Pentatricopeptide repeat-containing protein
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| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT3G25970 |
| fragaria_vesca | FvH4_3g28520 |
| malus_domestica | MD15G1043900.v1.1 |
| prunus_persica | Prupe.1G397500_v2.0.a1 |
| pyrus_communis | pycom15g04090 |
| rosa_chinensis | RchiOBHm_Chr4g0402431 |
| rosa_laevigata | RLG00000009084 |
| rosa_multiflora | Rmu_co8477433.1_g000001 Rmu_ssc0000330.1_g000025 |
| rosa_roxburghii | Rroxscaffold_5G00347130 |
| rosa_rugosa | Rorug04G0035300 |
| rosa_samantha | Rh4AG112700 Rh4BG105200 Rh4CG119500 Rh4DG104500 |
| rosa_wichuraiana | Rw4G009030 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AarI | CACCTGC | 1 cut(s) | 515 |
| Acc16I | TGCGCA | 1 cut(s) | 35 |
| Acc36I | ACCTGC | 1 cut(s) | 515 |
| AccI | GTMKAC | 1 cut(s) | 290 |
| AccII | CGCG | 2 cut(s) | 122, 239 |
| AccIII | TCCGGA | 1 cut(s) | 998 |
| AciI | CCGC | 4 cut(s) | 222, 237, 473, 1350 |
| AclWI | GGATC | 3 cut(s) | 649, 951, 1361 |
| AcsI | RAATTY | 1 cut(s) | 802 |
| AcuI | CTGAAG | 1 cut(s) | 951 |
| AdeI | CACNNNGTG | 1 cut(s) | 154 |
| AfaI | GTAC | 7 cut(s) | 119, 422, 651, 697, 821, 939, 1224 |
| AfiI | CCNNNNNNNGG | 5 cut(s) | 57, 58, 189, 1258, 1350 |
| AflII | CTTAAG | 1 cut(s) | 308 |
| AflIII | ACRYGT | 1 cut(s) | 417 |
| AgeI | ACCGGT | 1 cut(s) | 114 |
| AgsI | TTSAA | 4 cut(s) | 464, 887, 1079, 1301 |
| AhdI | GACNNNNNGTC | 1 cut(s) | 184 |
| AjnI | CCWGG | 1 cut(s) | 1257 |
| AluBI | AGCT | 3 cut(s) | 247, 1220, 1319 |
| AluI | AGCT | 3 cut(s) | 247, 1220, 1319 |
| Alw21I | GWGCWC | 2 cut(s) | 328, 409 |
| Alw26I | GTCTC | 2 cut(s) | 46, 171 |
| AlwI | GGATC | 3 cut(s) | 649, 951, 1361 |
| Aor13HI | TCCGGA | 1 cut(s) | 998 |
| AoxI | GGCC | 2 cut(s) | 234, 750 |
| ApeKI | GCWGC | 4 cut(s) | 346, 534, 580, 815 |
| ApoI | RAATTY | 1 cut(s) | 802 |
| ArsI | GACNNNNNNTTYG | 2 cut(s) | 1114, 1146 |
| AsiGI | ACCGGT | 1 cut(s) | 114 |
| AspLEI | GCGC | 1 cut(s) | 36 |
| AspS9I | GGNCC | 2 cut(s) | 1001, 1096 |
| AsuC2I | CCSGG | 1 cut(s) | 152 |
| AsuHPI | GGTGA | 2 cut(s) | 539, 805 |
| AsuNHI | GCTAGC | 1 cut(s) | 811 |
| AvaII | GGWCC | 2 cut(s) | 1001, 1096 |
| Bbv12I | GWGCWC | 2 cut(s) | 328, 409 |
| BbvI | GCAGC | 4 cut(s) | 358, 546, 567, 827 |
| BccI | CCATC | 3 cut(s) | 278, 584, 761 |
| BceAI | ACGGC | 1 cut(s) | 555 |
| BciT130I | CCWGG | 1 cut(s) | 1259 |
| BclI | TGATCA | 1 cut(s) | 1201 |
| BcnI | CCSGG | 1 cut(s) | 152 |
| BcoDI | GTCTC | 2 cut(s) | 46, 171 |
| BfaI | CTAG | 5 cut(s) | 812, 909, 989, 1320, 1368 |
| BfmI | CTRYAG | 2 cut(s) | 55, 898 |
| BfrI | CTTAAG | 1 cut(s) | 308 |
| BfuAI | ACCTGC | 1 cut(s) | 515 |
| BisI | GCNGC | 6 cut(s) | 237, 347, 473, 535, 581, 816 |
| BlsI | GCNGC | 6 cut(s) | 238, 348, 474, 536, 582, 817 |
| BmcAI | AGTACT | 1 cut(s) | 697 |
| Bme1390I | CCNGG | 2 cut(s) | 152, 1259 |
| Bme18I | GGWCC | 2 cut(s) | 1001, 1096 |
| BmeRI | GACNNNNNGTC | 1 cut(s) | 184 |
| BmgT120I | GGNCC | 2 cut(s) | 1001, 1096 |
| BmiI | GGNNCC | 2 cut(s) | 76, 1249 |
| BmrFI | CCNGG | 2 cut(s) | 152, 1259 |
| BmrI | ACTGGG | 1 cut(s) | 1134 |
| BmsI | GCATC | 5 cut(s) | 436, 616, 921, 1144, 1354 |
| BmtI | GCTAGC | 1 cut(s) | 815 |
| BmuI | ACTGGG | 1 cut(s) | 1134 |
| Bpu10I | CCTNAGC | 1 cut(s) | 369 |
| BpuEI | CTTGAG | 2 cut(s) | 1019, 1180 |
| BpuMI | CCSGG | 1 cut(s) | 152 |
| BsaAI | YACGTR | 1 cut(s) | 517 |
| BsaI | GGTCTC | 1 cut(s) | 46 |
| BsaJI | CCNNGG | 6 cut(s) | 78, 360, 645, 1053, 1083, 1258 |
| BsaWI | WCCGGW | 2 cut(s) | 114, 998 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 586, 616 |
| Bsc4I | CCNNNNNNNGG | 5 cut(s) | 57, 58, 189, 1258, 1350 |
| Bse118I | RCCGGY | 1 cut(s) | 114 |
| Bse1I | ACTGG | 3 cut(s) | 384, 975, 1129 |
| Bse3DI | GCAATG | 4 cut(s) | 467, 504, 614, 712 |
| BseAI | TCCGGA | 1 cut(s) | 998 |
| BseBI | CCWGG | 1 cut(s) | 1259 |
| BseDI | CCNNGG | 6 cut(s) | 78, 360, 645, 1053, 1083, 1258 |
| BseGI | GGATG | 2 cut(s) | 451, 692 |
| BseLI | CCNNNNNNNGG | 5 cut(s) | 57, 58, 189, 1258, 1350 |
| BseMI | GCAATG | 4 cut(s) | 467, 504, 614, 712 |
| BseMII | CTCAG | 3 cut(s) | 621, 1230, 1251 |
| BseNI | ACTGG | 3 cut(s) | 384, 975, 1129 |
| BseXI | GCAGC | 4 cut(s) | 358, 546, 567, 827 |
| BseYI | CCCAGC | 1 cut(s) | 682 |
| Bsh1236I | CGCG | 2 cut(s) | 122, 239 |
| BshFI | GGCC | 2 cut(s) | 236, 752 |
| BshTI | ACCGGT | 1 cut(s) | 114 |
| BsiHKAI | GWGCWC | 2 cut(s) | 328, 409 |
| BsiSI | CCGG | 3 cut(s) | 115, 151, 999 |
| BslFI | GGGAC | 1 cut(s) | 999 |
| BslI | CCNNNNNNNGG | 5 cut(s) | 57, 58, 189, 1258, 1350 |
| BsmAI | GTCTC | 2 cut(s) | 46, 171 |
| BsmFI | GGGAC | 1 cut(s) | 999 |
| BsmI | GAATGC | 3 cut(s) | 31, 355, 502 |
| BsnI | GGCC | 2 cut(s) | 236, 752 |
| Bso31I | GGTCTC | 1 cut(s) | 46 |
| Bsp1286I | GDGCHC | 2 cut(s) | 328, 409 |
| Bsp13I | TCCGGA | 1 cut(s) | 998 |
| Bsp143I | GATC | 8 cut(s) | 337, 529, 654, 956, 1201, 1289, 1329, 1353 |
| BspACI | CCGC | 4 cut(s) | 222, 237, 473, 1350 |
| BspANI | GGCC | 2 cut(s) | 236, 752 |
| BspCNI | CTCAG | 3 cut(s) | 622, 1229, 1250 |
| BspEI | TCCGGA | 1 cut(s) | 998 |
| BspFNI | CGCG | 2 cut(s) | 122, 239 |
| BspLI | GGNNCC | 2 cut(s) | 76, 1249 |
| BspMAI | CTGCAG | 1 cut(s) | 59 |
| BspMI | ACCTGC | 1 cut(s) | 515 |
| BspOI | GCTAGC | 1 cut(s) | 815 |
| BspPI | GGATC | 3 cut(s) | 649, 951, 1361 |
| BspQI | GCTCTTC | 1 cut(s) | 333 |
| BspTI | CTTAAG | 1 cut(s) | 308 |
| BspTNI | GGTCTC | 1 cut(s) | 46 |
| BsrDI | GCAATG | 4 cut(s) | 467, 504, 614, 712 |
| BsrFI | RCCGGY | 1 cut(s) | 114 |
| BsrI | ACTGG | 3 cut(s) | 384, 975, 1129 |
| BssAI | RCCGGY | 1 cut(s) | 114 |
| BssECI | CCNNGG | 6 cut(s) | 78, 360, 645, 1053, 1083, 1258 |
| BssMI | GATC | 8 cut(s) | 337, 529, 654, 956, 1201, 1289, 1329, 1353 |
| BssNAI | GTATAC | 1 cut(s) | 291 |
| BssT1I | CCWWGG | 5 cut(s) | 78, 360, 645, 1053, 1083 |
| Bst1107I | GTATAC | 1 cut(s) | 291 |
| Bst2UI | CCWGG | 1 cut(s) | 1259 |
| Bst4CI | ACNGT | 5 cut(s) | 95, 184, 700, 902, 1100 |
| Bst6I | CTCTTC | 4 cut(s) | 333, 741, 863, 927 |
| BstAFI | CTTAAG | 1 cut(s) | 308 |
| BstAPI | GCANNNNNTGC | 2 cut(s) | 352, 506 |
| BstBAI | YACGTR | 1 cut(s) | 517 |
| BstC8I | GCNNGC | 3 cut(s) | 522, 813, 850 |
| BstDEI | CTNAG | 6 cut(s) | 251, 369, 630, 1216, 1237, 1286 |
| BstF5I | GGATG | 2 cut(s) | 451, 692 |
| BstFNI | CGCG | 2 cut(s) | 122, 239 |
| BstHHI | GCGC | 1 cut(s) | 36 |
| BstKTI | GATC | 8 cut(s) | 340, 532, 657, 959, 1204, 1292, 1332, 1356 |
| BstMAI | GTCTC | 2 cut(s) | 46, 171 |
| BstMBI | GATC | 8 cut(s) | 337, 529, 654, 956, 1201, 1289, 1329, 1353 |
| BstMWI | GCNNNNNNNGC | 4 cut(s) | 352, 506, 1022, 1217 |
| BstNI | CCWGG | 1 cut(s) | 1259 |
| BstNSI | RCATGY | 2 cut(s) | 421, 871 |
| BstSCI | CCNGG | 2 cut(s) | 150, 1257 |
| BstSFI | CTRYAG | 2 cut(s) | 55, 898 |
| BstUI | CGCG | 2 cut(s) | 122, 239 |
| BstV1I | GCAGC | 4 cut(s) | 358, 546, 567, 827 |
| BstX2I | RGATCY | 2 cut(s) | 654, 956 |
| BstYI | RGATCY | 2 cut(s) | 654, 956 |
| BstZ17I | GTATAC | 1 cut(s) | 291 |
| BsuRI | GGCC | 2 cut(s) | 236, 752 |
| BtsCI | GGATG | 2 cut(s) | 451, 692 |
| BtsI | GCAGTG | 2 cut(s) | 52, 918 |
| BtsIMutI | CAGTG | 2 cut(s) | 52, 918 |
| BveI | ACCTGC | 1 cut(s) | 515 |
| Cac8I | GCNNGC | 3 cut(s) | 522, 813, 850 |
| CfoI | GCGC | 1 cut(s) | 36 |
| Cfr10I | RCCGGY | 1 cut(s) | 114 |
| Cfr13I | GGNCC | 2 cut(s) | 1001, 1096 |
| Csp6I | GTAC | 7 cut(s) | 118, 421, 650, 696, 820, 938, 1223 |
| CspAI | ACCGGT | 1 cut(s) | 114 |
| CviQI | GTAC | 7 cut(s) | 118, 421, 650, 696, 820, 938, 1223 |
| DdeI | CTNAG | 6 cut(s) | 251, 369, 630, 1216, 1237, 1286 |
| DpnI | GATC | 8 cut(s) | 339, 531, 656, 958, 1203, 1291, 1331, 1355 |
| DpnII | GATC | 8 cut(s) | 337, 529, 654, 956, 1201, 1289, 1329, 1353 |
| DraIII | CACNNNGTG | 1 cut(s) | 154 |
| DriI | GACNNNNNGTC | 1 cut(s) | 184 |
| Eam1104I | CTCTTC | 4 cut(s) | 333, 741, 863, 927 |
| Eam1105I | GACNNNNNGTC | 1 cut(s) | 184 |
| EarI | CTCTTC | 4 cut(s) | 333, 741, 863, 927 |
| Eco130I | CCWWGG | 5 cut(s) | 78, 360, 645, 1053, 1083 |
| Eco31I | GGTCTC | 1 cut(s) | 46 |
| Eco32I | GATATC | 1 cut(s) | 895 |
| Eco47I | GGWCC | 2 cut(s) | 1001, 1096 |
| Eco57I | CTGAAG | 1 cut(s) | 951 |
| EcoRI | GAATTC | 1 cut(s) | 802 |
| EcoRII | CCWGG | 1 cut(s) | 1257 |
| EcoRV | GATATC | 1 cut(s) | 895 |
| EcoT14I | CCWWGG | 5 cut(s) | 78, 360, 645, 1053, 1083 |
| EcoT22I | ATGCAT | 1 cut(s) | 451 |
| ErhI | CCWWGG | 5 cut(s) | 78, 360, 645, 1053, 1083 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 828, 860 |
| FaqI | GGGAC | 1 cut(s) | 999 |
| FauI | CCCGC | 2 cut(s) | 215, 1343 |
| FauNDI | CATATG | 2 cut(s) | 451, 1176 |
| FbaI | TGATCA | 1 cut(s) | 1201 |
| FblI | GTMKAC | 1 cut(s) | 290 |
| Fnu4HI | GCNGC | 6 cut(s) | 237, 347, 473, 535, 581, 816 |
| FokI | GGATG | 2 cut(s) | 458, 699 |
| Fsp4HI | GCNGC | 6 cut(s) | 237, 347, 473, 535, 581, 816 |
| FspBI | CTAG | 5 cut(s) | 812, 909, 989, 1320, 1368 |
| FspI | TGCGCA | 1 cut(s) | 35 |
| GlaI | GCGC | 1 cut(s) | 35 |
| GluI | GCNGC | 6 cut(s) | 237, 347, 473, 535, 581, 816 |
| GsaI | CCCAGC | 1 cut(s) | 686 |
| HaeIII | GGCC | 2 cut(s) | 236, 752 |
| HapII | CCGG | 3 cut(s) | 115, 151, 999 |
| HhaI | GCGC | 1 cut(s) | 36 |
| Hin6I | GCGC | 1 cut(s) | 34 |
| HinP1I | GCGC | 1 cut(s) | 34 |
| HincII | GTYRAC | 2 cut(s) | 131, 1265 |
| HindII | GTYRAC | 2 cut(s) | 131, 1265 |
| HinfI | GANTC | 6 cut(s) | 438, 464, 641, 946, 1079, 1301 |
| HpaII | CCGG | 3 cut(s) | 115, 151, 999 |
| HphI | GGTGA | 2 cut(s) | 539, 805 |
| Hpy166II | GTNNAC | 7 cut(s) | 91, 131, 217, 291, 829, 940, 1265 |
| Hpy188I | TCNGA | 3 cut(s) | 730, 931, 1240 |
| Hpy188III | TCNNGA | 3 cut(s) | 43, 399, 999 |
| Hpy8I | GTNNAC | 7 cut(s) | 91, 131, 217, 291, 829, 940, 1265 |
| Hpy99I | CGWCG | 1 cut(s) | 164 |
| HpyAV | CCTTC | 1 cut(s) | 1222 |
| HpyCH4III | ACNGT | 5 cut(s) | 95, 184, 700, 902, 1100 |
| HpyCH4IV | ACGT | 2 cut(s) | 87, 516 |
| HpyCH4V | TGCA | 9 cut(s) | 57, 355, 449, 500, 520, 556, 705, 852, 871 |
| HpyF10VI | GCNNNNNNNGC | 4 cut(s) | 352, 506, 1022, 1217 |
| HpyF3I | CTNAG | 6 cut(s) | 251, 369, 630, 1216, 1237, 1286 |
| HpySE526I | ACGT | 2 cut(s) | 87, 516 |
| HspAI | GCGC | 1 cut(s) | 34 |
| Kpn2I | TCCGGA | 1 cut(s) | 998 |
| Ksp22I | TGATCA | 1 cut(s) | 1201 |
| Kzo9I | GATC | 8 cut(s) | 337, 529, 654, 956, 1201, 1289, 1329, 1353 |
| LguI | GCTCTTC | 1 cut(s) | 333 |
| LmnI | GCTCC | 4 cut(s) | 74, 244, 565, 607 |
| Lsp1109I | GCAGC | 4 cut(s) | 358, 546, 567, 827 |
| LweI | GCATC | 5 cut(s) | 436, 616, 921, 1144, 1354 |
| MaeI | CTAG | 5 cut(s) | 812, 909, 989, 1320, 1368 |
| MaeII | ACGT | 2 cut(s) | 87, 516 |
| MaeIII | GTNAC | 3 cut(s) | 512, 793, 1043 |
| MalI | GATC | 8 cut(s) | 339, 531, 656, 958, 1203, 1291, 1331, 1355 |
| MboI | GATC | 8 cut(s) | 337, 529, 654, 956, 1201, 1289, 1329, 1353 |
| MboII | GAAGA | 7 cut(s) | 276, 320, 599, 758, 850, 944, 1163 |
| MfeI | CAATTG | 1 cut(s) | 597 |
| MflI | RGATCY | 2 cut(s) | 654, 956 |
| MhlI | GDGCHC | 2 cut(s) | 328, 409 |
| MluCI | AATT | 5 cut(s) | 597, 666, 802, 1020, 1048 |
| MlyI | GAGTC | 2 cut(s) | 447, 650 |
| MnlI | CCTC | 9 cut(s) | 226, 436, 565, 742, 928, 1051, 1183, 1189, 1262 |
| Mph1103I | ATGCAT | 1 cut(s) | 451 |
| MroI | TCCGGA | 1 cut(s) | 998 |
| MseI | TTAA | 4 cut(s) | 309, 672, 1019, 1092 |
| MspA1I | CMGCKG | 1 cut(s) | 1220 |
| MspCI | CTTAAG | 1 cut(s) | 308 |
| MspI | CCGG | 3 cut(s) | 115, 151, 999 |
| MspR9I | CCNGG | 2 cut(s) | 152, 1259 |
| MunI | CAATTG | 1 cut(s) | 597 |
| Mva1269I | GAATGC | 3 cut(s) | 31, 355, 502 |
| MvaI | CCWGG | 1 cut(s) | 1259 |
| MvnI | CGCG | 2 cut(s) | 122, 239 |
| MwoI | GCNNNNNNNGC | 4 cut(s) | 352, 506, 1022, 1217 |
| NciI | CCSGG | 1 cut(s) | 152 |
| NdeI | CATATG | 2 cut(s) | 451, 1176 |
| NdeII | GATC | 8 cut(s) | 337, 529, 654, 956, 1201, 1289, 1329, 1353 |
| NheI | GCTAGC | 1 cut(s) | 811 |
| NlaIV | GGNNCC | 2 cut(s) | 76, 1249 |
| NmuCI | GTSAC | 1 cut(s) | 793 |
| NsbI | TGCGCA | 1 cut(s) | 35 |
| NsiI | ATGCAT | 1 cut(s) | 451 |
| NspI | RCATGY | 2 cut(s) | 421, 871 |
| PaqCI | CACCTGC | 1 cut(s) | 515 |
| PciI | ACATGT | 1 cut(s) | 417 |
| PciSI | GCTCTTC | 1 cut(s) | 333 |
| PctI | GAATGC | 3 cut(s) | 31, 355, 502 |
| PfeI | GAWTC | 4 cut(s) | 464, 946, 1079, 1301 |
| PinAI | ACCGGT | 1 cut(s) | 114 |
| PkrI | GCNGC | 6 cut(s) | 238, 348, 474, 536, 582, 817 |
| PleI | GAGTC | 2 cut(s) | 446, 649 |
| PpsI | GAGTC | 2 cut(s) | 446, 649 |
| Ppu21I | YACGTR | 1 cut(s) | 517 |
| PscI | ACATGT | 1 cut(s) | 417 |
| Psp6I | CCWGG | 1 cut(s) | 1257 |
| PspFI | CCCAGC | 1 cut(s) | 682 |
| PspGI | CCWGG | 1 cut(s) | 1257 |
| PspN4I | GGNNCC | 2 cut(s) | 76, 1249 |
| PspPI | GGNCC | 2 cut(s) | 1001, 1096 |
| PstI | CTGCAG | 1 cut(s) | 59 |
| PsuI | RGATCY | 2 cut(s) | 654, 956 |
| PvuII | CAGCTG | 1 cut(s) | 1220 |
| RsaI | GTAC | 7 cut(s) | 119, 422, 651, 697, 821, 939, 1224 |
| RsaNI | GTAC | 7 cut(s) | 118, 421, 650, 696, 820, 938, 1223 |
| SapI | GCTCTTC | 1 cut(s) | 333 |
| SaqAI | TTAA | 4 cut(s) | 309, 672, 1019, 1092 |
| SatI | GCNGC | 6 cut(s) | 237, 347, 473, 535, 581, 816 |
| Sau3AI | GATC | 8 cut(s) | 337, 529, 654, 956, 1201, 1289, 1329, 1353 |
| Sau96I | GGNCC | 2 cut(s) | 1001, 1096 |
| ScaI | AGTACT | 1 cut(s) | 697 |
| SchI | GAGTC | 2 cut(s) | 447, 650 |
| ScrFI | CCNGG | 2 cut(s) | 152, 1259 |
| SduI | GDGCHC | 2 cut(s) | 328, 409 |
| SfaNI | GCATC | 5 cut(s) | 436, 616, 921, 1144, 1354 |
| SfcI | CTRYAG | 2 cut(s) | 55, 898 |
| SinI | GGWCC | 2 cut(s) | 1001, 1096 |
| SmlI | CTYRAG | 3 cut(s) | 308, 1034, 1159 |
| SmoI | CTYRAG | 3 cut(s) | 308, 1034, 1159 |
| Sse9I | AATT | 5 cut(s) | 597, 666, 802, 1020, 1048 |
| SsiI | CCGC | 4 cut(s) | 222, 237, 473, 1350 |
| SspMI | CTAG | 5 cut(s) | 812, 909, 989, 1320, 1368 |
| StyD4I | CCNGG | 2 cut(s) | 150, 1257 |
| StyI | CCWWGG | 5 cut(s) | 78, 360, 645, 1053, 1083 |
| TaaI | ACNGT | 5 cut(s) | 95, 184, 700, 902, 1100 |
| TaiI | ACGT | 2 cut(s) | 90, 519 |
| TaqI | TCGA | 5 cut(s) | 44, 159, 231, 331, 441 |
| TaqII | GACCGA | 1 cut(s) | 1218 |
| TasI | AATT | 5 cut(s) | 597, 666, 802, 1020, 1048 |
| TatI | WGTACW | 2 cut(s) | 695, 1222 |
| TauI | GCSGC | 2 cut(s) | 239, 475 |
| TfiI | GAWTC | 4 cut(s) | 464, 946, 1079, 1301 |
| Tru1I | TTAA | 4 cut(s) | 309, 672, 1019, 1092 |
| Tru9I | TTAA | 4 cut(s) | 309, 672, 1019, 1092 |
| TscAI | CASTG | 2 cut(s) | 59, 925 |
| TseFI | GTSAC | 1 cut(s) | 793 |
| TseI | GCWGC | 4 cut(s) | 346, 534, 580, 815 |
| Tsp45I | GTSAC | 1 cut(s) | 793 |
| TspDTI | ATGAA | 3 cut(s) | 953, 1164, 1262 |
| TspGWI | ACGGA | 1 cut(s) | 846 |
| TspRI | CASTG | 2 cut(s) | 59, 925 |
| Vha464I | CTTAAG | 1 cut(s) | 308 |
| VpaK11BI | GGWCC | 2 cut(s) | 1001, 1096 |
| XapI | RAATTY | 1 cut(s) | 802 |
| XceI | RCATGY | 2 cut(s) | 421, 871 |
| XmiI | GTMKAC | 1 cut(s) | 290 |
| XspI | CTAG | 5 cut(s) | 812, 909, 989, 1320, 1368 |
| ZrmI | AGTACT | 1 cut(s) | 697 |
| Zsp2I | ATGCAT | 1 cut(s) | 451 |