Rmu_co8477433.1_g000001

Pentatricopeptide repeat-containing protein

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_co8477433.1
Physical Location & Seq
Forward (+)
773 .. 2148
1376 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_co8477433.1_g000001.1.cds

Sequence Viewer

Length: 1376 bp
atgagggtattccattcacttgtgaatgctttgcgcaaggtctcgataacccactgcagggaaatcaagttaggagccttggcagacgtttactgtgcgaacaatatcctaaaccggtacgcgagatgtcaacacctgtgccttgcccaccgggtgttcgacgaaatgccccacagagacaccgtgtcttggaacacgattattgctggaaatgtgaactgcggggagttcgaggccgcgtgggagctactaagaagcatgagaagatgtgggtttgattttgatgggtatacatttggaagcatacttaagggtgtcgcttgtgctcttcgatacgatcttgggcagcaagtgcattccttggttgctaaggtaggttatgccagtaatgtttattctggaagtgctcttttggacatgtacgcaaaatgtgggagagtcgaggatgcatatgtggtctttgaatcattgccgcaacgcaactctgtttcgtggaatgcactcattgctggttacgtgcaagcaggtgatcgcagcacggcgttttggctattgcattgtatggagcaggagggtatgctgctggaagatggcacaattgctccacttttgacattgcttgatgatgctgagttttatgagtccttggtacagatccattgtaaaattattaaacatgggctgggatgtgaaagtactgtctgcaatgccacaatcacttcctattcagaatgtgggtcaatagaagaggccgaaagagtgtttgatggttcttttggtaaaagagatttggtgacatggaattccatgctagcagcgtacttggttcacggaaaagaacaacttgcttgcaaactcttcttggacatgcaaaggcttgggtttgaaccagatatctacagttatactagcatcatcactgcttactctgaagaggtacacaagaatcatgggagatcctttcatggactggtcataaaaaggggactagaaatatccggaccaatctctaatgcgttaattgctatgtatctcaagtcatgtaacaattccttggaggaagcactacatatctttgaatccttggagtttaaggaccgtgtttcttggaactccattttgactgggttttcgcagaatgggtggaatgaagatgccttgagattatttgggcatatgagatatggagaggtggaggttgatcattatgccttctcagctgtacttcggtcttgctcagatttaggaaccctcaacctgggtcaacaggttcatgctttgacacttagatcagggcttgaatccaatgagtttgtagctagttctttgatctctatgtattccaagtgcgggatcattgacgatgctagaaaatc

Protein Analysis

459

Amino Acids

51.33

Weight (kDa)

5.79

Isoelectric Point (pI)

40.86

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0015227)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G25970
fragaria_vesca FvH4_3g28520
malus_domestica MD15G1043900.v1.1
prunus_persica Prupe.1G397500_v2.0.a1
pyrus_communis pycom15g04090
rosa_chinensis RchiOBHm_Chr4g0402431
rosa_laevigata RLG00000009084
rosa_multiflora Rmu_co8477433.1_g000001 Rmu_ssc0000330.1_g000025
rosa_roxburghii Rroxscaffold_5G00347130
rosa_rugosa Rorug04G0035300
rosa_samantha Rh4AG112700 Rh4BG105200 Rh4CG119500 Rh4DG104500
rosa_wichuraiana Rw4G009030

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 515
Acc16I TGCGCA 1 cut(s) 35
Acc36I ACCTGC 1 cut(s) 515
AccI GTMKAC 1 cut(s) 290
AccII CGCG 2 cut(s) 122, 239
AccIII TCCGGA 1 cut(s) 998
AciI CCGC 4 cut(s) 222, 237, 473, 1350
AclWI GGATC 3 cut(s) 649, 951, 1361
AcsI RAATTY 1 cut(s) 802
AcuI CTGAAG 1 cut(s) 951
AdeI CACNNNGTG 1 cut(s) 154
AfaI GTAC 7 cut(s) 119, 422, 651, 697, 821, 939, 1224
AfiI CCNNNNNNNGG 5 cut(s) 57, 58, 189, 1258, 1350
AflII CTTAAG 1 cut(s) 308
AflIII ACRYGT 1 cut(s) 417
AgeI ACCGGT 1 cut(s) 114
AgsI TTSAA 4 cut(s) 464, 887, 1079, 1301
AhdI GACNNNNNGTC 1 cut(s) 184
AjnI CCWGG 1 cut(s) 1257
AluBI AGCT 3 cut(s) 247, 1220, 1319
AluI AGCT 3 cut(s) 247, 1220, 1319
Alw21I GWGCWC 2 cut(s) 328, 409
Alw26I GTCTC 2 cut(s) 46, 171
AlwI GGATC 3 cut(s) 649, 951, 1361
Aor13HI TCCGGA 1 cut(s) 998
AoxI GGCC 2 cut(s) 234, 750
ApeKI GCWGC 4 cut(s) 346, 534, 580, 815
ApoI RAATTY 1 cut(s) 802
ArsI GACNNNNNNTTYG 2 cut(s) 1114, 1146
AsiGI ACCGGT 1 cut(s) 114
AspLEI GCGC 1 cut(s) 36
AspS9I GGNCC 2 cut(s) 1001, 1096
AsuC2I CCSGG 1 cut(s) 152
AsuHPI GGTGA 2 cut(s) 539, 805
AsuNHI GCTAGC 1 cut(s) 811
AvaII GGWCC 2 cut(s) 1001, 1096
Bbv12I GWGCWC 2 cut(s) 328, 409
BbvI GCAGC 4 cut(s) 358, 546, 567, 827
BccI CCATC 3 cut(s) 278, 584, 761
BceAI ACGGC 1 cut(s) 555
BciT130I CCWGG 1 cut(s) 1259
BclI TGATCA 1 cut(s) 1201
BcnI CCSGG 1 cut(s) 152
BcoDI GTCTC 2 cut(s) 46, 171
BfaI CTAG 5 cut(s) 812, 909, 989, 1320, 1368
BfmI CTRYAG 2 cut(s) 55, 898
BfrI CTTAAG 1 cut(s) 308
BfuAI ACCTGC 1 cut(s) 515
BisI GCNGC 6 cut(s) 237, 347, 473, 535, 581, 816
BlsI GCNGC 6 cut(s) 238, 348, 474, 536, 582, 817
BmcAI AGTACT 1 cut(s) 697
Bme1390I CCNGG 2 cut(s) 152, 1259
Bme18I GGWCC 2 cut(s) 1001, 1096
BmeRI GACNNNNNGTC 1 cut(s) 184
BmgT120I GGNCC 2 cut(s) 1001, 1096
BmiI GGNNCC 2 cut(s) 76, 1249
BmrFI CCNGG 2 cut(s) 152, 1259
BmrI ACTGGG 1 cut(s) 1134
BmsI GCATC 5 cut(s) 436, 616, 921, 1144, 1354
BmtI GCTAGC 1 cut(s) 815
BmuI ACTGGG 1 cut(s) 1134
Bpu10I CCTNAGC 1 cut(s) 369
BpuEI CTTGAG 2 cut(s) 1019, 1180
BpuMI CCSGG 1 cut(s) 152
BsaAI YACGTR 1 cut(s) 517
BsaI GGTCTC 1 cut(s) 46
BsaJI CCNNGG 6 cut(s) 78, 360, 645, 1053, 1083, 1258
BsaWI WCCGGW 2 cut(s) 114, 998
BsaXI ACNNNNNCTCC 2 cut(s) 586, 616
Bsc4I CCNNNNNNNGG 5 cut(s) 57, 58, 189, 1258, 1350
Bse118I RCCGGY 1 cut(s) 114
Bse1I ACTGG 3 cut(s) 384, 975, 1129
Bse3DI GCAATG 4 cut(s) 467, 504, 614, 712
BseAI TCCGGA 1 cut(s) 998
BseBI CCWGG 1 cut(s) 1259
BseDI CCNNGG 6 cut(s) 78, 360, 645, 1053, 1083, 1258
BseGI GGATG 2 cut(s) 451, 692
BseLI CCNNNNNNNGG 5 cut(s) 57, 58, 189, 1258, 1350
BseMI GCAATG 4 cut(s) 467, 504, 614, 712
BseMII CTCAG 3 cut(s) 621, 1230, 1251
BseNI ACTGG 3 cut(s) 384, 975, 1129
BseXI GCAGC 4 cut(s) 358, 546, 567, 827
BseYI CCCAGC 1 cut(s) 682
Bsh1236I CGCG 2 cut(s) 122, 239
BshFI GGCC 2 cut(s) 236, 752
BshTI ACCGGT 1 cut(s) 114
BsiHKAI GWGCWC 2 cut(s) 328, 409
BsiSI CCGG 3 cut(s) 115, 151, 999
BslFI GGGAC 1 cut(s) 999
BslI CCNNNNNNNGG 5 cut(s) 57, 58, 189, 1258, 1350
BsmAI GTCTC 2 cut(s) 46, 171
BsmFI GGGAC 1 cut(s) 999
BsmI GAATGC 3 cut(s) 31, 355, 502
BsnI GGCC 2 cut(s) 236, 752
Bso31I GGTCTC 1 cut(s) 46
Bsp1286I GDGCHC 2 cut(s) 328, 409
Bsp13I TCCGGA 1 cut(s) 998
Bsp143I GATC 8 cut(s) 337, 529, 654, 956, 1201, 1289, 1329, 1353
BspACI CCGC 4 cut(s) 222, 237, 473, 1350
BspANI GGCC 2 cut(s) 236, 752
BspCNI CTCAG 3 cut(s) 622, 1229, 1250
BspEI TCCGGA 1 cut(s) 998
BspFNI CGCG 2 cut(s) 122, 239
BspLI GGNNCC 2 cut(s) 76, 1249
BspMAI CTGCAG 1 cut(s) 59
BspMI ACCTGC 1 cut(s) 515
BspOI GCTAGC 1 cut(s) 815
BspPI GGATC 3 cut(s) 649, 951, 1361
BspQI GCTCTTC 1 cut(s) 333
BspTI CTTAAG 1 cut(s) 308
BspTNI GGTCTC 1 cut(s) 46
BsrDI GCAATG 4 cut(s) 467, 504, 614, 712
BsrFI RCCGGY 1 cut(s) 114
BsrI ACTGG 3 cut(s) 384, 975, 1129
BssAI RCCGGY 1 cut(s) 114
BssECI CCNNGG 6 cut(s) 78, 360, 645, 1053, 1083, 1258
BssMI GATC 8 cut(s) 337, 529, 654, 956, 1201, 1289, 1329, 1353
BssNAI GTATAC 1 cut(s) 291
BssT1I CCWWGG 5 cut(s) 78, 360, 645, 1053, 1083
Bst1107I GTATAC 1 cut(s) 291
Bst2UI CCWGG 1 cut(s) 1259
Bst4CI ACNGT 5 cut(s) 95, 184, 700, 902, 1100
Bst6I CTCTTC 4 cut(s) 333, 741, 863, 927
BstAFI CTTAAG 1 cut(s) 308
BstAPI GCANNNNNTGC 2 cut(s) 352, 506
BstBAI YACGTR 1 cut(s) 517
BstC8I GCNNGC 3 cut(s) 522, 813, 850
BstDEI CTNAG 6 cut(s) 251, 369, 630, 1216, 1237, 1286
BstF5I GGATG 2 cut(s) 451, 692
BstFNI CGCG 2 cut(s) 122, 239
BstHHI GCGC 1 cut(s) 36
BstKTI GATC 8 cut(s) 340, 532, 657, 959, 1204, 1292, 1332, 1356
BstMAI GTCTC 2 cut(s) 46, 171
BstMBI GATC 8 cut(s) 337, 529, 654, 956, 1201, 1289, 1329, 1353
BstMWI GCNNNNNNNGC 4 cut(s) 352, 506, 1022, 1217
BstNI CCWGG 1 cut(s) 1259
BstNSI RCATGY 2 cut(s) 421, 871
BstSCI CCNGG 2 cut(s) 150, 1257
BstSFI CTRYAG 2 cut(s) 55, 898
BstUI CGCG 2 cut(s) 122, 239
BstV1I GCAGC 4 cut(s) 358, 546, 567, 827
BstX2I RGATCY 2 cut(s) 654, 956
BstYI RGATCY 2 cut(s) 654, 956
BstZ17I GTATAC 1 cut(s) 291
BsuRI GGCC 2 cut(s) 236, 752
BtsCI GGATG 2 cut(s) 451, 692
BtsI GCAGTG 2 cut(s) 52, 918
BtsIMutI CAGTG 2 cut(s) 52, 918
BveI ACCTGC 1 cut(s) 515
Cac8I GCNNGC 3 cut(s) 522, 813, 850
CfoI GCGC 1 cut(s) 36
Cfr10I RCCGGY 1 cut(s) 114
Cfr13I GGNCC 2 cut(s) 1001, 1096
Csp6I GTAC 7 cut(s) 118, 421, 650, 696, 820, 938, 1223
CspAI ACCGGT 1 cut(s) 114
CviQI GTAC 7 cut(s) 118, 421, 650, 696, 820, 938, 1223
DdeI CTNAG 6 cut(s) 251, 369, 630, 1216, 1237, 1286
DpnI GATC 8 cut(s) 339, 531, 656, 958, 1203, 1291, 1331, 1355
DpnII GATC 8 cut(s) 337, 529, 654, 956, 1201, 1289, 1329, 1353
DraIII CACNNNGTG 1 cut(s) 154
DriI GACNNNNNGTC 1 cut(s) 184
Eam1104I CTCTTC 4 cut(s) 333, 741, 863, 927
Eam1105I GACNNNNNGTC 1 cut(s) 184
EarI CTCTTC 4 cut(s) 333, 741, 863, 927
Eco130I CCWWGG 5 cut(s) 78, 360, 645, 1053, 1083
Eco31I GGTCTC 1 cut(s) 46
Eco32I GATATC 1 cut(s) 895
Eco47I GGWCC 2 cut(s) 1001, 1096
Eco57I CTGAAG 1 cut(s) 951
EcoRI GAATTC 1 cut(s) 802
EcoRII CCWGG 1 cut(s) 1257
EcoRV GATATC 1 cut(s) 895
EcoT14I CCWWGG 5 cut(s) 78, 360, 645, 1053, 1083
EcoT22I ATGCAT 1 cut(s) 451
ErhI CCWWGG 5 cut(s) 78, 360, 645, 1053, 1083
FalI AAGNNNNNCTT 2 cut(s) 828, 860
FaqI GGGAC 1 cut(s) 999
FauI CCCGC 2 cut(s) 215, 1343
FauNDI CATATG 2 cut(s) 451, 1176
FbaI TGATCA 1 cut(s) 1201
FblI GTMKAC 1 cut(s) 290
Fnu4HI GCNGC 6 cut(s) 237, 347, 473, 535, 581, 816
FokI GGATG 2 cut(s) 458, 699
Fsp4HI GCNGC 6 cut(s) 237, 347, 473, 535, 581, 816
FspBI CTAG 5 cut(s) 812, 909, 989, 1320, 1368
FspI TGCGCA 1 cut(s) 35
GlaI GCGC 1 cut(s) 35
GluI GCNGC 6 cut(s) 237, 347, 473, 535, 581, 816
GsaI CCCAGC 1 cut(s) 686
HaeIII GGCC 2 cut(s) 236, 752
HapII CCGG 3 cut(s) 115, 151, 999
HhaI GCGC 1 cut(s) 36
Hin6I GCGC 1 cut(s) 34
HinP1I GCGC 1 cut(s) 34
HincII GTYRAC 2 cut(s) 131, 1265
HindII GTYRAC 2 cut(s) 131, 1265
HinfI GANTC 6 cut(s) 438, 464, 641, 946, 1079, 1301
HpaII CCGG 3 cut(s) 115, 151, 999
HphI GGTGA 2 cut(s) 539, 805
Hpy166II GTNNAC 7 cut(s) 91, 131, 217, 291, 829, 940, 1265
Hpy188I TCNGA 3 cut(s) 730, 931, 1240
Hpy188III TCNNGA 3 cut(s) 43, 399, 999
Hpy8I GTNNAC 7 cut(s) 91, 131, 217, 291, 829, 940, 1265
Hpy99I CGWCG 1 cut(s) 164
HpyAV CCTTC 1 cut(s) 1222
HpyCH4III ACNGT 5 cut(s) 95, 184, 700, 902, 1100
HpyCH4IV ACGT 2 cut(s) 87, 516
HpyCH4V TGCA 9 cut(s) 57, 355, 449, 500, 520, 556, 705, 852, 871
HpyF10VI GCNNNNNNNGC 4 cut(s) 352, 506, 1022, 1217
HpyF3I CTNAG 6 cut(s) 251, 369, 630, 1216, 1237, 1286
HpySE526I ACGT 2 cut(s) 87, 516
HspAI GCGC 1 cut(s) 34
Kpn2I TCCGGA 1 cut(s) 998
Ksp22I TGATCA 1 cut(s) 1201
Kzo9I GATC 8 cut(s) 337, 529, 654, 956, 1201, 1289, 1329, 1353
LguI GCTCTTC 1 cut(s) 333
LmnI GCTCC 4 cut(s) 74, 244, 565, 607
Lsp1109I GCAGC 4 cut(s) 358, 546, 567, 827
LweI GCATC 5 cut(s) 436, 616, 921, 1144, 1354
MaeI CTAG 5 cut(s) 812, 909, 989, 1320, 1368
MaeII ACGT 2 cut(s) 87, 516
MaeIII GTNAC 3 cut(s) 512, 793, 1043
MalI GATC 8 cut(s) 339, 531, 656, 958, 1203, 1291, 1331, 1355
MboI GATC 8 cut(s) 337, 529, 654, 956, 1201, 1289, 1329, 1353
MboII GAAGA 7 cut(s) 276, 320, 599, 758, 850, 944, 1163
MfeI CAATTG 1 cut(s) 597
MflI RGATCY 2 cut(s) 654, 956
MhlI GDGCHC 2 cut(s) 328, 409
MluCI AATT 5 cut(s) 597, 666, 802, 1020, 1048
MlyI GAGTC 2 cut(s) 447, 650
MnlI CCTC 9 cut(s) 226, 436, 565, 742, 928, 1051, 1183, 1189, 1262
Mph1103I ATGCAT 1 cut(s) 451
MroI TCCGGA 1 cut(s) 998
MseI TTAA 4 cut(s) 309, 672, 1019, 1092
MspA1I CMGCKG 1 cut(s) 1220
MspCI CTTAAG 1 cut(s) 308
MspI CCGG 3 cut(s) 115, 151, 999
MspR9I CCNGG 2 cut(s) 152, 1259
MunI CAATTG 1 cut(s) 597
Mva1269I GAATGC 3 cut(s) 31, 355, 502
MvaI CCWGG 1 cut(s) 1259
MvnI CGCG 2 cut(s) 122, 239
MwoI GCNNNNNNNGC 4 cut(s) 352, 506, 1022, 1217
NciI CCSGG 1 cut(s) 152
NdeI CATATG 2 cut(s) 451, 1176
NdeII GATC 8 cut(s) 337, 529, 654, 956, 1201, 1289, 1329, 1353
NheI GCTAGC 1 cut(s) 811
NlaIV GGNNCC 2 cut(s) 76, 1249
NmuCI GTSAC 1 cut(s) 793
NsbI TGCGCA 1 cut(s) 35
NsiI ATGCAT 1 cut(s) 451
NspI RCATGY 2 cut(s) 421, 871
PaqCI CACCTGC 1 cut(s) 515
PciI ACATGT 1 cut(s) 417
PciSI GCTCTTC 1 cut(s) 333
PctI GAATGC 3 cut(s) 31, 355, 502
PfeI GAWTC 4 cut(s) 464, 946, 1079, 1301
PinAI ACCGGT 1 cut(s) 114
PkrI GCNGC 6 cut(s) 238, 348, 474, 536, 582, 817
PleI GAGTC 2 cut(s) 446, 649
PpsI GAGTC 2 cut(s) 446, 649
Ppu21I YACGTR 1 cut(s) 517
PscI ACATGT 1 cut(s) 417
Psp6I CCWGG 1 cut(s) 1257
PspFI CCCAGC 1 cut(s) 682
PspGI CCWGG 1 cut(s) 1257
PspN4I GGNNCC 2 cut(s) 76, 1249
PspPI GGNCC 2 cut(s) 1001, 1096
PstI CTGCAG 1 cut(s) 59
PsuI RGATCY 2 cut(s) 654, 956
PvuII CAGCTG 1 cut(s) 1220
RsaI GTAC 7 cut(s) 119, 422, 651, 697, 821, 939, 1224
RsaNI GTAC 7 cut(s) 118, 421, 650, 696, 820, 938, 1223
SapI GCTCTTC 1 cut(s) 333
SaqAI TTAA 4 cut(s) 309, 672, 1019, 1092
SatI GCNGC 6 cut(s) 237, 347, 473, 535, 581, 816
Sau3AI GATC 8 cut(s) 337, 529, 654, 956, 1201, 1289, 1329, 1353
Sau96I GGNCC 2 cut(s) 1001, 1096
ScaI AGTACT 1 cut(s) 697
SchI GAGTC 2 cut(s) 447, 650
ScrFI CCNGG 2 cut(s) 152, 1259
SduI GDGCHC 2 cut(s) 328, 409
SfaNI GCATC 5 cut(s) 436, 616, 921, 1144, 1354
SfcI CTRYAG 2 cut(s) 55, 898
SinI GGWCC 2 cut(s) 1001, 1096
SmlI CTYRAG 3 cut(s) 308, 1034, 1159
SmoI CTYRAG 3 cut(s) 308, 1034, 1159
Sse9I AATT 5 cut(s) 597, 666, 802, 1020, 1048
SsiI CCGC 4 cut(s) 222, 237, 473, 1350
SspMI CTAG 5 cut(s) 812, 909, 989, 1320, 1368
StyD4I CCNGG 2 cut(s) 150, 1257
StyI CCWWGG 5 cut(s) 78, 360, 645, 1053, 1083
TaaI ACNGT 5 cut(s) 95, 184, 700, 902, 1100
TaiI ACGT 2 cut(s) 90, 519
TaqI TCGA 5 cut(s) 44, 159, 231, 331, 441
TaqII GACCGA 1 cut(s) 1218
TasI AATT 5 cut(s) 597, 666, 802, 1020, 1048
TatI WGTACW 2 cut(s) 695, 1222
TauI GCSGC 2 cut(s) 239, 475
TfiI GAWTC 4 cut(s) 464, 946, 1079, 1301
Tru1I TTAA 4 cut(s) 309, 672, 1019, 1092
Tru9I TTAA 4 cut(s) 309, 672, 1019, 1092
TscAI CASTG 2 cut(s) 59, 925
TseFI GTSAC 1 cut(s) 793
TseI GCWGC 4 cut(s) 346, 534, 580, 815
Tsp45I GTSAC 1 cut(s) 793
TspDTI ATGAA 3 cut(s) 953, 1164, 1262
TspGWI ACGGA 1 cut(s) 846
TspRI CASTG 2 cut(s) 59, 925
Vha464I CTTAAG 1 cut(s) 308
VpaK11BI GGWCC 2 cut(s) 1001, 1096
XapI RAATTY 1 cut(s) 802
XceI RCATGY 2 cut(s) 421, 871
XmiI GTMKAC 1 cut(s) 290
XspI CTAG 5 cut(s) 812, 909, 989, 1320, 1368
ZrmI AGTACT 1 cut(s) 697
Zsp2I ATGCAT 1 cut(s) 451
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.