Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

tig00000808

Orthogroup ID

OG0019273

Physical Location & Seq

Genomic Coordinates Forward (+)

28440 .. 30864

Gene Structure 2425 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom808g00060.6

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1218 bp

ATGAAAGCGCATGATACTTATGCCAAGAATTTACTTAACATGATTGTGAAGTTTCCTTATATCCTAGCATCAAATTTATGCATGCAAATTAAGTGTGCACTCTCAATCCATATACATAAACAAGTTTTAATTCAAATAGATAAAGCCATGGTTTCGAAATTCCCCCTAGCCAAAAGGGGATTAGTTCCTCATACTCGCAAAATTACACCTAAAACGTTTCAGCAATTCCAAGTCGAATGGCATGCACAACTAGGGCTTTCCTTCTTCTTCCTTGCTGTTGCACAAGGTGTGGGTGATGGTTTTGGGGGTTATGAACATTGTATTCTTGTTGTATATGGAGGTTGCGGCAAGGGTTTTCTGAATAGCATAAAGGGTTCATCCGAATTTGTGGCTGAAAATATGTATAAATATTTATGGATTAGGGCCTTAGGGTTCGGTACAAGTAAGTTAAATCCACTTAATAGAGGGTTTGGCCCAATTAGCCTAATAAATCAGAATCCAAAAGGGAAAAGGTTTAGGAAATTCGTCCAAAATTGGATAAGGCTTGTAGAAATCATGTTTTTAGGTCCATTTGCAGCTATGATTACGGATAAGGTTGTTAGGATAAGTTTCCATATTTCTTGCTCTTTCCTTATCTTCTTTGTCTTGAACTTTCCTTTTATGATTTGTAGCATGTTCCTAATACAAGCTATCCATTTAGTGCCCAAAACTGCTCCAAAATGCACCAAAATGCACTTTCTTGAAATAATAACACAAATGCACAAGAACAAGCTAACTAAGTCGCATAAATATGCTCTTATCAAGCTAGGTTCTAGTTGGAAAAAATCAAAATGCTTGCAATTTGAGGTTGATGCTGATTACAGGTATATGAAAGTTTATGATCGTTTAATGGTGGAACTTAGCTTGGTAAATTGCATCATCAGCCCGGGGCAGGGACTTGCTTGTGTGCTGGGGAATTGCAAGAATTTAGAAAAGATTCACTTGGACATGTGTGTTGGCGATATAGTTGAGAAGGGCTTTGCTATCCCAGCGAAGAAGGAGGAAGAAATCACTGAAACAGAGAGGAAAATGATGAAGGAGAAAATCGTCAAAGATGTTAAGGCACTTGGAATTATCCAAGGGGCAGTTTCTAATCAAATCTTTTTGAGAATCGCCATCCAAGAGACTGCAAATGCTGCTTGGAATGTCTTGAAGCAAGAATTTGTAGGAGATAAATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko04014 map04014

Pfam Domains

Protein Families

F-box LRR_6

Protein Analysis

406

Amino Acids

45.97

Weight (kDa)

9.58

Isoelectric Point (pI)

33.17

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0019273)

Species	Orthologous Gene IDs
malus_domestica	MD04G1148800.v1.1 MD14G1241300.v1.1 MD15G1021400.v1.1 MD15G1071900.v1.1
pyrus_communis	pycom12g04970 pycom13g27840 pycom17g17800 pycom808g00060

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	345
AclI	AACGTT	1 cut(s)	215
AcsI	RAATTY	7 cut(s)	28, 73, 158, 383, 521, 964, 1199
AdeI	CACNNNGTG	1 cut(s)	287
AfaI	GTAC	1 cut(s)	439
AfiI	CCNNNNNNNGG	2 cut(s)	931, 932
AflIII	ACRYGT	1 cut(s)	987
AgsI	TTSAA	4 cut(s)	134, 649, 743, 1192
AluBI	AGCT	5 cut(s)	578, 689, 772, 805, 903
AluI	AGCT	5 cut(s)	578, 689, 772, 805, 903
Alw21I	GWGCWC	1 cut(s)	100
Alw26I	GTCTC	1 cut(s)	1157
Alw44I	GTGCAC	1 cut(s)	96
Ama87I	CYCGRG	1 cut(s)	925
AoxI	GGCC	2 cut(s)	423, 472
ApaLI	GTGCAC	1 cut(s)	96
ApeKI	GCWGC	2 cut(s)	575, 1175
ApoI	RAATTY	7 cut(s)	28, 73, 158, 383, 521, 964, 1199
Asp700I	GAANNNNTTC	1 cut(s)	975
AspLEI	GCGC	1 cut(s)	10
AspS9I	GGNCC	3 cut(s)	423, 473, 566
AsuC2I	CCSGG	2 cut(s)	926, 927
AsuHPI	GGTGA	1 cut(s)	305
AsuII	TTCGAA	1 cut(s)	155
AvaI	CYCGRG	1 cut(s)	925
AvaII	GGWCC	1 cut(s)	566
AxyI	CCTNAGG	1 cut(s)	427
BaeGI	GKGCMC	2 cut(s)	100, 705
Bbv12I	GWGCWC	1 cut(s)	100
BbvI	GCAGC	2 cut(s)	587, 1162
BccI	CCATC	2 cut(s)	290, 1163
BcgI	CGANNNNNNTGC	2 cut(s)	224, 258
BcnI	CCSGG	2 cut(s)	926, 927
BcoDI	GTCTC	1 cut(s)	1157
BfaI	CTAG	5 cut(s)	65, 167, 251, 806, 813
BisI	GCNGC	3 cut(s)	346, 576, 1176
BlsI	GCNGC	3 cut(s)	347, 577, 1177
Bme1390I	CCNGG	2 cut(s)	926, 927
Bme18I	GGWCC	1 cut(s)	566
BmeT110I	CYCGRG	1 cut(s)	925
BmgT120I	GGNCC	3 cut(s)	423, 473, 566
BmrFI	CCNGG	2 cut(s)	926, 927
BmsI	GCATC	3 cut(s)	77, 841, 924
Bpu14I	TTCGAA	1 cut(s)	155
BpuMI	CCSGG	2 cut(s)	926, 927
BsaJI	CCNNGG	4 cut(s)	147, 925, 926, 1117
Bsc4I	CCNNNNNNNGG	2 cut(s)	931, 932
Bse21I	CCTNAGG	1 cut(s)	427
BseDI	CCNNGG	4 cut(s)	147, 925, 926, 1117
BseGI	GGATG	2 cut(s)	377, 1155
BseLI	CCNNNNNNNGG	2 cut(s)	931, 932
BseSI	GKGCMC	2 cut(s)	100, 705
BseXI	GCAGC	2 cut(s)	587, 1162
BseYI	CCCAGC	2 cut(s)	949, 1027
BshFI	GGCC	2 cut(s)	425, 474
BsiHKAI	GWGCWC	1 cut(s)	100
BsiHKCI	CYCGRG	1 cut(s)	925
BsiSI	CCGG	1 cut(s)	926
BslFI	GGGAC	1 cut(s)	948
BslI	CCNNNNNNNGG	2 cut(s)	931, 932
BsmAI	GTCTC	1 cut(s)	1157
BsmFI	GGGAC	1 cut(s)	948
BsnI	GGCC	2 cut(s)	425, 474
BsoBI	CYCGRG	1 cut(s)	925
Bsp119I	TTCGAA	1 cut(s)	155
Bsp1286I	GDGCHC	2 cut(s)	100, 705
Bsp143I	GATC	1 cut(s)	880
Bsp19I	CCATGG	1 cut(s)	147
BspACI	CCGC	1 cut(s)	345
BspANI	GGCC	2 cut(s)	425, 474
BspT104I	TTCGAA	1 cut(s)	155
BssECI	CCNNGG	4 cut(s)	147, 925, 926, 1117
BssMI	GATC	1 cut(s)	880
BssT1I	CCWWGG	2 cut(s)	147, 1117
BstAPI	GCANNNNNTGC	1 cut(s)	1175
BstBI	TTCGAA	1 cut(s)	155
BstC8I	GCNNGC	3 cut(s)	83, 243, 836
BstDEI	CTNAG	3 cut(s)	427, 777, 899
BstDSI	CCRYGG	1 cut(s)	147
BstF5I	GGATG	2 cut(s)	377, 1155
BstHHI	GCGC	1 cut(s)	10
BstKTI	GATC	1 cut(s)	883
BstMAI	GTCTC	1 cut(s)	1157
BstMBI	GATC	1 cut(s)	880
BstMWI	GCNNNNNNNGC	4 cut(s)	480, 921, 1028, 1175
BstNSI	RCATGY	4 cut(s)	85, 245, 676, 991
BstSCI	CCNGG	2 cut(s)	924, 925
BstSLI	GKGCMC	2 cut(s)	100, 705
BstV1I	GCAGC	2 cut(s)	587, 1162
Bsu36I	CCTNAGG	1 cut(s)	427
BsuRI	GGCC	2 cut(s)	425, 474
BtgI	CCRYGG	1 cut(s)	147
BtsCI	GGATG	2 cut(s)	377, 1155
BtsIMutI	CAGTG	1 cut(s)	1050
Cac8I	GCNNGC	3 cut(s)	83, 243, 836
CfoI	GCGC	1 cut(s)	10
Cfr13I	GGNCC	3 cut(s)	423, 473, 566
Cfr9I	CCCGGG	1 cut(s)	925
Csp6I	GTAC	1 cut(s)	438
CviAII	CATG	8 cut(s)	11, 40, 82, 148, 242, 556, 673, 988
CviQI	GTAC	1 cut(s)	438
DdeI	CTNAG	3 cut(s)	427, 777, 899
DpnI	GATC	1 cut(s)	882
DpnII	GATC	1 cut(s)	880
DraIII	CACNNNGTG	1 cut(s)	287
Eco130I	CCWWGG	2 cut(s)	147, 1117
Eco47I	GGWCC	1 cut(s)	566
Eco81I	CCTNAGG	1 cut(s)	427
Eco88I	CYCGRG	1 cut(s)	925
EcoO109I	RGGNCCY	1 cut(s)	423
EcoT14I	CCWWGG	2 cut(s)	147, 1117
EcoT22I	ATGCAT	1 cut(s)	83
ErhI	CCWWGG	2 cut(s)	147, 1117
FaeI	CATG	8 cut(s)	14, 43, 85, 151, 245, 559, 676, 991
FalI	AAGNNNNNCTT	2 cut(s)	965, 997
FaqI	GGGAC	1 cut(s)	948
FatI	CATG	8 cut(s)	10, 39, 81, 147, 241, 555, 672, 987
Fnu4HI	GCNGC	3 cut(s)	346, 576, 1176
FokI	GGATG	2 cut(s)	364, 1142
Fsp4HI	GCNGC	3 cut(s)	346, 576, 1176
FspBI	CTAG	5 cut(s)	65, 167, 251, 806, 813
GlaI	GCGC	1 cut(s)	9
GluI	GCNGC	3 cut(s)	346, 576, 1176
GsaI	CCCAGC	2 cut(s)	953, 1031
HaeIII	GGCC	2 cut(s)	425, 474
HapII	CCGG	1 cut(s)	926
HhaI	GCGC	1 cut(s)	10
Hin1II	CATG	8 cut(s)	14, 43, 85, 151, 245, 559, 676, 991
Hin6I	GCGC	1 cut(s)	8
HinP1I	GCGC	1 cut(s)	8
HinfI	GANTC	3 cut(s)	496, 976, 1149
HpaII	CCGG	1 cut(s)	926
HphI	GGTGA	1 cut(s)	305
Hpy166II	GTNNAC	1 cut(s)	98
Hpy188I	TCNGA	3 cut(s)	360, 382, 495
Hpy188III	TCNNGA	3 cut(s)	646, 740, 1189
Hpy8I	GTNNAC	1 cut(s)	98
HpyAV	CCTTC	4 cut(s)	271, 1006, 1030, 1069
HpyCH4IV	ACGT	1 cut(s)	215
HpyF10VI	GCNNNNNNNGC	4 cut(s)	480, 921, 1028, 1175
HpyF3I	CTNAG	3 cut(s)	427, 777, 899
HpySE526I	ACGT	1 cut(s)	215
Hsp92II	CATG	8 cut(s)	14, 43, 85, 151, 245, 559, 676, 991
HspAI	GCGC	1 cut(s)	8
Kzo9I	GATC	1 cut(s)	880
LmnI	GCTCC	1 cut(s)	718
LpnPI	CCDG	5 cut(s)	847, 917, 935, 939, 1041
Lsp1109I	GCAGC	2 cut(s)	587, 1162
LweI	GCATC	3 cut(s)	77, 841, 924
MaeI	CTAG	5 cut(s)	65, 167, 251, 806, 813
MaeII	ACGT	1 cut(s)	215
MalI	GATC	1 cut(s)	882
MboI	GATC	1 cut(s)	880
MboII	GAAGA	5 cut(s)	256, 259, 628, 1045, 1055
MhlI	GDGCHC	2 cut(s)	100, 705
MmeI	TCCRAC	1 cut(s)	797
MnlI	CCTC	6 cut(s)	198, 332, 458, 838, 1033, 1056
Mph1103I	ATGCAT	1 cut(s)	83
MroXI	GAANNNNTTC	1 cut(s)	975
MseI	TTAA	7 cut(s)	36, 90, 128, 449, 459, 887, 1098
MslI	CAYNNNNRTG	3 cut(s)	44, 728, 789
MspI	CCGG	1 cut(s)	926
MspR9I	CCNGG	2 cut(s)	926, 927
MwoI	GCNNNNNNNGC	4 cut(s)	480, 921, 1028, 1175
NciI	CCSGG	2 cut(s)	926, 927
NcoI	CCATGG	1 cut(s)	147
NdeII	GATC	1 cut(s)	880
NlaIII	CATG	8 cut(s)	14, 43, 85, 151, 245, 559, 676, 991
NsiI	ATGCAT	1 cut(s)	83
NspI	RCATGY	4 cut(s)	85, 245, 676, 991
NspV	TTCGAA	1 cut(s)	155
PaeI	GCATGC	2 cut(s)	85, 245
PciI	ACATGT	1 cut(s)	987
PdmI	GAANNNNTTC	1 cut(s)	975
PfeI	GAWTC	3 cut(s)	496, 976, 1149
PkrI	GCNGC	3 cut(s)	347, 577, 1177
PscI	ACATGT	1 cut(s)	987
Psp1406I	AACGTT	1 cut(s)	215
PspFI	CCCAGC	2 cut(s)	949, 1027
PspPI	GGNCC	3 cut(s)	423, 473, 566
RsaI	GTAC	1 cut(s)	439
RsaNI	GTAC	1 cut(s)	438
RseI	CAYNNNNRTG	3 cut(s)	44, 728, 789
SaqAI	TTAA	7 cut(s)	36, 90, 128, 449, 459, 887, 1098
SatI	GCNGC	3 cut(s)	346, 576, 1176
Sau3AI	GATC	1 cut(s)	880
Sau96I	GGNCC	3 cut(s)	423, 473, 566
ScrFI	CCNGG	2 cut(s)	926, 927
SduI	GDGCHC	2 cut(s)	100, 705
SfaNI	GCATC	3 cut(s)	77, 841, 924
SfuI	TTCGAA	1 cut(s)	155
SinI	GGWCC	1 cut(s)	566
SmaI	CCCGGG	1 cut(s)	927
SmiMI	CAYNNNNRTG	3 cut(s)	44, 728, 789
SphI	GCATGC	2 cut(s)	85, 245
SsiI	CCGC	1 cut(s)	345
SspI	AATATT	1 cut(s)	410
SspMI	CTAG	5 cut(s)	65, 167, 251, 806, 813
StyD4I	CCNGG	2 cut(s)	924, 925
StyI	CCWWGG	2 cut(s)	147, 1117
TaiI	ACGT	1 cut(s)	218
TaqI	TCGA	2 cut(s)	155, 234
TauI	GCSGC	1 cut(s)	348
TfiI	GAWTC	3 cut(s)	496, 976, 1149
Tru1I	TTAA	7 cut(s)	36, 90, 128, 449, 459, 887, 1098
Tru9I	TTAA	7 cut(s)	36, 90, 128, 449, 459, 887, 1098
TscAI	CASTG	1 cut(s)	1057
TseI	GCWGC	2 cut(s)	575, 1175
TspDTI	ATGAA	5 cut(s)	17, 327, 366, 884, 1088
TspGWI	ACGGA	1 cut(s)	602
TspMI	CCCGGG	1 cut(s)	925
TspRI	CASTG	1 cut(s)	1057
VneI	GTGCAC	1 cut(s)	96
VpaK11BI	GGWCC	1 cut(s)	566
XapI	RAATTY	7 cut(s)	28, 73, 158, 383, 521, 964, 1199
XceI	RCATGY	4 cut(s)	85, 245, 676, 991
XmaI	CCCGGG	1 cut(s)	925
XmnI	GAANNNNTTC	1 cut(s)	975
XspI	CTAG	5 cut(s)	65, 167, 251, 806, 813
Zsp2I	ATGCAT	1 cut(s)	83

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.