Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr12

Orthogroup ID

OG0019273

Physical Location & Seq

Genomic Coordinates Forward (+)

4920633 .. 4921741

Gene Structure 1109 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom12g04970.5

Sequence Viewer

CDS Protein Promoter (2k)

Length: 780 bp

ATGGCCAAAATGTCCAAGGCTTCTCCTCTCTTCTTTCTCCTTCTTTGCTGCTGCACAAGGGTGTTTGGGTATGAATTATGGCAATGGATGGATAGGTTGGATGGTGGTAGGGATTGTGTATATATAGAGGGAGAAAGGTTAAGAGAAAAGGAAGGGAAGTTGCAGCATGGACAAAAAATAGGAAATAGGAAAGGGAAATGTGGTTCCTTGCACGGCAAGGAAAGGAAAGGAAGGGGTAGGGTATTTAAGTGTCCTAAATTGATTAGGAACCCTCCTTGCAGCTGGGAAATAAGTAGGAAAAGATTAGGATTGACTAATAATTTCTTCCATCTCCTTAGCAGATTCCTAGCCTTCTTTGGTCTTCAATTTCGTCCATCCACATTGCTCCAAGCATGTGCAATCCATTTAAAGCCCAAAACTACTCCAAAATGCTCCAAATTGCACTTTCTTGCCACCTTAACCATTTGGACCTACAAACATACGAAAATACTAATTAAATCGCTAAATATGCTCATATCACTGGATCGAGTTATGCAGATCTTCGTACGAATGAAGACCATATGTCAATCCCATGAGTTCTGGGATATGGTTAAGAAAGGCTTCGATGGTCCAGTAAAGAAGAAGGATGAACTTACTGCGAACGAGAGCAAGCTGTTAAGGGAGAATATAGTCAAAGATGTGAAGGCCCTTGTCATTATTCAGAGTGCAGTCTCTGATCAGATCAGATCTTTCCAAGGATTGCTACACTATAAACGGCGAATGAGGCCTAAAATGTGTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF4219 Retrotran_gag_2 gag_pre-integrs zf-CCHC

Protein Analysis

260

Amino Acids

30.19

Weight (kDa)

10.13

Isoelectric Point (pI)

37.63

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0019273)

Species	Orthologous Gene IDs
malus_domestica	MD04G1148800.v1.1 MD14G1241300.v1.1 MD15G1021400.v1.1 MD15G1071900.v1.1
pyrus_communis	pycom12g04970 pycom13g27840 pycom17g17800 pycom808g00060

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	1 cut(s)	531
AcoI	YGGCCR	1 cut(s)	3
AfaI	GTAC	1 cut(s)	546
AgsI	TTSAA	1 cut(s)	365
AhdI	GACNNNNNGTC	1 cut(s)	561
AleI	CACNNNNGTG	1 cut(s)	59
AloI	GAACNNNNNNTCC	2 cut(s)	187, 219
AluBI	AGCT	2 cut(s)	282, 652
AluI	AGCT	2 cut(s)	282, 652
Alw26I	GTCTC	1 cut(s)	715
AlwI	GGATC	1 cut(s)	531
AlwNI	CAGNNNCTG	1 cut(s)	713
AoxI	GGCC	3 cut(s)	3, 684, 764
ApeKI	GCWGC	4 cut(s)	48, 51, 163, 279
Asp700I	GAANNNNTTC	1 cut(s)	599
AspS9I	GGNCC	3 cut(s)	468, 608, 685
AvaII	GGWCC	2 cut(s)	468, 608
BalI	TGGCCA	1 cut(s)	5
BbsI	GAAGAC	2 cut(s)	353, 560
BbvI	GCAGC	4 cut(s)	35, 38, 175, 291
BccI	CCATC	5 cut(s)	82, 95, 336, 382, 599
BceAI	ACGGC	2 cut(s)	229, 770
BclI	TGATCA	1 cut(s)	715
BcoDI	GTCTC	1 cut(s)	715
BfaI	CTAG	1 cut(s)	347
BglII	AGATCT	2 cut(s)	537, 725
BisI	GCNGC	4 cut(s)	49, 52, 164, 280
BlsI	GCNGC	4 cut(s)	50, 53, 165, 281
Bme18I	GGWCC	2 cut(s)	468, 608
BmeRI	GACNNNNNGTC	1 cut(s)	561
BmgT120I	GGNCC	3 cut(s)	468, 608, 685
BmiI	GGNNCC	2 cut(s)	205, 269
BpiI	GAAGAC	2 cut(s)	353, 560
Bpu10I	CCTNAGC	1 cut(s)	335
BsaJI	CCNNGG	2 cut(s)	15, 733
Bse1I	ACTGG	2 cut(s)	525, 611
Bse3DI	GCAATG	2 cut(s)	89, 380
BseDI	CCNNGG	2 cut(s)	15, 733
BseGI	GGATG	4 cut(s)	93, 106, 374, 631
BseMI	GCAATG	2 cut(s)	89, 380
BseNI	ACTGG	2 cut(s)	525, 611
BseRI	GAGGAG	1 cut(s)	15
BseXI	GCAGC	4 cut(s)	35, 38, 175, 291
BseYI	CCCAGC	1 cut(s)	282
BsgI	GTGCAG	2 cut(s)	37, 726
BshFI	GGCC	3 cut(s)	5, 686, 766
BsiWI	CGTACG	1 cut(s)	544
BsmAI	GTCTC	1 cut(s)	715
BsnI	GGCC	3 cut(s)	5, 686, 766
Bsp143I	GATC	5 cut(s)	523, 537, 715, 720, 725
BspANI	GGCC	3 cut(s)	5, 686, 766
BspLI	GGNNCC	2 cut(s)	205, 269
BspPI	GGATC	1 cut(s)	531
BsrDI	GCAATG	2 cut(s)	89, 380
BsrI	ACTGG	2 cut(s)	525, 611
BssECI	CCNNGG	2 cut(s)	15, 733
BssMI	GATC	5 cut(s)	523, 537, 715, 720, 725
BssT1I	CCWWGG	2 cut(s)	15, 733
Bst6I	CTCTTC	1 cut(s)	35
BstC8I	GCNNGC	1 cut(s)	650
BstDEI	CTNAG	1 cut(s)	335
BstF5I	GGATG	4 cut(s)	93, 106, 374, 631
BstKTI	GATC	5 cut(s)	526, 540, 718, 723, 728
BstMAI	GTCTC	1 cut(s)	715
BstMBI	GATC	5 cut(s)	523, 537, 715, 720, 725
BstMWI	GCNNNNNNNGC	2 cut(s)	508, 763
BstNSI	RCATGY	1 cut(s)	396
BstV1I	GCAGC	4 cut(s)	35, 38, 175, 291
BstV2I	GAAGAC	2 cut(s)	353, 560
BstX2I	RGATCY	2 cut(s)	537, 725
BstYI	RGATCY	2 cut(s)	537, 725
BsuRI	GGCC	3 cut(s)	5, 686, 766
BtsCI	GGATG	4 cut(s)	93, 106, 374, 631
BtsIMutI	CAGTG	1 cut(s)	518
Cac8I	GCNNGC	1 cut(s)	650
CaiI	CAGNNNCTG	1 cut(s)	713
Cfr13I	GGNCC	3 cut(s)	468, 608, 685
Csp6I	GTAC	1 cut(s)	545
CviAII	CATG	3 cut(s)	167, 393, 572
CviJI	RGCY	9 cut(s)	5, 20, 282, 350, 412, 600, 652, 686, 766
CviKI_1	RGCY	9 cut(s)	5, 20, 282, 350, 412, 600, 652, 686, 766
CviQI	GTAC	1 cut(s)	545
DdeI	CTNAG	1 cut(s)	335
DpnI	GATC	5 cut(s)	525, 539, 717, 722, 727
DpnII	GATC	5 cut(s)	523, 537, 715, 720, 725
DraI	TTTAAA	1 cut(s)	408
DriI	GACNNNNNGTC	1 cut(s)	561
EaeI	YGGCCR	1 cut(s)	3
Eam1104I	CTCTTC	1 cut(s)	35
Eam1105I	GACNNNNNGTC	1 cut(s)	561
EarI	CTCTTC	1 cut(s)	35
Eco130I	CCWWGG	2 cut(s)	15, 733
Eco147I	AGGCCT	1 cut(s)	766
Eco47I	GGWCC	2 cut(s)	468, 608
EcoO109I	RGGNCCY	1 cut(s)	685
EcoT14I	CCWWGG	2 cut(s)	15, 733
ErhI	CCWWGG	2 cut(s)	15, 733
FaeI	CATG	3 cut(s)	170, 396, 575
FalI	AAGNNNNNCTT	2 cut(s)	584, 616
FatI	CATG	3 cut(s)	166, 392, 571
FauNDI	CATATG	1 cut(s)	560
FbaI	TGATCA	1 cut(s)	715
Fnu4HI	GCNGC	4 cut(s)	49, 52, 164, 280
FokI	GGATG	4 cut(s)	100, 113, 361, 638
Fsp4HI	GCNGC	4 cut(s)	49, 52, 164, 280
FspBI	CTAG	1 cut(s)	347
GluI	GCNGC	4 cut(s)	49, 52, 164, 280
GsaI	CCCAGC	1 cut(s)	286
HaeIII	GGCC	3 cut(s)	5, 686, 766
Hin1II	CATG	3 cut(s)	170, 396, 575
HinfI	GANTC	1 cut(s)	342
Hpy188I	TCNGA	4 cut(s)	702, 715, 720, 725
HpyAV	CCTTC	6 cut(s)	50, 146, 225, 361, 616, 676
HpyCH4V	TGCA	8 cut(s)	54, 163, 211, 279, 398, 442, 535, 707
HpyF10VI	GCNNNNNNNGC	2 cut(s)	508, 763
HpyF3I	CTNAG	1 cut(s)	335
Hsp92II	CATG	3 cut(s)	170, 396, 575
Ksp22I	TGATCA	1 cut(s)	715
Kzo9I	GATC	5 cut(s)	523, 537, 715, 720, 725
LmnI	GCTCC	2 cut(s)	390, 437
LpnPI	CCDG	4 cut(s)	268, 506, 565, 624
Lsp1109I	GCAGC	4 cut(s)	35, 38, 175, 291
MaeI	CTAG	1 cut(s)	347
MalI	GATC	5 cut(s)	525, 539, 717, 722, 727
MboI	GATC	5 cut(s)	523, 537, 715, 720, 725
MboII	GAAGA	6 cut(s)	22, 316, 353, 532, 565, 631
MflI	RGATCY	2 cut(s)	537, 725
MlsI	TGGCCA	1 cut(s)	5
MluCI	AATT	6 cut(s)	74, 257, 319, 365, 437, 492
MluNI	TGGCCA	1 cut(s)	5
MmeI	TCCRAC	1 cut(s)	78
MnlI	CCTC	4 cut(s)	36, 121, 282, 756
Mox20I	TGGCCA	1 cut(s)	5
MroXI	GAANNNNTTC	1 cut(s)	599
MscI	TGGCCA	1 cut(s)	5
MseI	TTAA	7 cut(s)	140, 246, 407, 458, 495, 591, 656
MslI	CAYNNNNRTG	1 cut(s)	59
Msp20I	TGGCCA	1 cut(s)	5
MspA1I	CMGCKG	1 cut(s)	282
MwoI	GCNNNNNNNGC	2 cut(s)	508, 763
NdeI	CATATG	1 cut(s)	560
NdeII	GATC	5 cut(s)	523, 537, 715, 720, 725
NlaIII	CATG	3 cut(s)	170, 396, 575
NlaIV	GGNNCC	2 cut(s)	205, 269
NspI	RCATGY	1 cut(s)	396
OliI	CACNNNNGTG	1 cut(s)	59
PceI	AGGCCT	1 cut(s)	766
PdmI	GAANNNNTTC	1 cut(s)	599
PfeI	GAWTC	1 cut(s)	342
Pfl23II	CGTACG	1 cut(s)	544
PkrI	GCNGC	4 cut(s)	50, 53, 165, 281
PspFI	CCCAGC	1 cut(s)	282
PspLI	CGTACG	1 cut(s)	544
PspN4I	GGNNCC	2 cut(s)	205, 269
PspPI	GGNCC	3 cut(s)	468, 608, 685
PstNI	CAGNNNCTG	1 cut(s)	713
PsuI	RGATCY	2 cut(s)	537, 725
PvuII	CAGCTG	1 cut(s)	282
RsaI	GTAC	1 cut(s)	546
RsaNI	GTAC	1 cut(s)	545
RseI	CAYNNNNRTG	1 cut(s)	59
SaqAI	TTAA	7 cut(s)	140, 246, 407, 458, 495, 591, 656
SatI	GCNGC	4 cut(s)	49, 52, 164, 280
Sau3AI	GATC	5 cut(s)	523, 537, 715, 720, 725
Sau96I	GGNCC	3 cut(s)	468, 608, 685
SetI	ASST	6 cut(s)	98, 140, 284, 458, 473, 654
SinI	GGWCC	2 cut(s)	468, 608
SmiMI	CAYNNNNRTG	1 cut(s)	59
Sse9I	AATT	6 cut(s)	74, 257, 319, 365, 437, 492
SseBI	AGGCCT	1 cut(s)	766
SspMI	CTAG	1 cut(s)	347
StuI	AGGCCT	1 cut(s)	766
StyI	CCWWGG	2 cut(s)	15, 733
TaqI	TCGA	2 cut(s)	526, 603
TasI	AATT	6 cut(s)	74, 257, 319, 365, 437, 492
TfiI	GAWTC	1 cut(s)	342
Tru1I	TTAA	7 cut(s)	140, 246, 407, 458, 495, 591, 656
Tru9I	TTAA	7 cut(s)	140, 246, 407, 458, 495, 591, 656
TscAI	CASTG	1 cut(s)	525
TseI	GCWGC	4 cut(s)	48, 51, 163, 279
TspDTI	ATGAA	3 cut(s)	87, 566, 642
TspRI	CASTG	1 cut(s)	525
VpaK11BI	GGWCC	2 cut(s)	468, 608
XceI	RCATGY	1 cut(s)	396
XmnI	GAANNNNTTC	1 cut(s)	599
XspI	CTAG	1 cut(s)	347

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.