MD15G1021400.v1.1

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr15
OG0019273
Physical Location & Seq
Reverse (-)
1243131 .. 1243313
183 bp
Loading structure...
UTR
Exon/CDS
Intron
MD15G1021400.v1.1.491

Sequence Viewer

Length: 183 bp
ATGTGGCCACAGTTCAGTCAAGTCACCCAGCTTGTTGATAAAAAGAGGATTCTCAATGTCTCGTACCAAGATTTTATAGGTTTTTATCATGGAGGTGAATTGTCTGCCCTCTCATTTTCATACTCTTCTTATCCCCTCATGTTTGTGTGGTCACGGTTAAGCCACGTCAACATTTTATATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

61

Amino Acids

7.1

Weight (kDa)

8.1

Isoelectric Point (pI)

43.32

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AcoI YGGCCR 1 cut(s) 5
AfaI GTAC 1 cut(s) 65
AjiI CACGTC 1 cut(s) 166
AluBI AGCT 1 cut(s) 31
AluI AGCT 1 cut(s) 31
Alw26I GTCTC 1 cut(s) 64
AoxI GGCC 1 cut(s) 5
AsuHPI GGTGA 2 cut(s) 16, 107
BalI TGGCCA 1 cut(s) 7
BcoDI GTCTC 1 cut(s) 64
BmgBI CACGTC 1 cut(s) 166
BseYI CCCAGC 1 cut(s) 27
BshFI GGCC 1 cut(s) 7
BsmAI GTCTC 1 cut(s) 64
BsnI GGCC 1 cut(s) 7
BspANI GGCC 1 cut(s) 7
Bst4CI ACNGT 2 cut(s) 12, 156
Bst6I CTCTTC 1 cut(s) 130
BstMAI GTCTC 1 cut(s) 64
BsuRI GGCC 1 cut(s) 7
BtrI CACGTC 1 cut(s) 166
Csp6I GTAC 1 cut(s) 64
CviAII CATG 2 cut(s) 89, 139
CviJI RGCY 3 cut(s) 7, 31, 162
CviKI_1 RGCY 3 cut(s) 7, 31, 162
CviQI GTAC 1 cut(s) 64
EaeI YGGCCR 1 cut(s) 5
Eam1104I CTCTTC 1 cut(s) 130
EarI CTCTTC 1 cut(s) 130
FaeI CATG 2 cut(s) 92, 142
FaiI YATR 5 cut(s) 77, 90, 121, 140, 178
FatI CATG 2 cut(s) 88, 138
GsaI CCCAGC 1 cut(s) 31
HaeIII GGCC 1 cut(s) 7
Hin1II CATG 2 cut(s) 92, 142
HincII GTYRAC 1 cut(s) 169
HindII GTYRAC 1 cut(s) 169
HinfI GANTC 1 cut(s) 49
HphI GGTGA 2 cut(s) 16, 107
Hpy166II GTNNAC 1 cut(s) 169
Hpy8I GTNNAC 1 cut(s) 169
HpyCH4III ACNGT 2 cut(s) 12, 156
HpyCH4IV ACGT 1 cut(s) 165
HpySE526I ACGT 1 cut(s) 165
Hsp92II CATG 2 cut(s) 92, 142
LpnPI CCDG 1 cut(s) 41
MaeII ACGT 1 cut(s) 165
MaeIII GTNAC 2 cut(s) 22, 150
MboII GAAGA 1 cut(s) 117
MlsI TGGCCA 1 cut(s) 7
MluCI AATT 1 cut(s) 98
MluNI TGGCCA 1 cut(s) 7
MnlI CCTC 4 cut(s) 39, 86, 119, 146
Mox20I TGGCCA 1 cut(s) 7
MscI TGGCCA 1 cut(s) 7
MseI TTAA 1 cut(s) 158
MslI CAYNNNNRTG 2 cut(s) 93, 143
Msp20I TGGCCA 1 cut(s) 7
NlaIII CATG 2 cut(s) 92, 142
NmuCI GTSAC 2 cut(s) 22, 150
PfeI GAWTC 1 cut(s) 49
PspFI CCCAGC 1 cut(s) 27
RsaI GTAC 1 cut(s) 65
RsaNI GTAC 1 cut(s) 64
RseI CAYNNNNRTG 2 cut(s) 93, 143
SaqAI TTAA 1 cut(s) 158
SetI ASST 4 cut(s) 33, 82, 97, 168
SgeI CNNG 9 cut(s) 32, 40, 44, 73, 80, 101, 151, 165, 176
SmiMI CAYNNNNRTG 2 cut(s) 93, 143
Sse9I AATT 1 cut(s) 98
TaaI ACNGT 2 cut(s) 12, 156
TaiI ACGT 1 cut(s) 168
TasI AATT 1 cut(s) 98
TfiI GAWTC 1 cut(s) 49
Tru1I TTAA 1 cut(s) 158
Tru9I TTAA 1 cut(s) 158
TseFI GTSAC 2 cut(s) 22, 150
Tsp45I GTSAC 2 cut(s) 22, 150
TspDTI ATGAA 1 cut(s) 108
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.