Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4D

Orthogroup ID

OG0015227

Physical Location & Seq

Genomic Coordinates Forward (+)

16098093 .. 16102220

Gene Structure 4128 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4DG104500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2076 bp

ATGAGGGTATTCCATTCACTTGTGAATGCTTTGCGCAAGGTGTCGATAACCCACTGCAGGGAAATCAAGTTAGGGGCCTTGGCAGACGTTTACTGTGCGAACAATATCCTAAACGGGTACGCGAGATGTCAACACTTGTGCCTTGCCCACCAGGTGTTCGACGAAATGCCCCACAGAGACACCGTGTCTTGGAACACCATTATTGCTGGAAATGTGAACTGCGGGGAGTTCGAGGCGGCGTGGGAGATACTAAGAAGCATGAGAAGATGTGGGTTTGATTTTGATGGGTATACATTTGGAAGCATACTTAAGGGTGTCGCTTGTGCTCTTCGATACGATCTTGGGCAGCAAGTGCATTCCTTGGTTGTTAAGGTAGGTTATGCCAGTAATGTTTATTCTGGAAGTGCTCTTTTGGACATGTACGCGAAATGTGGGAGAGTCGAGGATGCATATGTGGTCTTTGAATCATTGCCGCAACGCAACTCTGTTTCGTGGAATGCACTCATTGCTGGTTACGTGCAAGCAGGTGATCGCAGCACGACGTTTTGGCTATTACATTGTATGGAGCAGGAGGGTATGCAGCTGGAAGATGGCACAATCGCTCCACTTTTGACATTGCTTGATGATGCTGAGTTTTATGAGTCCTTAGTACAGATTCATTGTAAAATTATTAAACATGGGCTGGGATGTGAAAGTACGGTCTGCAATGCCACAATCACTTCCTATTCAGAATGTGGGTCAATAGAAGAGGCCGAAAGAGTGTTTGATGGTTCTTTTGGTAAAAGAGATTTGGTGACATGGAATTCCATGCTAGCAGCGTACTTGGTTCACGGAAAAGAACTGCTTGCTTGCAAACTCTTCTTGGACATGCAAAGGCTTGGGTTTGAACCAGATATCTACAGTTATACTAGCATCATCACTGCTTACTCTGAAGAGGTACACAAGAATCATGGGAGATCCTTTCATGGACTGGTCATAAAAAGGGGACTAGAAAAATCCGGACCAATCTCTAATGCGTTAATTGCTATGTATCTCAAGTCAAGTAACAATTCCTTGGAGGAAGCACTACATATCTTTGAATCCTTGGAGTTTAAGGACCGTGTTTCTTGGAACTCCATTTTGACTGGGTTTTCGCAGAATGGATGGAATGAAGATGCCTTGAGATTATTTGGGCATATGAGATATGGAGAGGTGGAGGTTGATCATTATGCCTTCTCAGCTGTACTTCGGTCTTGCTCAGATTTAGGAACCCTCAACCTGGGTCAACAGGTTCATGCTTTGACACTTAGATCAGGGCTTGAATCCAATGAGTTTGTAGCTAGTTCTTTGATCTCTATGTATTCCAAGTGCGGGATCATTGACGATGCTAGAAAATCGTTTGAAGAGACTCCTAAAGATAGCGCAATCACTTGGAATTCAATAATTTTTGGATATGCACAAAATGGGCAGGGATATGTTGCACTGGACCTCTTCTCCCAAATGAAGAAGGAAAAGGTGAAACTTGATCACATAACATTTGTGGCAATTCTAACTGCTTGTAGCCACGTGGGTTTGGTTGAACAAGGATGCAAGTTTCTAAATTCTATGAAATCTGAATACACAATTGCACCACGAATGGAGCATTATGCTTGTGCAGTAGATCTATATGGGCGCGCTGGGCATCTAGATAAGGCAAAAGCCTTGATTGAAGAAATGCCATTTGAACCTGATGCAATGGTGTGGAAGACTTTACTGGGTGCCTGCAGGGCTTGTGGCAATATTGAATTAGCGAGTCAAGTAGCAGACTATCTGCTAGTGCTAGAGCCTGAAGAGCACTGCACTTATGTTCTTCTTTCTGACATGTATGGACATCTTAAAAGGTGGGATGCTAAAGCTAGTGTAAAGAAGCTTATGAGGGAAAGGGGTGTTAGGAAAGTCCCTGGTTGGAGTTGGATAGAACTCAACAATGAGGTGCATGCATTTAAAGCTGAAGATCATTCACACCCTCAGTGTGAAGAGATATATTTTGTATTGCAAATTCTAATGGAGGAAATCAAAAGGCTGGACATTGTTGCTAATCTAAAACAGTTTGGGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0016070 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DYW_deaminase PPR PPR_2

Protein Analysis

691

Amino Acids

77.7

Weight (kDa)

5.77

Isoelectric Point (pI)

44.48

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PPR_2	PF13041	59 - 107	3.6e-10	PPR repeat family
PPR_2	PF13041	263 - 309	8.4e-12	PPR repeat family
PPR_2	PF13041	366 - 413	3.1e-07	PPR repeat family
PPR_2	PF13041	468 - 514	1.4e-10	PPR repeat family
PPR	PF01535	469 - 498	2.7e-06	PPR repeat
E_motif	PF20431	586 - 646	2.3e-12	E motif

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0015227)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G25970
fragaria_vesca	FvH4_3g28520
malus_domestica	MD15G1043900.v1.1
prunus_persica	Prupe.1G397500_v2.0.a1
pyrus_communis	pycom15g04090
rosa_chinensis	RchiOBHm_Chr4g0402431
rosa_laevigata	RLG00000009084
rosa_multiflora	Rmu_co8477433.1_g000001 Rmu_ssc0000330.1_g000025
rosa_roxburghii	Rroxscaffold_5G00347130
rosa_rugosa	Rorug04G0035300
rosa_samantha	Rh4AG112700 Rh4BG105200 Rh4CG119500 Rh4DG104500
rosa_wichuraiana	Rw4G009030

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	515
Acc16I	TGCGCA	1 cut(s)	35
Acc36I	ACCTGC	1 cut(s)	515
AccB1I	GGYRCC	1 cut(s)	1736
AccI	GTMKAC	1 cut(s)	290
AccII	CGCG	3 cut(s)	122, 425, 1653
AccIII	TCCGGA	1 cut(s)	998
AciI	CCGC	4 cut(s)	222, 236, 473, 1350
AclWI	GGATC	2 cut(s)	951, 1361
AcsI	RAATTY	4 cut(s)	802, 1414, 1579, 2016
AcuI	CTGAAG	3 cut(s)	951, 1827, 1989
AcvI	CACGTG	1 cut(s)	1546
AdeI	CACNNNGTG	1 cut(s)	154
AfaI	GTAC	7 cut(s)	119, 422, 651, 697, 821, 939, 1224
AfiI	CCNNNNNNNGG	5 cut(s)	57, 58, 189, 1258, 1350
AflII	CTTAAG	1 cut(s)	308
AflIII	ACRYGT	2 cut(s)	417, 1839
AhdI	GACNNNNNGTC	1 cut(s)	184
AjnI	CCWGG	3 cut(s)	150, 1257, 1918
AluBI	AGCT	6 cut(s)	583, 1220, 1319, 1874, 1888, 1967
AluI	AGCT	6 cut(s)	583, 1220, 1319, 1874, 1888, 1967
Alw21I	GWGCWC	3 cut(s)	328, 409, 1815
Alw26I	GTCTC	2 cut(s)	171, 1379
AlwI	GGATC	2 cut(s)	951, 1361
Aor13HI	TCCGGA	1 cut(s)	998
AoxI	GGCC	2 cut(s)	75, 750
ApeKI	GCWGC	4 cut(s)	346, 534, 580, 815
ApoI	RAATTY	4 cut(s)	802, 1414, 1579, 2016
ArsI	GACNNNNNNTTYG	2 cut(s)	1114, 1146
AspLEI	GCGC	4 cut(s)	36, 1403, 1653, 1655
AspS9I	GGNCC	4 cut(s)	75, 1001, 1096, 1465
AsuHPI	GGTGA	3 cut(s)	539, 805, 1507
AsuNHI	GCTAGC	1 cut(s)	811
AvaII	GGWCC	3 cut(s)	1001, 1096, 1465
BanI	GGYRCC	1 cut(s)	1736
BbrPI	CACGTG	1 cut(s)	1546
BbsI	GAAGAC	1 cut(s)	1730
Bbv12I	GWGCWC	3 cut(s)	328, 409, 1815
BbvI	GCAGC	4 cut(s)	358, 546, 592, 827
BccI	CCATC	4 cut(s)	278, 584, 761, 1137
BciT130I	CCWGG	3 cut(s)	152, 1259, 1920
BclI	TGATCA	2 cut(s)	1201, 1504
BcoDI	GTCTC	2 cut(s)	171, 1379
BfaI	CTAG	9 cut(s)	812, 909, 989, 1320, 1368, 1664, 1793, 1799, 1875
BfmI	CTRYAG	3 cut(s)	55, 898, 1741
BfrI	CTTAAG	1 cut(s)	308
BfuAI	ACCTGC	1 cut(s)	515
BglI	GCCNNNNNGGC	1 cut(s)	1745
BglII	AGATCT	1 cut(s)	1639
BisI	GCNGC	6 cut(s)	237, 347, 473, 535, 581, 816
BlsI	GCNGC	6 cut(s)	238, 348, 474, 536, 582, 817
Bme1390I	CCNGG	3 cut(s)	152, 1259, 1920
Bme18I	GGWCC	3 cut(s)	1001, 1096, 1465
BmeRI	GACNNNNNGTC	1 cut(s)	184
BmgT120I	GGNCC	4 cut(s)	75, 1001, 1096, 1465
BmiI	GGNNCC	3 cut(s)	76, 1249, 1738
BmrFI	CCNGG	3 cut(s)	152, 1259, 1920
BmrI	ACTGGG	2 cut(s)	1134, 1742
BmsI	GCATC	9 cut(s)	436, 616, 921, 1144, 1354, 1556, 1669, 1699, 1855
BmtI	GCTAGC	1 cut(s)	815
BmuI	ACTGGG	2 cut(s)	1134, 1742
BpiI	GAAGAC	1 cut(s)	1730
BpuEI	CTTGAG	2 cut(s)	1019, 1180
BsaAI	YACGTR	2 cut(s)	517, 1546
BsaJI	CCNNGG	6 cut(s)	78, 360, 1053, 1083, 1258, 1918
BsaWI	WCCGGW	1 cut(s)	998
BsaXI	ACNNNNNCTCC	4 cut(s)	586, 616, 1457, 1487
Bsc4I	CCNNNNNNNGG	5 cut(s)	57, 58, 189, 1258, 1350
Bse1I	ACTGG	5 cut(s)	384, 975, 1129, 1467, 1737
Bse3DI	GCAATG	5 cut(s)	467, 504, 614, 712, 1719
BseAI	TCCGGA	1 cut(s)	998
BseBI	CCWGG	3 cut(s)	152, 1259, 1920
BseDI	CCNNGG	6 cut(s)	78, 360, 1053, 1083, 1258, 1918
BseGI	GGATG	5 cut(s)	451, 692, 1148, 1571, 1870
BseLI	CCNNNNNNNGG	5 cut(s)	57, 58, 189, 1258, 1350
BseMI	GCAATG	5 cut(s)	467, 504, 614, 712, 1719
BseMII	CTCAG	4 cut(s)	621, 1230, 1251, 2000
BseNI	ACTGG	5 cut(s)	384, 975, 1129, 1467, 1737
BsePI	GCGCGC	1 cut(s)	1651
BseXI	GCAGC	4 cut(s)	358, 546, 592, 827
BseYI	CCCAGC	2 cut(s)	682, 1655
BsgI	GTGCAG	2 cut(s)	1653, 1801
Bsh1236I	CGCG	3 cut(s)	122, 425, 1653
BshFI	GGCC	2 cut(s)	77, 752
BshNI	GGYRCC	1 cut(s)	1736
BsiHKAI	GWGCWC	3 cut(s)	328, 409, 1815
BsiSI	CCGG	1 cut(s)	999
BslFI	GGGAC	2 cut(s)	999, 1901
BslI	CCNNNNNNNGG	5 cut(s)	57, 58, 189, 1258, 1350
BsmAI	GTCTC	2 cut(s)	171, 1379
BsmFI	GGGAC	2 cut(s)	999, 1901
BsmI	GAATGC	3 cut(s)	31, 355, 502
BsnI	GGCC	2 cut(s)	77, 752
Bsp1286I	GDGCHC	3 cut(s)	328, 409, 1815
Bsp13I	TCCGGA	1 cut(s)	998
BspACI	CCGC	4 cut(s)	222, 236, 473, 1350
BspANI	GGCC	2 cut(s)	77, 752
BspCNI	CTCAG	4 cut(s)	622, 1229, 1250, 1999
BspEI	TCCGGA	1 cut(s)	998
BspFNI	CGCG	3 cut(s)	122, 425, 1653
BspLI	GGNNCC	3 cut(s)	76, 1249, 1738
BspMAI	CTGCAG	2 cut(s)	59, 1745
BspMI	ACCTGC	1 cut(s)	515
BspOI	GCTAGC	1 cut(s)	815
BspPI	GGATC	2 cut(s)	951, 1361
BspQI	GCTCTTC	2 cut(s)	333, 1803
BspT107I	GGYRCC	1 cut(s)	1736
BspTI	CTTAAG	1 cut(s)	308
BsrDI	GCAATG	5 cut(s)	467, 504, 614, 712, 1719
BsrI	ACTGG	5 cut(s)	384, 975, 1129, 1467, 1737
BssECI	CCNNGG	6 cut(s)	78, 360, 1053, 1083, 1258, 1918
BssHII	GCGCGC	1 cut(s)	1651
BssNAI	GTATAC	1 cut(s)	291
BssT1I	CCWWGG	4 cut(s)	78, 360, 1053, 1083
Bst1107I	GTATAC	1 cut(s)	291
Bst2UI	CCWGG	3 cut(s)	152, 1259, 1920
Bst4CI	ACNGT	6 cut(s)	95, 184, 700, 902, 1100, 2067
Bst6I	CTCTTC	8 cut(s)	333, 741, 863, 927, 1377, 1475, 1803, 1989
BstAFI	CTTAAG	1 cut(s)	308
BstAPI	GCANNNNNTGC	2 cut(s)	352, 506
BstBAI	YACGTR	2 cut(s)	517, 1546
BstC8I	GCNNGC	7 cut(s)	522, 813, 846, 850, 1653, 1741, 1956
BstDEI	CTNAG	7 cut(s)	251, 630, 646, 1216, 1237, 1286, 1986
BstF5I	GGATG	5 cut(s)	451, 692, 1148, 1571, 1870
BstFNI	CGCG	3 cut(s)	122, 425, 1653
BstHHI	GCGC	4 cut(s)	36, 1403, 1653, 1655
BstMAI	GTCTC	2 cut(s)	171, 1379
BstMWI	GCNNNNNNNGC	8 cut(s)	352, 506, 1022, 1217, 1657, 1745, 1810, 1964
BstNI	CCWGG	3 cut(s)	152, 1259, 1920
BstNSI	RCATGY	4 cut(s)	421, 871, 1843, 1958
BstSCI	CCNGG	3 cut(s)	150, 1257, 1918
BstSFI	CTRYAG	3 cut(s)	55, 898, 1741
BstUI	CGCG	3 cut(s)	122, 425, 1653
BstV1I	GCAGC	4 cut(s)	358, 546, 592, 827
BstV2I	GAAGAC	1 cut(s)	1730
BstX2I	RGATCY	2 cut(s)	956, 1639
BstYI	RGATCY	2 cut(s)	956, 1639
BstZ17I	GTATAC	1 cut(s)	291
BsuRI	GGCC	2 cut(s)	77, 752
BtsCI	GGATG	5 cut(s)	451, 692, 1148, 1571, 1870
BtsI	GCAGTG	3 cut(s)	52, 918, 1813
BtsIMutI	CAGTG	5 cut(s)	52, 918, 1460, 1813, 1994
BveI	ACCTGC	1 cut(s)	515
Cac8I	GCNNGC	7 cut(s)	522, 813, 846, 850, 1653, 1741, 1956
CfoI	GCGC	4 cut(s)	36, 1403, 1653, 1655
Cfr13I	GGNCC	4 cut(s)	75, 1001, 1096, 1465
CsiI	ACCWGGT	1 cut(s)	150
Csp6I	GTAC	7 cut(s)	118, 421, 650, 696, 820, 938, 1223
CviQI	GTAC	7 cut(s)	118, 421, 650, 696, 820, 938, 1223
DdeI	CTNAG	7 cut(s)	251, 630, 646, 1216, 1237, 1286, 1986
DraI	TTTAAA	1 cut(s)	1963
DraIII	CACNNNGTG	1 cut(s)	154
DriI	GACNNNNNGTC	1 cut(s)	184
Eam1104I	CTCTTC	8 cut(s)	333, 741, 863, 927, 1377, 1475, 1803, 1989
Eam1105I	GACNNNNNGTC	1 cut(s)	184
EarI	CTCTTC	8 cut(s)	333, 741, 863, 927, 1377, 1475, 1803, 1989
Eco130I	CCWWGG	4 cut(s)	78, 360, 1053, 1083
Eco32I	GATATC	1 cut(s)	895
Eco47I	GGWCC	3 cut(s)	1001, 1096, 1465
Eco57I	CTGAAG	3 cut(s)	951, 1827, 1989
Eco72I	CACGTG	1 cut(s)	1546
EcoO109I	RGGNCCY	1 cut(s)	75
EcoRI	GAATTC	2 cut(s)	802, 1414
EcoRII	CCWGG	3 cut(s)	150, 1257, 1918
EcoRV	GATATC	1 cut(s)	895
EcoT14I	CCWWGG	4 cut(s)	78, 360, 1053, 1083
EcoT22I	ATGCAT	2 cut(s)	451, 1960
ErhI	CCWWGG	4 cut(s)	78, 360, 1053, 1083
FalI	AAGNNNNNCTT	2 cut(s)	828, 860
FaqI	GGGAC	2 cut(s)	999, 1901
FauI	CCCGC	2 cut(s)	215, 1343
FauNDI	CATATG	2 cut(s)	451, 1176
FbaI	TGATCA	2 cut(s)	1201, 1504
FblI	GTMKAC	1 cut(s)	290
Fnu4HI	GCNGC	6 cut(s)	237, 347, 473, 535, 581, 816
FokI	GGATG	5 cut(s)	458, 699, 1155, 1578, 1877
Fsp4HI	GCNGC	6 cut(s)	237, 347, 473, 535, 581, 816
FspBI	CTAG	9 cut(s)	812, 909, 989, 1320, 1368, 1664, 1793, 1799, 1875
FspI	TGCGCA	1 cut(s)	35
GlaI	GCGC	4 cut(s)	35, 1402, 1652, 1654
GluI	GCNGC	6 cut(s)	237, 347, 473, 535, 581, 816
GsaI	CCCAGC	2 cut(s)	686, 1659
HaeIII	GGCC	2 cut(s)	77, 752
HapII	CCGG	1 cut(s)	999
HhaI	GCGC	4 cut(s)	36, 1403, 1653, 1655
Hin6I	GCGC	4 cut(s)	34, 1401, 1651, 1653
HinP1I	GCGC	4 cut(s)	34, 1401, 1651, 1653
HincII	GTYRAC	2 cut(s)	131, 1265
HindII	GTYRAC	2 cut(s)	131, 1265
HindIII	AAGCTT	1 cut(s)	1886
HinfI	GANTC	9 cut(s)	438, 464, 641, 655, 946, 1079, 1301, 1387, 1771
HpaII	CCGG	1 cut(s)	999
HphI	GGTGA	3 cut(s)	539, 805, 1507
Hpy166II	GTNNAC	7 cut(s)	91, 131, 217, 291, 829, 940, 1265
Hpy188I	TCNGA	5 cut(s)	730, 931, 1240, 1594, 1837
Hpy188III	TCNNGA	3 cut(s)	399, 999, 1664
Hpy8I	GTNNAC	7 cut(s)	91, 131, 217, 291, 829, 940, 1265
Hpy99I	CGWCG	2 cut(s)	164, 544
HpyAV	CCTTC	2 cut(s)	1222, 1480
HpyCH4III	ACNGT	6 cut(s)	95, 184, 700, 902, 1100, 2067
HpyCH4IV	ACGT	4 cut(s)	87, 516, 542, 1545
HpyF10VI	GCNNNNNNNGC	8 cut(s)	352, 506, 1022, 1217, 1657, 1745, 1810, 1964
HpyF3I	CTNAG	7 cut(s)	251, 630, 646, 1216, 1237, 1286, 1986
HpySE526I	ACGT	4 cut(s)	87, 516, 542, 1545
HspAI	GCGC	4 cut(s)	34, 1401, 1651, 1653
Kpn2I	TCCGGA	1 cut(s)	998
Ksp22I	TGATCA	2 cut(s)	1201, 1504
LguI	GCTCTTC	2 cut(s)	333, 1803
LmnI	GCTCC	3 cut(s)	565, 607, 1618
Lsp1109I	GCAGC	4 cut(s)	358, 546, 592, 827
LweI	GCATC	9 cut(s)	436, 616, 921, 1144, 1354, 1556, 1669, 1699, 1855
MabI	ACCWGGT	1 cut(s)	150
MaeI	CTAG	9 cut(s)	812, 909, 989, 1320, 1368, 1664, 1793, 1799, 1875
MaeII	ACGT	4 cut(s)	87, 516, 542, 1545
MaeIII	GTNAC	3 cut(s)	512, 793, 1043
MfeI	CAATTG	1 cut(s)	1602
MflI	RGATCY	2 cut(s)	956, 1639
MhlI	GDGCHC	3 cut(s)	328, 409, 1815
MlyI	GAGTC	4 cut(s)	447, 650, 1381, 1780
MmeI	TCCRAC	2 cut(s)	1904, 1910
Mph1103I	ATGCAT	2 cut(s)	451, 1960
MroI	TCCGGA	1 cut(s)	998
MseI	TTAA	7 cut(s)	309, 369, 672, 1019, 1092, 1854, 1962
MspA1I	CMGCKG	2 cut(s)	583, 1220
MspCI	CTTAAG	1 cut(s)	308
MspI	CCGG	1 cut(s)	999
MspR9I	CCNGG	3 cut(s)	152, 1259, 1920
MunI	CAATTG	1 cut(s)	1602
Mva1269I	GAATGC	3 cut(s)	31, 355, 502
MvaI	CCWGG	3 cut(s)	152, 1259, 1920
MvnI	CGCG	3 cut(s)	122, 425, 1653
MwoI	GCNNNNNNNGC	8 cut(s)	352, 506, 1022, 1217, 1657, 1745, 1810, 1964
NdeI	CATATG	2 cut(s)	451, 1176
NheI	GCTAGC	1 cut(s)	811
NlaIV	GGNNCC	3 cut(s)	76, 1249, 1738
NmuCI	GTSAC	1 cut(s)	793
NsbI	TGCGCA	1 cut(s)	35
NsiI	ATGCAT	2 cut(s)	451, 1960
NspI	RCATGY	4 cut(s)	421, 871, 1843, 1958
PaeI	GCATGC	1 cut(s)	1958
PaqCI	CACCTGC	1 cut(s)	515
PauI	GCGCGC	1 cut(s)	1651
PciI	ACATGT	2 cut(s)	417, 1839
PciSI	GCTCTTC	2 cut(s)	333, 1803
PctI	GAATGC	3 cut(s)	31, 355, 502
PfeI	GAWTC	5 cut(s)	464, 655, 946, 1079, 1301
PkrI	GCNGC	6 cut(s)	238, 348, 474, 536, 582, 817
PleI	GAGTC	4 cut(s)	446, 649, 1381, 1779
PmaCI	CACGTG	1 cut(s)	1546
PmlI	CACGTG	1 cut(s)	1546
PpsI	GAGTC	4 cut(s)	446, 649, 1381, 1779
Ppu21I	YACGTR	2 cut(s)	517, 1546
PscI	ACATGT	2 cut(s)	417, 1839
Psp6I	CCWGG	3 cut(s)	150, 1257, 1918
PspCI	CACGTG	1 cut(s)	1546
PspFI	CCCAGC	2 cut(s)	682, 1655
PspGI	CCWGG	3 cut(s)	150, 1257, 1918
PspN4I	GGNNCC	3 cut(s)	76, 1249, 1738
PspPI	GGNCC	4 cut(s)	75, 1001, 1096, 1465
PstI	CTGCAG	2 cut(s)	59, 1745
PsuI	RGATCY	2 cut(s)	956, 1639
PteI	GCGCGC	1 cut(s)	1651
PvuII	CAGCTG	2 cut(s)	583, 1220
RsaI	GTAC	7 cut(s)	119, 422, 651, 697, 821, 939, 1224
RsaNI	GTAC	7 cut(s)	118, 421, 650, 696, 820, 938, 1223
SapI	GCTCTTC	2 cut(s)	333, 1803
SaqAI	TTAA	7 cut(s)	309, 369, 672, 1019, 1092, 1854, 1962
SatI	GCNGC	6 cut(s)	237, 347, 473, 535, 581, 816
Sau96I	GGNCC	4 cut(s)	75, 1001, 1096, 1465
SbfI	CCTGCAGG	1 cut(s)	1745
SchI	GAGTC	4 cut(s)	447, 650, 1381, 1780
ScrFI	CCNGG	3 cut(s)	152, 1259, 1920
SdaI	CCTGCAGG	1 cut(s)	1745
SduI	GDGCHC	3 cut(s)	328, 409, 1815
SexAI	ACCWGGT	1 cut(s)	150
SfaNI	GCATC	9 cut(s)	436, 616, 921, 1144, 1354, 1556, 1669, 1699, 1855
SfcI	CTRYAG	3 cut(s)	55, 898, 1741
SinI	GGWCC	3 cut(s)	1001, 1096, 1465
SmlI	CTYRAG	3 cut(s)	308, 1034, 1159
SmoI	CTYRAG	3 cut(s)	308, 1034, 1159
SphI	GCATGC	1 cut(s)	1958
Sse8387I	CCTGCAGG	1 cut(s)	1745
SsiI	CCGC	4 cut(s)	222, 236, 473, 1350
SspI	AATATT	1 cut(s)	1759
SspMI	CTAG	9 cut(s)	812, 909, 989, 1320, 1368, 1664, 1793, 1799, 1875
StyD4I	CCNGG	3 cut(s)	150, 1257, 1918
StyI	CCWWGG	4 cut(s)	78, 360, 1053, 1083
TaaI	ACNGT	6 cut(s)	95, 184, 700, 902, 1100, 2067
TaiI	ACGT	4 cut(s)	90, 519, 545, 1548
TaqI	TCGA	5 cut(s)	44, 159, 231, 331, 441
TaqII	GACCGA	1 cut(s)	1218
TatI	WGTACW	2 cut(s)	649, 1222
TauI	GCSGC	2 cut(s)	239, 475
TfiI	GAWTC	5 cut(s)	464, 655, 946, 1079, 1301
Tru1I	TTAA	7 cut(s)	309, 369, 672, 1019, 1092, 1854, 1962
Tru9I	TTAA	7 cut(s)	309, 369, 672, 1019, 1092, 1854, 1962
TscAI	CASTG	5 cut(s)	59, 925, 1467, 1820, 1994
TseFI	GTSAC	1 cut(s)	793
TseI	GCWGC	4 cut(s)	346, 534, 580, 815
Tsp45I	GTSAC	1 cut(s)	793
TspDTI	ATGAA	6 cut(s)	647, 953, 1164, 1262, 1496, 1601
TspGWI	ACGGA	1 cut(s)	846
TspRI	CASTG	5 cut(s)	59, 925, 1467, 1820, 1994
Vha464I	CTTAAG	1 cut(s)	308
VpaK11BI	GGWCC	3 cut(s)	1001, 1096, 1465
XapI	RAATTY	4 cut(s)	802, 1414, 1579, 2016
XbaI	TCTAGA	1 cut(s)	1663
XceI	RCATGY	4 cut(s)	421, 871, 1843, 1958
XmiI	GTMKAC	1 cut(s)	290
XspI	CTAG	9 cut(s)	812, 909, 989, 1320, 1368, 1664, 1793, 1799, 1875
Zsp2I	ATGCAT	2 cut(s)	451, 1960

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.