Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr15

Orthogroup ID

OG0015227

Physical Location & Seq

Genomic Coordinates Forward (+)

3032032 .. 3034098

Gene Structure 2067 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD15G1043900.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2067 bp

ATGAGGGCAGTGCACTCAATTCTTGACGGCACAGTGAATGCTTTGCGCAAGGTTTCGATAACCCATTGCAGGGAATTCAAATTAGGAGCCCTCGCAGACGTTTACTCGGCCAACAATATCCTCAATGGATATGCGAGATGTCAAGATTTTTATCTTGCACACAAAATGTTTGATGATATGCCTCACAGAGATACTGTCTCTTGGAATACGATGATCGCGGGGCATGTAAACTATGGAAGCTTTGAGGGTGCGTGGGAGATATTGAAATCCATGAAAAGATGTGGGTTTGATTCTGATGGGTATACATTTGGAAGCATACTTAAGGGGGTTGCTTGTGCTTGTCGATGCGATCTTGGGCAGCAAGTGCATTCTACGATTGTTAAGACGGGTTATGCGGGTAATGTTTATTCTGGAAGTGCCCTTTTGGACATGTATGCAAAGTGTGGGAGGGTTGAGGAGGCGTATGTGGTTTTCGAATCCTTGCCAGAACGTAATTCTGTGTCATGGAATGCGCTAATTGCTGGTTTCGTGCAAGTAGGCGATCGCAAGACTGCTTTTTGGTTGTTGAATTGCATGGAGCAGGAGGGAGTGAAGTTTGAGGATGGCACAATTTCTCCACTTCTGACATTGCTTGATGATGTCGAGTTTTACAAGTCTGTTACACAGCTCCATTGTAAAATTATAAAACATGGGCTGGGATGTGAAAGTACAGTGTGCAATGCGACAATTACTTCATACTCAGAATGTGGGTCGATAGAAGATGCGGAAAGAGTGTTTGATGCTGCTTTTGGTAACAGAGATTTGGTAACATGGAATTCCATGCTAGCAGCATACTTGGTTCACAATAACGAACTAGTCGCTTCCAAACTCTTCATCGACATGCAAATGCATGGATTTGAACCAGACATCTACAGTTATACAAGCATCATCAGTGCCTATTCTGAAGTAAATAAAAACCATGGAAACTTCTATCACGGGTTGGTGATAAAAAGGGGATTAGAAAAATCAGAGCCAATCTCAAATGCTTTGATAGCGAGGTATCTCAAGTCAAATAAAAATTCCATGGAAGAAGCGCTGCGTATCTTCGAATCCATGGAGTCTAAGGATCGTGTTTCATGGAACTCCATTTTGACTGGATTCTCACAAATTGGTTTAAATGAAGATGCCTTGAAACTCTTTGGGCACATGAGATTTTCGGGGGTAGAGATTGACCATTATGCTCTCTCAGCTGTTCTCAGGTCATGTTCAGATTTAGCAACCCTCCAACTGGGTCAACAGGTTCATGCATTGACACATAAATCAGGTTTCCAGTCCAATGAATTTGTTGCTAGTTCTTTGATCTTTATGTACACAAAGTGTGGGATCATTGAGGATGCTAGAAAATCTTTTGAAGAGACCCCCAGAGACAGCACAATCACTTGGAACTCGATCATTTTTGGATATGCACAACATGGGCAGGGATATGTTGCACTCGACCTCTTCTTCCAAATGAAGAAGGAAAAGGTGAAACTAGATCATATAACGTTTGTTGCAGTACTAACTGCTTGTAGCCACATGGGTTTAGTAGAACAAGGCAGCAAATTCCTAAAATCTATGGAATCCAATTATGGAATAACCCCGCGAATGGAGCATTATGCTTGTGCAGTAGACCTATATGGGCGCGCTGGGCGTCTAGATGAGGCAAAAGCCTTGATTGAAGCAATGCCATTTAAACCCGACGCAATGGTTTTGAAGACTTTACTTGGTGCCTGTAGGGCTTGTGGGAATATTGAATTAGCTGCTCAAATTGCAGGCCATCTGCTAGACCTAGAGCCGGAAGAGCATTGCACTTACGTTCTTCTCTCCGACATGTATGGACATCTCAAAAGGTGGGATGAGAAAGCTAGTGTAAAGAGGCTTATGAGAGAGAGGGGTGTGAGGAAAGTCCCCGGCTGGAGTTGGATAGAAGTCAAGAATGAGGTGTTTTCTTTCAAAGCCGAAGATCGCTCCCACCCCTATTGCGAAGAGATATATTTCGTGTTGGGAGTTTTGATGGAGGAAATCAGATGGATGTTGCTGCTAATTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0016070 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DYW_deaminase PPR PPR_2

Protein Analysis

689

Amino Acids

77.42

Weight (kDa)

6.02

Isoelectric Point (pI)

43.69

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PPR_2	PF13041	63 - 111	2.1e-11	PPR repeat family
PPR	PF01535	66 - 96	3.6e-06	PPR repeat
TPR_24	PF23276	167 - 260	3.1e-06	Fungal tetratrico peptide repeats
PPR_2	PF13041	267 - 313	2.1e-10	PPR repeat family
PPR_2	PF13041	369 - 416	1.5e-07	PPR repeat family
PPR_2	PF13041	470 - 517	2.3e-09	PPR repeat family
PPR	PF01535	472 - 501	6.7e-06	PPR repeat
E_motif	PF20431	589 - 649	2.6e-13	E motif

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0015227)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G25970
fragaria_vesca	FvH4_3g28520
malus_domestica	MD15G1043900.v1.1
prunus_persica	Prupe.1G397500_v2.0.a1
pyrus_communis	pycom15g04090
rosa_chinensis	RchiOBHm_Chr4g0402431
rosa_laevigata	RLG00000009084
rosa_multiflora	Rmu_co8477433.1_g000001 Rmu_ssc0000330.1_g000025
rosa_roxburghii	Rroxscaffold_5G00347130
rosa_rugosa	Rorug04G0035300
rosa_samantha	Rh4AG112700 Rh4BG105200 Rh4CG119500 Rh4DG104500
rosa_wichuraiana	Rw4G009030

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	683
Acc16I	TGCGCA	1 cut(s)	47
AccB1I	GGYRCC	1 cut(s)	1745
AccI	GTMKAC	2 cut(s)	302, 1647
AccII	CGCG	3 cut(s)	218, 1621, 1662
AciI	CCGC	4 cut(s)	218, 395, 764, 1619
AclI	AACGTT	1 cut(s)	1523
AclWI	GGATC	2 cut(s)	1113, 1370
AcoI	YGGCCR	1 cut(s)	108
AcsI	RAATTY	5 cut(s)	74, 814, 1057, 1319, 1580
AcuI	CTGAAG	1 cut(s)	963
AcyI	GRCGYC	1 cut(s)	1669
AdeI	CACNNNGTG	1 cut(s)	1356
AfaI	GTAC	3 cut(s)	709, 1349, 1536
AfeI	AGCGCT	1 cut(s)	1074
AfiI	CCNNNNNNNGG	5 cut(s)	69, 70, 1267, 1624, 1813
AflII	CTTAAG	1 cut(s)	320
AflIII	ACRYGT	2 cut(s)	429, 1848
AhlI	ACTAGT	1 cut(s)	853
AluBI	AGCT	5 cut(s)	240, 667, 1229, 1778, 1883
AluI	AGCT	5 cut(s)	240, 667, 1229, 1778, 1883
Alw21I	GWGCWC	1 cut(s)	15
Alw26I	GTCTC	3 cut(s)	202, 1388, 1398
Alw44I	GTGCAC	1 cut(s)	11
AlwI	GGATC	2 cut(s)	1113, 1370
Aor51HI	AGCGCT	1 cut(s)	1074
AoxI	GGCC	2 cut(s)	108, 1792
ApaLI	GTGCAC	1 cut(s)	11
ApeKI	GCWGC	7 cut(s)	358, 782, 827, 1075, 1575, 1778, 2056
ApoI	RAATTY	5 cut(s)	74, 814, 1057, 1319, 1580
AsiSI	GCGATCGC	1 cut(s)	544
AspLEI	GCGC	5 cut(s)	48, 514, 1075, 1662, 1664
AsuC2I	CCSGG	1 cut(s)	1929
AsuHPI	GGTGA	2 cut(s)	994, 1516
AsuII	TTCGAA	2 cut(s)	474, 1086
AsuNHI	GCTAGC	1 cut(s)	823
BaeGI	GKGCMC	3 cut(s)	15, 421, 1185
BanI	GGYRCC	1 cut(s)	1745
BanII	GRGCYC	1 cut(s)	91
BbsI	GAAGAC	1 cut(s)	1739
Bbv12I	GWGCWC	1 cut(s)	15
BbvI	GCAGC	7 cut(s)	370, 769, 839, 1062, 1587, 1765, 2043
BccI	CCATC	5 cut(s)	290, 596, 1803, 2026, 2040
BceAI	ACGGC	1 cut(s)	43
BcnI	CCSGG	1 cut(s)	1929
BcoDI	GTCTC	3 cut(s)	202, 1388, 1398
BcuI	ACTAGT	1 cut(s)	853
BfaI	CTAG	9 cut(s)	824, 854, 1329, 1377, 1511, 1673, 1802, 1808, 1884
BfmI	CTRYAG	2 cut(s)	910, 1750
BfoI	RGCGCY	1 cut(s)	1076
BfrI	CTTAAG	1 cut(s)	320
BglI	GCCNNNNNGGC	1 cut(s)	1754
BisI	GCNGC	7 cut(s)	359, 783, 828, 1076, 1576, 1779, 2057
BlsI	GCNGC	7 cut(s)	360, 784, 829, 1077, 1577, 1780, 2058
BmcAI	AGTACT	1 cut(s)	1536
Bme1390I	CCNGG	1 cut(s)	1929
BmiI	GGNNCC	2 cut(s)	88, 1747
BmrFI	CCNGG	1 cut(s)	1929
BmrI	ACTGGG	1 cut(s)	1277
BmsI	GCATC	6 cut(s)	335, 751, 769, 933, 1153, 1363
BmtI	GCTAGC	1 cut(s)	827
BmuI	ACTGGG	1 cut(s)	1277
BpiI	GAAGAC	1 cut(s)	1739
BplI	GAGNNNNNCTC	2 cut(s)	1001, 1033
BpmI	CTGGAG	1 cut(s)	1954
Bpu14I	TTCGAA	2 cut(s)	474, 1086
BpuEI	CTTGAG	1 cut(s)	1028
BpuMI	CCSGG	1 cut(s)	1929
BsaBI	GATNNNNATC	1 cut(s)	150
BsaHI	GRCGYC	1 cut(s)	1669
BsaI	GGTCTC	1 cut(s)	1388
BsaJI	CCNNGG	4 cut(s)	958, 1062, 1092, 1927
BsaXI	ACNNNNNCTCC	2 cut(s)	598, 628
Bsc4I	CCNNNNNNNGG	5 cut(s)	69, 70, 1267, 1624, 1813
Bse1I	ACTGG	3 cut(s)	1138, 1272, 1309
Bse3DI	GCAATG	6 cut(s)	64, 626, 724, 1707, 1728, 1822
Bse8I	GATNNNNATC	1 cut(s)	150
BseDI	CCNNGG	4 cut(s)	958, 1062, 1092, 1927
BseGI	GGATG	5 cut(s)	607, 704, 1378, 1879, 2055
BseJI	GATNNNNATC	1 cut(s)	150
BseLI	CCNNNNNNNGG	5 cut(s)	69, 70, 1267, 1624, 1813
BseMI	GCAATG	6 cut(s)	64, 626, 724, 1707, 1728, 1822
BseMII	CTCAG	3 cut(s)	753, 1239, 1249
BseNI	ACTGG	3 cut(s)	1138, 1272, 1309
BsePI	GCGCGC	1 cut(s)	1660
BseRI	GAGGAG	1 cut(s)	470
BseSI	GKGCMC	3 cut(s)	15, 421, 1185
BseXI	GCAGC	7 cut(s)	370, 769, 839, 1062, 1587, 1765, 2043
BseYI	CCCAGC	2 cut(s)	694, 1664
BsgI	GTGCAG	1 cut(s)	1662
Bsh1236I	CGCG	3 cut(s)	218, 1621, 1662
Bsh1285I	CGRYCG	1 cut(s)	544
BshFI	GGCC	2 cut(s)	110, 1794
BshNI	GGYRCC	1 cut(s)	1745
BsiEI	CGRYCG	1 cut(s)	544
BsiHKAI	GWGCWC	1 cut(s)	15
BsiSI	CCGG	2 cut(s)	1814, 1929
BslFI	GGGAC	1 cut(s)	1910
BslI	CCNNNNNNNGG	5 cut(s)	69, 70, 1267, 1624, 1813
BsmAI	GTCTC	3 cut(s)	202, 1388, 1398
BsmFI	GGGAC	1 cut(s)	1910
BsmI	GAATGC	3 cut(s)	43, 367, 514
BsnI	GGCC	2 cut(s)	110, 1794
Bso31I	GGTCTC	1 cut(s)	1388
Bsp119I	TTCGAA	2 cut(s)	474, 1086
Bsp1286I	GDGCHC	4 cut(s)	15, 91, 421, 1185
Bsp1407I	TGTACA	1 cut(s)	1347
Bsp143I	GATC	9 cut(s)	213, 349, 541, 1105, 1338, 1362, 1428, 1513, 1981
Bsp19I	CCATGG	3 cut(s)	958, 1062, 1092
BspACI	CCGC	4 cut(s)	218, 395, 764, 1619
BspANI	GGCC	2 cut(s)	110, 1794
BspCNI	CTCAG	3 cut(s)	752, 1238, 1248
BspFNI	CGCG	3 cut(s)	218, 1621, 1662
BspLI	GGNNCC	2 cut(s)	88, 1747
BspOI	GCTAGC	1 cut(s)	827
BspPI	GGATC	2 cut(s)	1113, 1370
BspQI	GCTCTTC	1 cut(s)	1812
BspT104I	TTCGAA	2 cut(s)	474, 1086
BspT107I	GGYRCC	1 cut(s)	1745
BspTI	CTTAAG	1 cut(s)	320
BspTNI	GGTCTC	1 cut(s)	1388
BsrDI	GCAATG	6 cut(s)	64, 626, 724, 1707, 1728, 1822
BsrGI	TGTACA	1 cut(s)	1347
BsrI	ACTGG	3 cut(s)	1138, 1272, 1309
BssECI	CCNNGG	4 cut(s)	958, 1062, 1092, 1927
BssHII	GCGCGC	1 cut(s)	1660
BssMI	GATC	9 cut(s)	213, 349, 541, 1105, 1338, 1362, 1428, 1513, 1981
BssNAI	GTATAC	1 cut(s)	303
BssNI	GRCGYC	1 cut(s)	1669
BssT1I	CCWWGG	3 cut(s)	958, 1062, 1092
Bst1107I	GTATAC	1 cut(s)	303
Bst4CI	ACNGT	4 cut(s)	34, 196, 712, 914
Bst6I	CTCTTC	5 cut(s)	875, 1386, 1484, 1812, 1998
BstACI	GRCGYC	1 cut(s)	1669
BstAFI	CTTAAG	1 cut(s)	320
BstAPI	GCANNNNNTGC	1 cut(s)	364
BstAUI	TGTACA	1 cut(s)	1347
BstBI	TTCGAA	2 cut(s)	474, 1086
BstC8I	GCNNGC	3 cut(s)	825, 1662, 1792
BstDEI	CTNAG	4 cut(s)	739, 1101, 1225, 1235
BstDSI	CCRYGG	3 cut(s)	958, 1062, 1092
BstF5I	GGATG	5 cut(s)	607, 704, 1378, 1879, 2055
BstFNI	CGCG	3 cut(s)	218, 1621, 1662
BstH2I	RGCGCY	1 cut(s)	1076
BstHHI	GCGC	5 cut(s)	48, 514, 1075, 1662, 1664
BstKTI	GATC	9 cut(s)	216, 352, 544, 1108, 1341, 1365, 1431, 1516, 1984
BstMAI	GTCTC	3 cut(s)	202, 1388, 1398
BstMBI	GATC	9 cut(s)	213, 349, 541, 1105, 1338, 1362, 1428, 1513, 1981
BstMCI	CGRYCG	1 cut(s)	544
BstMWI	GCNNNNNNNGC	9 cut(s)	364, 518, 1031, 1226, 1627, 1666, 1754, 1787, 1819
BstNSI	RCATGY	4 cut(s)	227, 433, 883, 1852
BstSCI	CCNGG	1 cut(s)	1927
BstSFI	CTRYAG	2 cut(s)	910, 1750
BstSLI	GKGCMC	3 cut(s)	15, 421, 1185
BstUI	CGCG	3 cut(s)	218, 1621, 1662
BstV1I	GCAGC	7 cut(s)	370, 769, 839, 1062, 1587, 1765, 2043
BstV2I	GAAGAC	1 cut(s)	1739
BstZ17I	GTATAC	1 cut(s)	303
BsuRI	GGCC	2 cut(s)	110, 1794
BtgI	CCRYGG	3 cut(s)	958, 1062, 1092
BtsCI	GGATG	5 cut(s)	607, 704, 1378, 1879, 2055
BtsI	GCAGTG	1 cut(s)	15
BtsIMutI	CAGTG	4 cut(s)	15, 39, 717, 937
Cac8I	GCNNGC	3 cut(s)	825, 1662, 1792
CfoI	GCGC	5 cut(s)	48, 514, 1075, 1662, 1664
CseI	GACGC	2 cut(s)	1658, 1727
Csp6I	GTAC	3 cut(s)	708, 1348, 1535
CspCI	CAANNNNNGTGG	2 cut(s)	1979, 2014
CviQI	GTAC	3 cut(s)	708, 1348, 1535
DdeI	CTNAG	4 cut(s)	739, 1101, 1225, 1235
DpnI	GATC	9 cut(s)	215, 351, 543, 1107, 1340, 1364, 1430, 1515, 1983
DpnII	GATC	9 cut(s)	213, 349, 541, 1105, 1338, 1362, 1428, 1513, 1981
DraI	TTTAAA	2 cut(s)	1155, 1711
DraIII	CACNNNGTG	1 cut(s)	1356
EaeI	YGGCCR	1 cut(s)	108
Eam1104I	CTCTTC	5 cut(s)	875, 1386, 1484, 1812, 1998
EarI	CTCTTC	5 cut(s)	875, 1386, 1484, 1812, 1998
Eco130I	CCWWGG	3 cut(s)	958, 1062, 1092
Eco24I	GRGCYC	1 cut(s)	91
Eco31I	GGTCTC	1 cut(s)	1388
Eco47III	AGCGCT	1 cut(s)	1074
Eco57I	CTGAAG	1 cut(s)	963
EcoRI	GAATTC	2 cut(s)	74, 814
EcoT14I	CCWWGG	3 cut(s)	958, 1062, 1092
EcoT22I	ATGCAT	2 cut(s)	891, 1288
EcoT38I	GRGCYC	1 cut(s)	91
ErhI	CCWWGG	3 cut(s)	958, 1062, 1092
FaqI	GGGAC	1 cut(s)	1910
FauI	CCCGC	3 cut(s)	211, 388, 1626
FblI	GTMKAC	2 cut(s)	302, 1647
Fnu4HI	GCNGC	7 cut(s)	359, 783, 828, 1076, 1576, 1779, 2057
FokI	GGATG	5 cut(s)	614, 711, 1385, 1886, 2062
FriOI	GRGCYC	1 cut(s)	91
Fsp4HI	GCNGC	7 cut(s)	359, 783, 828, 1076, 1576, 1779, 2057
FspBI	CTAG	9 cut(s)	824, 854, 1329, 1377, 1511, 1673, 1802, 1808, 1884
FspI	TGCGCA	1 cut(s)	47
GlaI	GCGC	5 cut(s)	47, 513, 1074, 1661, 1663
GluI	GCNGC	7 cut(s)	359, 783, 828, 1076, 1576, 1779, 2057
GsaI	CCCAGC	2 cut(s)	698, 1668
GsuI	CTGGAG	1 cut(s)	1954
HaeII	RGCGCY	1 cut(s)	1076
HaeIII	GGCC	2 cut(s)	110, 1794
HapII	CCGG	2 cut(s)	1814, 1929
HgaI	GACGC	2 cut(s)	1658, 1727
HhaI	GCGC	5 cut(s)	48, 514, 1075, 1662, 1664
Hin1I	GRCGYC	1 cut(s)	1669
Hin6I	GCGC	5 cut(s)	46, 512, 1073, 1660, 1662
HinP1I	GCGC	5 cut(s)	46, 512, 1073, 1660, 1662
HincII	GTYRAC	1 cut(s)	1274
HindII	GTYRAC	1 cut(s)	1274
HindIII	AAGCTT	1 cut(s)	238
HinfI	GANTC	6 cut(s)	290, 476, 1088, 1097, 1137, 1598
HpaII	CCGG	2 cut(s)	1814, 1929
HphI	GGTGA	2 cut(s)	994, 1516
Hpy166II	GTNNAC	8 cut(s)	13, 103, 229, 303, 841, 1274, 1350, 1648
Hpy188I	TCNGA	8 cut(s)	295, 624, 742, 943, 1009, 1249, 1846, 2045
Hpy188III	TCNNGA	5 cut(s)	23, 143, 411, 1673, 1951
Hpy8I	GTNNAC	8 cut(s)	13, 103, 229, 303, 841, 1274, 1350, 1648
Hpy99I	CGWCG	1 cut(s)	1721
HpyAV	CCTTC	1 cut(s)	1489
HpyCH4III	ACNGT	4 cut(s)	34, 196, 712, 914
HpyCH4IV	ACGT	4 cut(s)	99, 490, 1523, 1833
HpyF10VI	GCNNNNNNNGC	9 cut(s)	364, 518, 1031, 1226, 1627, 1666, 1754, 1787, 1819
HpyF3I	CTNAG	4 cut(s)	739, 1101, 1225, 1235
HpySE526I	ACGT	4 cut(s)	99, 490, 1523, 1833
Hsp92I	GRCGYC	1 cut(s)	1669
HspAI	GCGC	5 cut(s)	46, 512, 1073, 1660, 1662
Kzo9I	GATC	9 cut(s)	213, 349, 541, 1105, 1338, 1362, 1428, 1513, 1981
LguI	GCTCTTC	1 cut(s)	1812
LmnI	GCTCC	5 cut(s)	86, 577, 672, 1627, 1991
Lsp1109I	GCAGC	7 cut(s)	370, 769, 839, 1062, 1587, 1765, 2043
LweI	GCATC	6 cut(s)	335, 751, 769, 933, 1153, 1363
MaeI	CTAG	9 cut(s)	824, 854, 1329, 1377, 1511, 1673, 1802, 1808, 1884
MaeII	ACGT	4 cut(s)	99, 490, 1523, 1833
MaeIII	GTNAC	3 cut(s)	658, 791, 805
MalI	GATC	9 cut(s)	215, 351, 543, 1107, 1340, 1364, 1430, 1515, 1983
MboI	GATC	9 cut(s)	213, 349, 541, 1105, 1338, 1362, 1428, 1513, 1981
MhlI	GDGCHC	4 cut(s)	15, 91, 421, 1185
MlyI	GAGTC	1 cut(s)	1106
MmeI	TCCRAC	3 cut(s)	1288, 1869, 1919
Mph1103I	ATGCAT	2 cut(s)	891, 1288
MseI	TTAA	5 cut(s)	321, 381, 1154, 1710, 2065
MslI	CAYNNNNRTG	2 cut(s)	878, 884
MspA1I	CMGCKG	1 cut(s)	1229
MspCI	CTTAAG	1 cut(s)	320
MspI	CCGG	2 cut(s)	1814, 1929
MspR9I	CCNGG	1 cut(s)	1929
Mva1269I	GAATGC	3 cut(s)	43, 367, 514
MvnI	CGCG	3 cut(s)	218, 1621, 1662
MwoI	GCNNNNNNNGC	9 cut(s)	364, 518, 1031, 1226, 1627, 1666, 1754, 1787, 1819
NciI	CCSGG	1 cut(s)	1929
NcoI	CCATGG	3 cut(s)	958, 1062, 1092
NdeII	GATC	9 cut(s)	213, 349, 541, 1105, 1338, 1362, 1428, 1513, 1981
NheI	GCTAGC	1 cut(s)	823
NlaIV	GGNNCC	2 cut(s)	88, 1747
NmeAIII	GCCGAG	1 cut(s)	86
NsbI	TGCGCA	1 cut(s)	47
NsiI	ATGCAT	2 cut(s)	891, 1288
NspI	RCATGY	4 cut(s)	227, 433, 883, 1852
NspV	TTCGAA	2 cut(s)	474, 1086
PauI	GCGCGC	1 cut(s)	1660
PciI	ACATGT	2 cut(s)	429, 1848
PciSI	GCTCTTC	1 cut(s)	1812
PctI	GAATGC	3 cut(s)	43, 367, 514
PfeI	GAWTC	5 cut(s)	290, 476, 1088, 1137, 1598
PkrI	GCNGC	7 cut(s)	360, 784, 829, 1077, 1577, 1780, 2058
Ple19I	CGATCG	1 cut(s)	544
PleI	GAGTC	1 cut(s)	1105
PpsI	GAGTC	1 cut(s)	1105
PscI	ACATGT	2 cut(s)	429, 1848
PsiI	TTATAA	1 cut(s)	683
Psp1406I	AACGTT	1 cut(s)	1523
PspFI	CCCAGC	2 cut(s)	694, 1664
PspN4I	GGNNCC	2 cut(s)	88, 1747
PteI	GCGCGC	1 cut(s)	1660
PvuI	CGATCG	1 cut(s)	544
PvuII	CAGCTG	1 cut(s)	1229
RgaI	GCGATCGC	1 cut(s)	544
RsaI	GTAC	3 cut(s)	709, 1349, 1536
RsaNI	GTAC	3 cut(s)	708, 1348, 1535
RseI	CAYNNNNRTG	2 cut(s)	878, 884
SapI	GCTCTTC	1 cut(s)	1812
SaqAI	TTAA	5 cut(s)	321, 381, 1154, 1710, 2065
SatI	GCNGC	7 cut(s)	359, 783, 828, 1076, 1576, 1779, 2057
Sau3AI	GATC	9 cut(s)	213, 349, 541, 1105, 1338, 1362, 1428, 1513, 1981
ScaI	AGTACT	1 cut(s)	1536
SchI	GAGTC	1 cut(s)	1106
ScrFI	CCNGG	1 cut(s)	1929
SduI	GDGCHC	4 cut(s)	15, 91, 421, 1185
SfaAI	GCGATCGC	1 cut(s)	544
SfaNI	GCATC	6 cut(s)	335, 751, 769, 933, 1153, 1363
SfcI	CTRYAG	2 cut(s)	910, 1750
SfuI	TTCGAA	2 cut(s)	474, 1086
SgfI	GCGATCGC	1 cut(s)	544
SmiMI	CAYNNNNRTG	2 cut(s)	878, 884
SmlI	CTYRAG	2 cut(s)	320, 1043
SmoI	CTYRAG	2 cut(s)	320, 1043
SpeI	ACTAGT	1 cut(s)	853
SsiI	CCGC	4 cut(s)	218, 395, 764, 1619
SspI	AATATT	1 cut(s)	1768
SspMI	CTAG	9 cut(s)	824, 854, 1329, 1377, 1511, 1673, 1802, 1808, 1884
StyD4I	CCNGG	1 cut(s)	1927
StyI	CCWWGG	3 cut(s)	958, 1062, 1092
TaaI	ACNGT	4 cut(s)	34, 196, 712, 914
TaiI	ACGT	4 cut(s)	102, 493, 1526, 1836
TaqI	TCGA	9 cut(s)	56, 343, 474, 642, 752, 876, 1086, 1427, 1473
TatI	WGTACW	3 cut(s)	707, 1347, 1534
TfiI	GAWTC	5 cut(s)	290, 476, 1088, 1137, 1598
Tru1I	TTAA	5 cut(s)	321, 381, 1154, 1710, 2065
Tru9I	TTAA	5 cut(s)	321, 381, 1154, 1710, 2065
TscAI	CASTG	4 cut(s)	15, 39, 717, 937
TseI	GCWGC	7 cut(s)	358, 782, 827, 1075, 1575, 1778, 2056
TspDTI	ATGAA	8 cut(s)	287, 723, 862, 1104, 1173, 1271, 1332, 1505
TspRI	CASTG	4 cut(s)	15, 39, 717, 937
Vha464I	CTTAAG	1 cut(s)	320
VneI	GTGCAC	1 cut(s)	11
XapI	RAATTY	5 cut(s)	74, 814, 1057, 1319, 1580
XbaI	TCTAGA	1 cut(s)	1672
XceI	RCATGY	4 cut(s)	227, 433, 883, 1852
XmiI	GTMKAC	2 cut(s)	302, 1647
XspI	CTAG	9 cut(s)	824, 854, 1329, 1377, 1511, 1673, 1802, 1808, 1884
ZrmI	AGTACT	1 cut(s)	1536
Zsp2I	ATGCAT	2 cut(s)	891, 1288

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.