Rh7BG053600

RNA polymerase-associated protein

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7B
Physical Location & Seq
Forward (+)
3474525 .. 3482088
7564 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7BG053600.1

Sequence Viewer

Length: 1308 bp
ATGAGGTTTTTGCTGCATCAGAGATCCCCTATGGAAGAGGAAGGGAGCTATGACAAGAGTCCAAGAATAGAGGATGAAATGCAGGATGAAGAACCTAGATATGAGTCAGAAGAGGAAAATATGGAGGTTAAACCTAGAGAGAGACCTGTTGGCCCCCCATTGGAGCTAGAGATTCCATTGCGTCCACCTCCTGCTCATCCCGAAAAGATGAACATGATCAAAGTTTCAAATATCATGGGCATTGACCGCAAACAGTTTGATCCAAAGACATATGTGGAGGAGGACACGTTTGTGACAGATGAATCTGGATCTAAGAAACGTATACGTTTGGAAAACAATATTGTGCGCTGGAGGAAAGTTAGAACTTCTGACGGCAGATTATCTTGTGAGAGTAATGCACGCTTTGTGAGATGGTCTGATGGCAGTTTGCAATTATTAATTGGAAATGAAGTTTTAGATATATCAGTGCAAGAGGCACAACATGATCAAGCACACCTATTTCTCAGGCATGAAAAGGGAATCCTCCAATCACAAGGAAAGGTTATGAAGAAGATGAGGTTTATGCCGTCTTCCTTGGCCTCAAATTCTCATAGACTATTGACTGCTCTGGTTGATTCTCGACATAAAAAAGTGTACAAGGTTAAGAACTGTGTTACTGACATCGATCCTGAGAGAGAAAAGGAGGAGAAAGAAAGGGCTGAAAGTCAAACAATCAGAGCTAATTTACTTCTTAACCGGAAGAGGGAGAAGGTGAATCGAAAATATACACCCACTGTTGACAGGAGGCGCCAACTTTCACCTGGTTTCTTGGAGGAGGCTCTAGATGAGGATGATGAAGAAGATTATCATGAGTCTCGTCGTTCACGCCGCCATATTGAGGAGGAAGAAGCTCGAGCAGAGAAACGCATTATGAATGCTAAGAAGGCACAGAGACCTAAAGAATTCCCTCGCAAGTCATCCTTTCCAACTGGTAGATCTGCTCGGCAACAGCTGGATCTATCTGATAGTGAGAGAGGTGAGTCTGAATATGAAACCGATGGGGAAGAAGATGAGAGGTCTCCTCCACGTAAGAGGGCCATAGATCCAGAGCCGGAATATGAAGACGAGGAAGAAGATGATTATGAAGAAGAGGCAGAAGTAAATGAGGCATCAGAGGAGGAGGCTGAGGTATGGTTCTTTTCTTTTGAATTAAAGTACTTTTCTTATTATATAAATATGAGCATACGGATCTGTTATATCAGTACCATAAGATACAGATCTAGAAGGTGTTTCTGGGTGTTTGTTATCTCAAGTTATATGGCAACTTGA

Protein Analysis

435

Amino Acids

51.68

Weight (kDa)

5.35

Isoelectric Point (pI)

76.49

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Leo1 PF04004 72 - 231 3.8e-47 Leo1-like protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 786
AccI GTMKAC 1 cut(s) 322
AciI CCGC 2 cut(s) 247, 868
AclWI GGATC 7 cut(s) 18, 254, 316, 659, 1002, 1076, 1235
AcsI RAATTY 2 cut(s) 583, 941
AcyI GRCGYC 1 cut(s) 787
AfaI GTAC 3 cut(s) 635, 1196, 1243
AfiI CCNNNNNNNGG 3 cut(s) 160, 742, 877
AflIII ACRYGT 1 cut(s) 285
AgsI TTSAA 2 cut(s) 228, 1187
AjnI CCWGG 1 cut(s) 799
AleI CACNNNNGTG 1 cut(s) 290
AluBI AGCT 5 cut(s) 48, 166, 719, 890, 991
AluI AGCT 5 cut(s) 48, 166, 719, 890, 991
Alw26I GTCTC 4 cut(s) 136, 858, 925, 1062
AlwI GGATC 7 cut(s) 18, 254, 316, 659, 1002, 1076, 1235
Ama87I CYCGRG 1 cut(s) 891
AoxI GGCC 3 cut(s) 151, 576, 1074
ApeKI GCWGC 1 cut(s) 13
ApoI RAATTY 2 cut(s) 583, 941
AseI ATTAAT 1 cut(s) 437
AspLEI GCGC 2 cut(s) 348, 789
AspS9I GGNCC 2 cut(s) 152, 1074
AsuHPI GGTGA 3 cut(s) 763, 789, 1028
AvaI CYCGRG 1 cut(s) 891
BanI GGYRCC 1 cut(s) 786
BbsI GAAGAC 2 cut(s) 561, 1107
BbvCI CCTCAGC 1 cut(s) 1164
BccI CCATC 3 cut(s) 405, 413, 1031
BceAI ACGGC 2 cut(s) 388, 550
BciT130I CCWGG 1 cut(s) 801
BclI TGATCA 2 cut(s) 216, 484
BcoDI GTCTC 4 cut(s) 136, 858, 925, 1062
BfaI CTAG 5 cut(s) 96, 135, 167, 821, 1260
BfoI RGCGCY 1 cut(s) 790
BglII AGATCT 2 cut(s) 974, 1256
BisI GCNGC 2 cut(s) 14, 868
BlsI GCNGC 2 cut(s) 15, 869
BmcAI AGTACT 1 cut(s) 1196
Bme1390I CCNGG 1 cut(s) 801
BmeT110I CYCGRG 1 cut(s) 891
BmgT120I GGNCC 2 cut(s) 152, 1074
BmiI GGNNCC 2 cut(s) 154, 788
BmrFI CCNGG 1 cut(s) 801
BmsI GCATC 2 cut(s) 25, 1157
BoxI GACNNNNGTC 1 cut(s) 57
BpiI GAAGAC 2 cut(s) 561, 1107
BplI GAGNNNNNCTC 2 cut(s) 1045, 1077
BpmI CTGGAG 1 cut(s) 370
Bpu10I CCTNAGC 1 cut(s) 1164
BpuEI CTTGAG 1 cut(s) 1273
Bsa29I ATCGAT 1 cut(s) 663
BsaAI YACGTR 1 cut(s) 1067
BsaBI GATNNNNATC 1 cut(s) 1255
BsaHI GRCGYC 1 cut(s) 787
BsaI GGTCTC 3 cut(s) 136, 925, 1062
BsaJI CCNNGG 1 cut(s) 573
BsaWI WCCGGW 1 cut(s) 735
BsaXI ACNNNNNCTCC 2 cut(s) 272, 302
Bsc4I CCNNNNNNNGG 3 cut(s) 160, 742, 877
Bse1I ACTGG 1 cut(s) 973
Bse3DI GCAATG 1 cut(s) 176
Bse8I GATNNNNATC 1 cut(s) 1255
BseBI CCWGG 1 cut(s) 801
BseCI ATCGAT 1 cut(s) 663
BseDI CCNNGG 1 cut(s) 573
BseGI GGATG 5 cut(s) 79, 91, 196, 835, 956
BseJI GATNNNNATC 1 cut(s) 1255
BseLI CCNNNNNNNGG 3 cut(s) 160, 742, 877
BseMI GCAATG 1 cut(s) 176
BseMII CTCAG 3 cut(s) 517, 660, 1155
BseNI ACTGG 1 cut(s) 973
BseRI GAGGAG 7 cut(s) 293, 698, 827, 893, 1050, 1169, 1172
BshFI GGCC 3 cut(s) 153, 578, 1076
BshNI GGYRCC 1 cut(s) 786
BshVI ATCGAT 1 cut(s) 663
BsiHKCI CYCGRG 1 cut(s) 891
BsiSI CCGG 2 cut(s) 736, 1091
BslI CCNNNNNNNGG 3 cut(s) 160, 742, 877
BsmAI GTCTC 4 cut(s) 136, 858, 925, 1062
BsmI GAATGC 1 cut(s) 919
BsnI GGCC 3 cut(s) 153, 578, 1076
Bso31I GGTCTC 3 cut(s) 136, 925, 1062
BsoBI CYCGRG 1 cut(s) 891
Bsp1407I TGTACA 1 cut(s) 633
BspACI CCGC 2 cut(s) 247, 868
BspANI GGCC 3 cut(s) 153, 578, 1076
BspCNI CTCAG 3 cut(s) 516, 661, 1156
BspDI ATCGAT 1 cut(s) 663
BspHI TCATGA 1 cut(s) 847
BspLI GGNNCC 2 cut(s) 154, 788
BspPI GGATC 7 cut(s) 18, 254, 316, 659, 1002, 1076, 1235
BspT107I GGYRCC 1 cut(s) 786
BspTNI GGTCTC 3 cut(s) 136, 925, 1062
BsrDI GCAATG 1 cut(s) 176
BsrGI TGTACA 1 cut(s) 633
BsrI ACTGG 1 cut(s) 973
BssECI CCNNGG 1 cut(s) 573
BssNAI GTATAC 1 cut(s) 323
BssNI GRCGYC 1 cut(s) 787
BssT1I CCWWGG 1 cut(s) 573
Bst1107I GTATAC 1 cut(s) 323
Bst2UI CCWGG 1 cut(s) 801
Bst4CI ACNGT 3 cut(s) 255, 650, 775
Bst6I CTCTTC 4 cut(s) 30, 105, 734, 1122
BstACI GRCGYC 1 cut(s) 787
BstAUI TGTACA 1 cut(s) 633
BstBAI YACGTR 1 cut(s) 1067
BstC8I GCNNGC 1 cut(s) 400
BstDEI CTNAG 5 cut(s) 312, 503, 669, 918, 1164
BstF5I GGATG 5 cut(s) 79, 91, 196, 835, 956
BstH2I RGCGCY 1 cut(s) 790
BstHHI GCGC 2 cut(s) 348, 789
BstMAI GTCTC 4 cut(s) 136, 858, 925, 1062
BstMWI GCNNNNNNNGC 2 cut(s) 246, 923
BstNI CCWGG 1 cut(s) 801
BstPAI GACNNNNGTC 1 cut(s) 57
BstSCI CCNGG 1 cut(s) 799
BstV2I GAAGAC 2 cut(s) 561, 1107
BstX2I RGATCY 7 cut(s) 23, 308, 974, 994, 1081, 1227, 1256
BstYI RGATCY 7 cut(s) 23, 308, 974, 994, 1081, 1227, 1256
BstZ17I GTATAC 1 cut(s) 323
Bsu15I ATCGAT 1 cut(s) 663
BsuRI GGCC 3 cut(s) 153, 578, 1076
BsuTUI ATCGAT 1 cut(s) 663
BtsCI GGATG 5 cut(s) 79, 91, 196, 835, 956
BtsIMutI CAGTG 2 cut(s) 471, 771
Cac8I GCNNGC 1 cut(s) 400
CciI TCATGA 1 cut(s) 847
CfoI GCGC 2 cut(s) 348, 789
Cfr13I GGNCC 2 cut(s) 152, 1074
ClaI ATCGAT 1 cut(s) 663
CseI GACGC 1 cut(s) 170
CsiI ACCWGGT 1 cut(s) 799
Csp6I GTAC 3 cut(s) 634, 1195, 1242
CviAII CATG 5 cut(s) 214, 235, 482, 509, 848
CviQI GTAC 3 cut(s) 634, 1195, 1242
DdeI CTNAG 5 cut(s) 312, 503, 669, 918, 1164
DinI GGCGCC 1 cut(s) 788
Eam1104I CTCTTC 4 cut(s) 30, 105, 734, 1122
EarI CTCTTC 4 cut(s) 30, 105, 734, 1122
Eco130I CCWWGG 1 cut(s) 573
Eco31I GGTCTC 3 cut(s) 136, 925, 1062
Eco88I CYCGRG 1 cut(s) 891
EcoRI GAATTC 1 cut(s) 941
EcoRII CCWGG 1 cut(s) 799
EcoT14I CCWWGG 1 cut(s) 573
EgeI GGCGCC 1 cut(s) 788
EheI GGCGCC 1 cut(s) 788
ErhI CCWWGG 1 cut(s) 573
FaeI CATG 5 cut(s) 217, 238, 485, 512, 851
FalI AAGNNNNNCTT 2 cut(s) 944, 976
FatI CATG 5 cut(s) 213, 234, 481, 508, 847
FauNDI CATATG 1 cut(s) 271
FbaI TGATCA 2 cut(s) 216, 484
FblI GTMKAC 1 cut(s) 322
Fnu4HI GCNGC 2 cut(s) 14, 868
FokI GGATG 5 cut(s) 86, 98, 183, 842, 943
Fsp4HI GCNGC 2 cut(s) 14, 868
FspBI CTAG 5 cut(s) 96, 135, 167, 821, 1260
GlaI GCGC 2 cut(s) 347, 788
GluI GCNGC 2 cut(s) 14, 868
GsuI CTGGAG 1 cut(s) 370
HaeII RGCGCY 1 cut(s) 790
HaeIII GGCC 3 cut(s) 153, 578, 1076
HapII CCGG 2 cut(s) 736, 1091
HgaI GACGC 1 cut(s) 170
HhaI GCGC 2 cut(s) 348, 789
Hin1I GRCGYC 1 cut(s) 787
Hin1II CATG 5 cut(s) 217, 238, 485, 512, 851
Hin6I GCGC 2 cut(s) 346, 787
HinP1I GCGC 2 cut(s) 346, 787
HincII GTYRAC 1 cut(s) 778
HindII GTYRAC 1 cut(s) 778
HinfI GANTC 9 cut(s) 58, 104, 172, 302, 519, 614, 754, 851, 1019
HpaII CCGG 2 cut(s) 736, 1091
HphI GGTGA 3 cut(s) 763, 789, 1028
Hpy166II GTNNAC 5 cut(s) 185, 323, 634, 778, 863
Hpy188I TCNGA 8 cut(s) 21, 109, 370, 418, 716, 1003, 1024, 1153
Hpy188III TCNNGA 8 cut(s) 200, 306, 618, 668, 821, 848, 1085, 1260
Hpy8I GTNNAC 5 cut(s) 185, 323, 634, 778, 863
Hpy99I CGWCG 1 cut(s) 861
HpyAV CCTTC 4 cut(s) 35, 742, 916, 1257
HpyCH4III ACNGT 3 cut(s) 255, 650, 775
HpyCH4IV ACGT 4 cut(s) 287, 319, 325, 1066
HpyCH4V TGCA 5 cut(s) 16, 82, 398, 430, 469
HpyF10VI GCNNNNNNNGC 2 cut(s) 246, 923
HpyF3I CTNAG 5 cut(s) 312, 503, 669, 918, 1164
HpySE526I ACGT 4 cut(s) 287, 319, 325, 1066
Hsp92I GRCGYC 1 cut(s) 787
Hsp92II CATG 5 cut(s) 217, 238, 485, 512, 851
HspAI GCGC 2 cut(s) 346, 787
KasI GGCGCC 1 cut(s) 786
Ksp22I TGATCA 2 cut(s) 216, 484
LmnI GCTCC 2 cut(s) 45, 163
LweI GCATC 2 cut(s) 25, 1157
MabI ACCWGGT 1 cut(s) 799
MaeI CTAG 5 cut(s) 96, 135, 167, 821, 1260
MaeII ACGT 4 cut(s) 287, 319, 325, 1066
MaeIII GTNAC 2 cut(s) 292, 652
MflI RGATCY 7 cut(s) 23, 308, 974, 994, 1081, 1227, 1256
MluCI AATT 6 cut(s) 431, 438, 583, 721, 941, 1187
Mly113I GGCGCC 1 cut(s) 787
MlyI GAGTC 4 cut(s) 67, 113, 860, 1028
MmeI TCCRAC 1 cut(s) 989
MseI TTAA 5 cut(s) 129, 437, 642, 732, 1190
MslI CAYNNNNRTG 1 cut(s) 290
MspA1I CMGCKG 1 cut(s) 991
MspI CCGG 2 cut(s) 736, 1091
MspR9I CCNGG 1 cut(s) 801
Mva1269I GAATGC 1 cut(s) 919
MvaI CCWGG 1 cut(s) 801
MwoI GCNNNNNNNGC 2 cut(s) 246, 923
NarI GGCGCC 1 cut(s) 787
NdeI CATATG 1 cut(s) 271
NlaIII CATG 5 cut(s) 217, 238, 485, 512, 851
NlaIV GGNNCC 2 cut(s) 154, 788
NmeAIII GCCGAG 1 cut(s) 961
NmuCI GTSAC 1 cut(s) 292
OliI CACNNNNGTG 1 cut(s) 290
PaeR7I CTCGAG 1 cut(s) 891
PagI TCATGA 1 cut(s) 847
PctI GAATGC 1 cut(s) 919
PfeI GAWTC 5 cut(s) 172, 302, 519, 614, 754
PkrI GCNGC 2 cut(s) 15, 869
PleI GAGTC 4 cut(s) 66, 112, 859, 1027
PluTI GGCGCC 1 cut(s) 790
PpsI GAGTC 4 cut(s) 66, 112, 859, 1027
Ppu21I YACGTR 1 cut(s) 1067
PshAI GACNNNNGTC 1 cut(s) 57
PshBI ATTAAT 1 cut(s) 437
Psp6I CCWGG 1 cut(s) 799
PspGI CCWGG 1 cut(s) 799
PspN4I GGNNCC 2 cut(s) 154, 788
PspPI GGNCC 2 cut(s) 152, 1074
PspXI VCTCGAGB 1 cut(s) 891
PsuI RGATCY 7 cut(s) 23, 308, 974, 994, 1081, 1227, 1256
PvuII CAGCTG 1 cut(s) 991
RsaI GTAC 3 cut(s) 635, 1196, 1243
RsaNI GTAC 3 cut(s) 634, 1195, 1242
RseI CAYNNNNRTG 1 cut(s) 290
SaqAI TTAA 5 cut(s) 129, 437, 642, 732, 1190
SatI GCNGC 2 cut(s) 14, 868
Sau96I GGNCC 2 cut(s) 152, 1074
ScaI AGTACT 1 cut(s) 1196
SchI GAGTC 4 cut(s) 67, 113, 860, 1028
ScrFI CCNGG 1 cut(s) 801
SexAI ACCWGGT 1 cut(s) 799
SfaNI GCATC 2 cut(s) 25, 1157
SfoI GGCGCC 1 cut(s) 788
Sfr274I CTCGAG 1 cut(s) 891
SlaI CTCGAG 1 cut(s) 891
SmiMI CAYNNNNRTG 1 cut(s) 290
SmlI CTYRAG 2 cut(s) 891, 1288
SmoI CTYRAG 2 cut(s) 891, 1288
Sse9I AATT 6 cut(s) 431, 438, 583, 721, 941, 1187
SsiI CCGC 2 cut(s) 247, 868
SspDI GGCGCC 1 cut(s) 786
SspI AATATT 1 cut(s) 340
SspMI CTAG 5 cut(s) 96, 135, 167, 821, 1260
StyD4I CCNGG 1 cut(s) 799
StyI CCWWGG 1 cut(s) 573
TaaI ACNGT 3 cut(s) 255, 650, 775
TaiI ACGT 4 cut(s) 290, 322, 328, 1069
TaqI TCGA 4 cut(s) 619, 663, 757, 892
TasI AATT 6 cut(s) 431, 438, 583, 721, 941, 1187
TatI WGTACW 2 cut(s) 633, 1194
TauI GCSGC 1 cut(s) 870
TfiI GAWTC 5 cut(s) 172, 302, 519, 614, 754
Tru1I TTAA 5 cut(s) 129, 437, 642, 732, 1190
Tru9I TTAA 5 cut(s) 129, 437, 642, 732, 1190
TscAI CASTG 2 cut(s) 471, 778
TseFI GTSAC 1 cut(s) 292
TseI GCWGC 1 cut(s) 13
Tsp45I GTSAC 1 cut(s) 292
TspGWI ACGGA 1 cut(s) 1240
TspRI CASTG 2 cut(s) 471, 778
VspI ATTAAT 1 cut(s) 437
XapI RAATTY 2 cut(s) 583, 941
XbaI TCTAGA 2 cut(s) 820, 1259
XcmI CCANNNNNNNNNTGG 1 cut(s) 797
XhoI CTCGAG 1 cut(s) 891
XmiI GTMKAC 1 cut(s) 322
XspI CTAG 5 cut(s) 96, 135, 167, 821, 1260
ZrmI AGTACT 1 cut(s) 1196
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.