(s) | 970 |
| SfaNI | GCATC | 7 cut(s) | 240, 253, 976, 1288, 1300, 1303, 1325 |
| SfoI | GGCGCC | 2 cut(s) | 959, 1341 |
| SfuI | TTCGAA | 1 cut(s) | 1059 |
| SinI | GGWCC | 2 cut(s) | 76, 1112 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 1296 |
| SpeI | ACTAGT | 1 cut(s) | 554 |
| Sse9I | AATT | 5 cut(s) | 609, 754, 892, 1012, 1153 |
| SsiI | CCGC | 2 cut(s) | 1039, 1419 |
| SspDI | GGCGCC | 2 cut(s) | 957, 1339 |
| SspI | AATATT | 1 cut(s) | 292 |
| SspMI | CTAG | 7 cut(s) | 239, 267, 306, 338, 555, 626, 1410 |
| StyD4I | CCNGG | 1 cut(s) | 970 |
| StyI | CCWWGG | 1 cut(s) | 1409 |
| TaiI | ACGT | 4 cut(s) | 355, 499, 574, 1231 |
| TaqI | TCGA | 5 cut(s) | 790, 834, 1059, 1072, 1386 |
| TasI | AATT | 5 cut(s) | 609, 754, 892, 1012, 1153 |
| TauI | GCSGC | 2 cut(s) | 1041, 1421 |
| TfiI | GAWTC | 8 cut(s) | 185, 275, 343, 473, 690, 785, 1244, 1265 |
| Tru1I | TTAA | 6 cut(s) | 36, 608, 903, 1091, 1308, 1356 |
| Tru9I | TTAA | 6 cut(s) | 36, 608, 903, 1091, 1308, 1356 |
| TseFI | GTSAC | 4 cut(s) | 119, 463, 699, 1104 |
| TseI | GCWGC | 2 cut(s) | 216, 601 |
| Tsp45I | GTSAC | 4 cut(s) | 119, 463, 699, 1104 |
| TspGWI | ACGGA | 1 cut(s) | 482 |
| VpaK11BI | GGWCC | 2 cut(s) | 76, 1112 |
| VspI | ATTAAT | 1 cut(s) | 608 |
| XapI | RAATTY | 1 cut(s) | 754 |
| XbaI | TCTAGA | 1 cut(s) | 625 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 968 |
| XmaJI | CCTAGG | 1 cut(s) | 1409 |
| XmiI | GTMKAC | 3 cut(s) | 493, 804, 935 |
| XspI | CTAG | 7 cut(s) | 239, 267, 306, 338, 555, 626, 1410 |
| Zsp2I | ATGCAT | 1 cut(s) | 1318 |