MD14G1241300.v1.1

Pentatricopeptide repeat-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr14
OG0019273
Physical Location & Seq
Forward (+)
31996153 .. 31996449
297 bp
Loading structure...
UTR
Exon/CDS
Intron
MD14G1241300.v1.1.491

Sequence Viewer

Length: 297 bp
ATGCCAATTAATGCCAGACGTCGAAAAGACGTGGCCAGAATCCGATTGTTAATGAGAAATACTGGCACCAAGGAAAGGCCTGGTTGTAGTTGGGTGCAAGGAAAGAAAGGCAACTCAACGCTCTTTGTGGGCGGCATGACTCATCGAATGTCTCAAGAAGGAGGCAGATTTTCTGCCCCTCCCACTTTCCGTACCCCCCCCTGTGCCCTTCTGTTTGTATTGTCACGGTTAAGCCACATCAACATTTTATATTACTATTCATTTTTGTCTTATTATCTCTATAAAAAAAATATATAA

Protein Analysis

99

Amino Acids

11.33

Weight (kDa)

10.8

Isoelectric Point (pI)

59.78

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
E_motif PF20431 4 - 33 2.5e-09 E motif
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 22
AccB1I GGYRCC 1 cut(s) 65
AciI CCGC 1 cut(s) 132
AcoI YGGCCR 1 cut(s) 33
AcyI GRCGYC 1 cut(s) 19
AfaI GTAC 1 cut(s) 193
AfiI CCNNNNNNNGG 1 cut(s) 75
AjiI CACGTC 1 cut(s) 31
AjnI CCWGG 1 cut(s) 79
Alw26I GTCTC 1 cut(s) 156
AoxI GGCC 2 cut(s) 33, 77
AseI ATTAAT 1 cut(s) 9
BaeGI GKGCMC 1 cut(s) 208
BalI TGGCCA 1 cut(s) 35
BanI GGYRCC 1 cut(s) 65
BciT130I CCWGG 1 cut(s) 81
BcoDI GTCTC 1 cut(s) 156
BisI GCNGC 1 cut(s) 133
BlsI GCNGC 1 cut(s) 134
Bme1390I CCNGG 1 cut(s) 81
BmgBI CACGTC 1 cut(s) 31
BmiI GGNNCC 1 cut(s) 67
BmrFI CCNGG 1 cut(s) 81
BpuEI CTTGAG 1 cut(s) 138
BsaHI GRCGYC 1 cut(s) 19
BsaJI CCNNGG 1 cut(s) 69
Bsc4I CCNNNNNNNGG 1 cut(s) 75
Bse1I ACTGG 1 cut(s) 67
BseBI CCWGG 1 cut(s) 81
BseDI CCNNGG 1 cut(s) 69
BseLI CCNNNNNNNGG 1 cut(s) 75
BseNI ACTGG 1 cut(s) 67
BseSI GKGCMC 1 cut(s) 208
BshFI GGCC 2 cut(s) 35, 79
BshNI GGYRCC 1 cut(s) 65
BslI CCNNNNNNNGG 1 cut(s) 75
BsmAI GTCTC 1 cut(s) 156
BsnI GGCC 2 cut(s) 35, 79
Bsp1286I GDGCHC 1 cut(s) 208
BspACI CCGC 1 cut(s) 132
BspANI GGCC 2 cut(s) 35, 79
BspLI GGNNCC 1 cut(s) 67
BspT107I GGYRCC 1 cut(s) 65
BsrI ACTGG 1 cut(s) 67
BssECI CCNNGG 1 cut(s) 69
BssNI GRCGYC 1 cut(s) 19
BssT1I CCWWGG 1 cut(s) 69
Bst2UI CCWGG 1 cut(s) 81
Bst4CI ACNGT 1 cut(s) 228
BstACI GRCGYC 1 cut(s) 19
BstMAI GTCTC 1 cut(s) 156
BstNI CCWGG 1 cut(s) 81
BstSCI CCNGG 1 cut(s) 79
BstSLI GKGCMC 1 cut(s) 208
BsuRI GGCC 2 cut(s) 35, 79
BtrI CACGTC 1 cut(s) 31
Csp6I GTAC 1 cut(s) 192
CviAII CATG 1 cut(s) 136
CviJI RGCY 3 cut(s) 35, 79, 234
CviKI_1 RGCY 3 cut(s) 35, 79, 234
CviQI GTAC 1 cut(s) 192
EaeI YGGCCR 1 cut(s) 33
Eco130I CCWWGG 1 cut(s) 69
Eco147I AGGCCT 1 cut(s) 79
EcoRII CCWGG 1 cut(s) 79
EcoT14I CCWWGG 1 cut(s) 69
ErhI CCWWGG 1 cut(s) 69
FaeI CATG 1 cut(s) 139
FaiI YATR 5 cut(s) 137, 250, 282, 293, 295
FatI CATG 1 cut(s) 135
Fnu4HI GCNGC 1 cut(s) 133
Fsp4HI GCNGC 1 cut(s) 133
GluI GCNGC 1 cut(s) 133
HaeIII GGCC 2 cut(s) 35, 79
Hin1I GRCGYC 1 cut(s) 19
Hin1II CATG 1 cut(s) 139
HinfI GANTC 2 cut(s) 39, 139
Hpy188I TCNGA 1 cut(s) 44
Hpy188III TCNNGA 1 cut(s) 155
Hpy99I CGWCG 1 cut(s) 24
HpyAV CCTTC 2 cut(s) 152, 218
HpyCH4III ACNGT 1 cut(s) 228
HpyCH4IV ACGT 2 cut(s) 19, 30
HpyCH4V TGCA 1 cut(s) 97
HpySE526I ACGT 2 cut(s) 19, 30
Hsp92I GRCGYC 1 cut(s) 19
Hsp92II CATG 1 cut(s) 139
LpnPI CCDG 6 cut(s) 28, 48, 49, 66, 93, 214
MaeII ACGT 2 cut(s) 19, 30
MaeIII GTNAC 1 cut(s) 222
MhlI GDGCHC 1 cut(s) 208
MlsI TGGCCA 1 cut(s) 35
MluCI AATT 1 cut(s) 6
MluNI TGGCCA 1 cut(s) 35
MlyI GAGTC 1 cut(s) 133
MnlI CCTC 2 cut(s) 155, 189
Mox20I TGGCCA 1 cut(s) 35
MscI TGGCCA 1 cut(s) 35
MseI TTAA 3 cut(s) 9, 50, 230
Msp20I TGGCCA 1 cut(s) 35
MspR9I CCNGG 1 cut(s) 81
MvaI CCWGG 1 cut(s) 81
NlaIII CATG 1 cut(s) 139
NlaIV GGNNCC 1 cut(s) 67
NmuCI GTSAC 1 cut(s) 222
PceI AGGCCT 1 cut(s) 79
PfeI GAWTC 1 cut(s) 39
PkrI GCNGC 1 cut(s) 134
PleI GAGTC 1 cut(s) 133
PpsI GAGTC 1 cut(s) 133
PshBI ATTAAT 1 cut(s) 9
Psp6I CCWGG 1 cut(s) 79
PspGI CCWGG 1 cut(s) 79
PspN4I GGNNCC 1 cut(s) 67
RsaI GTAC 1 cut(s) 193
RsaNI GTAC 1 cut(s) 192
SaqAI TTAA 3 cut(s) 9, 50, 230
SatI GCNGC 1 cut(s) 133
SchI GAGTC 1 cut(s) 133
ScrFI CCNGG 1 cut(s) 81
SduI GDGCHC 1 cut(s) 208
SetI ASST 2 cut(s) 22, 33
SmlI CTYRAG 1 cut(s) 153
SmoI CTYRAG 1 cut(s) 153
Sse9I AATT 1 cut(s) 6
SseBI AGGCCT 1 cut(s) 79
SsiI CCGC 1 cut(s) 132
StuI AGGCCT 1 cut(s) 79
StyD4I CCNGG 1 cut(s) 79
StyI CCWWGG 1 cut(s) 69
TaaI ACNGT 1 cut(s) 228
TaiI ACGT 2 cut(s) 22, 33
TaqI TCGA 2 cut(s) 22, 145
TasI AATT 1 cut(s) 6
TauI GCSGC 1 cut(s) 135
TfiI GAWTC 1 cut(s) 39
Tru1I TTAA 3 cut(s) 9, 50, 230
Tru9I TTAA 3 cut(s) 9, 50, 230
TseFI GTSAC 1 cut(s) 222
Tsp45I GTSAC 1 cut(s) 222
TspDTI ATGAA 1 cut(s) 249
TspGWI ACGGA 1 cut(s) 179
VspI ATTAAT 1 cut(s) 9
ZraI GACGTC 1 cut(s) 20
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.