Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000004

Orthogroup ID

OG0015227

Physical Location & Seq

Genomic Coordinates Reverse (-)

5259468 .. 5261606

Gene Structure 2139 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug04G0035300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1284 bp

ATGGCATCACCAAGAACCTCCTTTTTCTCAACGTGGAGGTCGCCATCATCCTCGTCACTGAACCGTAGCACTTCACTTGCATCCCCGGCTACAACTGCACCGGTTCCCTCACCACCCACTTTTGAGACTGGACTGTCGCCATCCACATATGAGCCGACAGTGACACCAGAACCCCAATTTTCACCCATGCCGTTCGATTACGATCAGATCATGGACGACTTTTCACCGGTGAAAATAGTGGACTACCATGAGATGCAAAGAGGCCAAGTGGTCTCTCCATCTCCTTCAAATGAATTAGTTCTCAATGAACCGAAGACACAGCCACAAGAAAATATACAGGAACGACTCGGACAAGTTGTCAAGGGTCTTGTTCAAAAAGAGGTAGATGAGTTGATGAAACAAGCAAAGGCGGACAGTGGCAGAACTAGCGTGGAAGAGACCTCTGAGTTAGCGAAGTACGACGGTAAATTGAAGATAACAGCGGCAGAGAAGGCTGAGGCTGACCATGAGAGCCCTAAAATAACTAACATGGAACCGACCTTCACTACCAGGCCAGGCCGATCGGCCACCAAGCAAGTGGCCCATATTTCCAATGTGTCCTTTCAAATTCCTGATGATCTTAAAGTTGACAATGACACAGTAAACGAGTTTGCTCCTAAGGATGAAGTCCTCAGAGAAATTACTGCTCAGAGTAGGAAAAAGTATAGTTTCTCTGACAGACTCCATGGATGGAAAATGGAGTGTAGGATAAGACTGAATGGTGTCCAACAATTCGATAAGTATTTTACGCATGTAGAATCGAAGATTGTGACAAGATCAGTTCCCGAGGTTGTGAGGTTTATCCTTTATGAGGTGAACCCTAAACAAATGAAGGAAGCCAATAGCAAACGCAAAGGGACAGATATAGGGGAGCCAGCTGATGAGAGACCTAAAAAATTATTAAAGGATGAATACCTAAACAAGTCATTTGAAGGCGCTGCCAGTGATTCTGAAGAAAAGAGGGAATCGTACGATGAGTTGTTTTTTCGTGTAGCCTGGAGTAATCTGATAAACGACGCTGCAGAGAAGGTGCCGTTATTTAGTGAATGGGAAAAATTCAAGGCTGCAAAAAAGAAGGCCAGAACTAAACCATGCGAACCTGAGGTTGGTACACCCAACTTGGATATTGAAGCTCTAGAGACAGCAAACGCCTTGATGGGCCTAGCTGAGGATGAAAGTTTGGTTACGAGAAAGTCGAAGGCTTGTAATGATAGGTCTGGTTTTGGTGTTTTTATCAGGAAATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0016070 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DYW_deaminase PPR PPR_2

Protein Analysis

427

Amino Acids

48.07

Weight (kDa)

5.7

Isoelectric Point (pI)

51.93

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0015227)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G25970
fragaria_vesca	FvH4_3g28520
malus_domestica	MD15G1043900.v1.1
prunus_persica	Prupe.1G397500_v2.0.a1
pyrus_communis	pycom15g04090
rosa_chinensis	RchiOBHm_Chr4g0402431
rosa_laevigata	RLG00000009084
rosa_multiflora	Rmu_co8477433.1_g000001 Rmu_ssc0000330.1_g000025
rosa_roxburghii	Rroxscaffold_5G00347130
rosa_rugosa	Rorug04G0035300
rosa_samantha	Rh4AG112700 Rh4BG105200 Rh4CG119500 Rh4DG104500
rosa_wichuraiana	Rw4G009030

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	133
AccB1I	GGYRCC	1 cut(s)	1069
AciI	CCGC	2 cut(s)	410, 482
AcoI	YGGCCR	1 cut(s)	564
AcsI	RAATTY	2 cut(s)	606, 1094
AcuI	CTGAAG	1 cut(s)	1011
AfaI	GTAC	3 cut(s)	458, 1010, 1150
AfiI	CCNNNNNNNGG	3 cut(s)	850, 1145, 1207
AgeI	ACCGGT	2 cut(s)	100, 226
AgsI	TTSAA	7 cut(s)	288, 374, 472, 605, 971, 1099, 1169
AhdI	GACNNNNNGTC	1 cut(s)	356
AjnI	CCWGG	3 cut(s)	548, 553, 1034
AjuI	GAANNNNNNNTTGG	2 cut(s)	1128, 1160
AluBI	AGCT	3 cut(s)	917, 1172, 1205
AluI	AGCT	3 cut(s)	917, 1172, 1205
Alw26I	GTCTC	5 cut(s)	119, 277, 431, 919, 1172
Ama87I	CYCGRG	1 cut(s)	824
AoxI	GGCC	7 cut(s)	262, 551, 556, 564, 579, 1116, 1198
ApeKI	GCWGC	3 cut(s)	977, 1058, 1103
ApoI	RAATTY	2 cut(s)	606, 1094
AsiGI	ACCGGT	2 cut(s)	100, 226
Asp700I	GAANNNNTTC	1 cut(s)	297
AspLEI	GCGC	1 cut(s)	977
AspS9I	GGNCC	2 cut(s)	580, 1198
AsuC2I	CCSGG	1 cut(s)	86
AsuHPI	GGTGA	5 cut(s)	102, 174, 216, 241, 865
AvaI	CYCGRG	1 cut(s)	824
AxyI	CCTNAGG	2 cut(s)	657, 1140
BanI	GGYRCC	1 cut(s)	1069
BanII	GRGCYC	1 cut(s)	515
BbsI	GAAGAC	1 cut(s)	320
BbvCI	CCTCAGC	2 cut(s)	495, 1206
BbvI	GCAGC	3 cut(s)	964, 1045, 1090
BccI	CCATC	5 cut(s)	52, 148, 286, 723, 1189
BceAI	ACGGC	2 cut(s)	175, 1057
BciT130I	CCWGG	3 cut(s)	550, 555, 1036
BcnI	CCSGG	1 cut(s)	86
BcoDI	GTCTC	5 cut(s)	119, 277, 431, 919, 1172
BfaI	CTAG	3 cut(s)	426, 1175, 1202
BfmI	CTRYAG	1 cut(s)	1059
BfoI	RGCGCY	1 cut(s)	978
BisI	GCNGC	4 cut(s)	483, 978, 1059, 1104
BlsI	GCNGC	4 cut(s)	484, 979, 1060, 1105
Bme1390I	CCNGG	4 cut(s)	86, 550, 555, 1036
BmeRI	GACNNNNNGTC	1 cut(s)	356
BmeT110I	CYCGRG	1 cut(s)	824
BmgT120I	GGNCC	2 cut(s)	580, 1198
BmiI	GGNNCC	4 cut(s)	105, 534, 912, 1071
BmrFI	CCNGG	4 cut(s)	86, 550, 555, 1036
BmsI	GCATC	3 cut(s)	14, 89, 243
BpiI	GAAGAC	1 cut(s)	320
BpmI	CTGGAG	1 cut(s)	1057
Bpu10I	CCTNAGC	2 cut(s)	495, 1206
BpuMI	CCSGG	1 cut(s)	86
BsaBI	GATNNNNATC	1 cut(s)	201
BsaI	GGTCTC	3 cut(s)	277, 431, 919
BsaJI	CCNNGG	3 cut(s)	84, 724, 825
BsaWI	WCCGGW	2 cut(s)	100, 226
Bsc4I	CCNNNNNNNGG	3 cut(s)	850, 1145, 1207
Bse118I	RCCGGY	2 cut(s)	100, 226
Bse1I	ACTGG	2 cut(s)	133, 981
Bse21I	CCTNAGG	2 cut(s)	657, 1140
Bse8I	GATNNNNATC	1 cut(s)	201
BseBI	CCWGG	3 cut(s)	550, 555, 1036
BseDI	CCNNGG	3 cut(s)	84, 724, 825
BseGI	GGATG	7 cut(s)	47, 80, 140, 667, 734, 952, 1216
BseJI	GATNNNNATC	1 cut(s)	201
BseLI	CCNNNNNNNGG	3 cut(s)	850, 1145, 1207
BseMII	CTCAG	6 cut(s)	435, 486, 685, 701, 1131, 1197
BseNI	ACTGG	2 cut(s)	133, 981
BseXI	GCAGC	3 cut(s)	964, 1045, 1090
BsgI	GTGCAG	1 cut(s)	81
Bsh1285I	CGRYCG	1 cut(s)	563
BshFI	GGCC	7 cut(s)	264, 553, 558, 566, 581, 1118, 1200
BshNI	GGYRCC	1 cut(s)	1069
BshTI	ACCGGT	2 cut(s)	100, 226
BsiEI	CGRYCG	1 cut(s)	563
BsiHKCI	CYCGRG	1 cut(s)	824
BsiSI	CCGG	3 cut(s)	86, 101, 227
BsiWI	CGTACG	1 cut(s)	1008
BslFI	GGGAC	1 cut(s)	910
BslI	CCNNNNNNNGG	3 cut(s)	850, 1145, 1207
BsmAI	GTCTC	5 cut(s)	119, 277, 431, 919, 1172
BsmFI	GGGAC	1 cut(s)	910
BsnI	GGCC	7 cut(s)	264, 553, 558, 566, 581, 1118, 1200
Bso31I	GGTCTC	3 cut(s)	277, 431, 919
BsoBI	CYCGRG	1 cut(s)	824
Bsp1286I	GDGCHC	1 cut(s)	515
Bsp143I	GATC	5 cut(s)	202, 207, 560, 616, 815
Bsp19I	CCATGG	1 cut(s)	724
BspACI	CCGC	2 cut(s)	410, 482
BspANI	GGCC	7 cut(s)	264, 553, 558, 566, 581, 1118, 1200
BspCNI	CTCAG	6 cut(s)	436, 487, 684, 700, 1132, 1198
BspLI	GGNNCC	4 cut(s)	105, 534, 912, 1071
BspMAI	CTGCAG	1 cut(s)	1063
BspT107I	GGYRCC	1 cut(s)	1069
BspTNI	GGTCTC	3 cut(s)	277, 431, 919
BsrFI	RCCGGY	2 cut(s)	100, 226
BsrI	ACTGG	2 cut(s)	133, 981
BssAI	RCCGGY	2 cut(s)	100, 226
BssECI	CCNNGG	3 cut(s)	84, 724, 825
BssMI	GATC	5 cut(s)	202, 207, 560, 616, 815
BssT1I	CCWWGG	1 cut(s)	724
Bst2UI	CCWGG	3 cut(s)	550, 555, 1036
Bst4CI	ACNGT	6 cut(s)	65, 135, 160, 416, 464, 640
Bst6I	CTCTTC	1 cut(s)	429
BstC8I	GCNNGC	1 cut(s)	915
BstDEI	CTNAG	7 cut(s)	444, 495, 657, 671, 687, 1140, 1206
BstDSI	CCRYGG	1 cut(s)	724
BstENI	CCTNNNNNAGG	2 cut(s)	848, 1205
BstF5I	GGATG	7 cut(s)	47, 80, 140, 667, 734, 952, 1216
BstH2I	RGCGCY	1 cut(s)	978
BstHHI	GCGC	1 cut(s)	977
BstKTI	GATC	5 cut(s)	205, 210, 563, 619, 818
BstMAI	GTCTC	5 cut(s)	119, 277, 431, 919, 1172
BstMBI	GATC	5 cut(s)	202, 207, 560, 616, 815
BstMCI	CGRYCG	1 cut(s)	563
BstMWI	GCNNNNNNNGC	4 cut(s)	86, 95, 426, 491
BstNI	CCWGG	3 cut(s)	550, 555, 1036
BstNSI	RCATGY	1 cut(s)	794
BstSCI	CCNGG	4 cut(s)	84, 548, 553, 1034
BstSFI	CTRYAG	1 cut(s)	1059
BstV1I	GCAGC	3 cut(s)	964, 1045, 1090
BstV2I	GAAGAC	1 cut(s)	320
BstXI	CCANNNNNNTGG	1 cut(s)	577
Bsu36I	CCTNAGG	2 cut(s)	657, 1140
BsuRI	GGCC	7 cut(s)	264, 553, 558, 566, 581, 1118, 1200
BtgI	CCRYGG	1 cut(s)	724
BtsCI	GGATG	7 cut(s)	47, 80, 140, 667, 734, 952, 1216
BtsIMutI	CAGTG	4 cut(s)	56, 165, 421, 988
Cac8I	GCNNGC	1 cut(s)	915
CfoI	GCGC	1 cut(s)	977
Cfr10I	RCCGGY	2 cut(s)	100, 226
Cfr13I	GGNCC	2 cut(s)	580, 1198
CseI	GACGC	1 cut(s)	1064
Csp6I	GTAC	3 cut(s)	457, 1009, 1149
CspAI	ACCGGT	2 cut(s)	100, 226
CviAII	CATG	8 cut(s)	187, 211, 248, 506, 529, 725, 791, 1131
CviQI	GTAC	3 cut(s)	457, 1009, 1149
DdeI	CTNAG	7 cut(s)	444, 495, 657, 671, 687, 1140, 1206
DpnI	GATC	5 cut(s)	204, 209, 562, 618, 817
DpnII	GATC	5 cut(s)	202, 207, 560, 616, 815
DrdI	GACNNNNNNGTC	1 cut(s)	133
DriI	GACNNNNNGTC	1 cut(s)	356
DseDI	GACNNNNNNGTC	1 cut(s)	133
EaeI	YGGCCR	1 cut(s)	564
Eam1104I	CTCTTC	1 cut(s)	429
Eam1105I	GACNNNNNGTC	1 cut(s)	356
EarI	CTCTTC	1 cut(s)	429
EciI	GGCGGA	1 cut(s)	425
Eco130I	CCWWGG	1 cut(s)	724
Eco24I	GRGCYC	1 cut(s)	515
Eco31I	GGTCTC	3 cut(s)	277, 431, 919
Eco57I	CTGAAG	1 cut(s)	1011
Eco81I	CCTNAGG	2 cut(s)	657, 1140
Eco88I	CYCGRG	1 cut(s)	824
EcoNI	CCTNNNNNAGG	2 cut(s)	848, 1205
EcoRII	CCWGG	3 cut(s)	548, 553, 1034
EcoT14I	CCWWGG	1 cut(s)	724
EcoT38I	GRGCYC	1 cut(s)	515
ErhI	CCWWGG	1 cut(s)	724
FaeI	CATG	8 cut(s)	190, 214, 251, 509, 532, 728, 794, 1134
FaqI	GGGAC	1 cut(s)	910
FatI	CATG	8 cut(s)	186, 210, 247, 505, 528, 724, 790, 1130
FauNDI	CATATG	1 cut(s)	148
Fnu4HI	GCNGC	4 cut(s)	483, 978, 1059, 1104
FokI	GGATG	7 cut(s)	34, 67, 127, 674, 741, 959, 1223
FriOI	GRGCYC	1 cut(s)	515
Fsp4HI	GCNGC	4 cut(s)	483, 978, 1059, 1104
FspBI	CTAG	3 cut(s)	426, 1175, 1202
GlaI	GCGC	1 cut(s)	976
GluI	GCNGC	4 cut(s)	483, 978, 1059, 1104
GsuI	CTGGAG	1 cut(s)	1057
HaeII	RGCGCY	1 cut(s)	978
HaeIII	GGCC	7 cut(s)	264, 553, 558, 566, 581, 1118, 1200
HapII	CCGG	3 cut(s)	86, 101, 227
HgaI	GACGC	1 cut(s)	1064
HhaI	GCGC	1 cut(s)	977
Hin1II	CATG	8 cut(s)	190, 214, 251, 509, 532, 728, 794, 1134
Hin6I	GCGC	1 cut(s)	975
HinP1I	GCGC	1 cut(s)	975
HincII	GTYRAC	1 cut(s)	628
HindII	GTYRAC	1 cut(s)	628
HinfI	GANTC	5 cut(s)	345, 720, 797, 986, 1004
HpaII	CCGG	3 cut(s)	86, 101, 227
HphI	GGTGA	5 cut(s)	102, 174, 216, 241, 865
Hpy166II	GTNNAC	5 cut(s)	241, 628, 643, 856, 1151
Hpy188I	TCNGA	8 cut(s)	207, 350, 445, 674, 690, 715, 991, 1047
Hpy188III	TCNNGA	4 cut(s)	611, 824, 1175, 1276
Hpy8I	GTNNAC	5 cut(s)	241, 628, 643, 856, 1151
Hpy99I	CGWCG	2 cut(s)	464, 1058
HpyAV	CCTTC	8 cut(s)	294, 484, 550, 865, 965, 1060, 1108, 1231
HpyCH4III	ACNGT	6 cut(s)	65, 135, 160, 416, 464, 640
HpyCH4IV	ACGT	1 cut(s)	32
HpyCH4V	TGCA	5 cut(s)	80, 98, 256, 1061, 1106
HpyF10VI	GCNNNNNNNGC	4 cut(s)	86, 95, 426, 491
HpyF3I	CTNAG	7 cut(s)	444, 495, 657, 671, 687, 1140, 1206
HpySE526I	ACGT	1 cut(s)	32
Hsp92II	CATG	8 cut(s)	190, 214, 251, 509, 532, 728, 794, 1134
HspAI	GCGC	1 cut(s)	975
Kzo9I	GATC	5 cut(s)	202, 207, 560, 616, 815
LmnI	GCTCC	2 cut(s)	658, 910
Lsp1109I	GCAGC	3 cut(s)	964, 1045, 1090
LweI	GCATC	3 cut(s)	14, 89, 243
MaeI	CTAG	3 cut(s)	426, 1175, 1202
MaeII	ACGT	1 cut(s)	32
MaeIII	GTNAC	4 cut(s)	54, 160, 808, 1222
MalI	GATC	5 cut(s)	204, 209, 562, 618, 817
MboI	GATC	5 cut(s)	202, 207, 560, 616, 815
MboII	GAAGA	5 cut(s)	325, 446, 484, 814, 1004
MhlI	GDGCHC	1 cut(s)	515
MluCI	AATT	8 cut(s)	176, 293, 467, 606, 678, 770, 935, 1094
MlyI	GAGTC	2 cut(s)	339, 714
MmeI	TCCRAC	1 cut(s)	790
MroXI	GAANNNNTTC	1 cut(s)	297
MseI	TTAA	2 cut(s)	621, 941
MspA1I	CMGCKG	2 cut(s)	482, 917
MspI	CCGG	3 cut(s)	86, 101, 227
MspR9I	CCNGG	4 cut(s)	86, 550, 555, 1036
MvaI	CCWGG	3 cut(s)	550, 555, 1036
MwoI	GCNNNNNNNGC	4 cut(s)	86, 95, 426, 491
NciI	CCSGG	1 cut(s)	86
NcoI	CCATGG	1 cut(s)	724
NdeI	CATATG	1 cut(s)	148
NdeII	GATC	5 cut(s)	202, 207, 560, 616, 815
NlaIII	CATG	8 cut(s)	190, 214, 251, 509, 532, 728, 794, 1134
NlaIV	GGNNCC	4 cut(s)	105, 534, 912, 1071
NmuCI	GTSAC	3 cut(s)	54, 160, 808
NspI	RCATGY	1 cut(s)	794
PcsI	WCGNNNNNNNCGW	1 cut(s)	1232
PdmI	GAANNNNTTC	1 cut(s)	297
PfeI	GAWTC	3 cut(s)	797, 986, 1004
Pfl23II	CGTACG	1 cut(s)	1008
PinAI	ACCGGT	2 cut(s)	100, 226
PkrI	GCNGC	4 cut(s)	484, 979, 1060, 1105
Ple19I	CGATCG	1 cut(s)	563
PleI	GAGTC	2 cut(s)	339, 714
PpsI	GAGTC	2 cut(s)	339, 714
Psp6I	CCWGG	3 cut(s)	548, 553, 1034
PspGI	CCWGG	3 cut(s)	548, 553, 1034
PspLI	CGTACG	1 cut(s)	1008
PspN4I	GGNNCC	4 cut(s)	105, 534, 912, 1071
PspPI	GGNCC	2 cut(s)	580, 1198
PstI	CTGCAG	1 cut(s)	1063
PvuI	CGATCG	1 cut(s)	563
PvuII	CAGCTG	1 cut(s)	917
RsaI	GTAC	3 cut(s)	458, 1010, 1150
RsaNI	GTAC	3 cut(s)	457, 1009, 1149
SaqAI	TTAA	2 cut(s)	621, 941
SatI	GCNGC	4 cut(s)	483, 978, 1059, 1104
Sau3AI	GATC	5 cut(s)	202, 207, 560, 616, 815
Sau96I	GGNCC	2 cut(s)	580, 1198
SchI	GAGTC	2 cut(s)	339, 714
ScrFI	CCNGG	4 cut(s)	86, 550, 555, 1036
SduI	GDGCHC	1 cut(s)	515
SfaNI	GCATC	3 cut(s)	14, 89, 243
SfcI	CTRYAG	1 cut(s)	1059
SgrAI	CRCCGGYG	1 cut(s)	226
Sse9I	AATT	8 cut(s)	176, 293, 467, 606, 678, 770, 935, 1094
SsiI	CCGC	2 cut(s)	410, 482
SspMI	CTAG	3 cut(s)	426, 1175, 1202
StyD4I	CCNGG	4 cut(s)	84, 548, 553, 1034
StyI	CCWWGG	1 cut(s)	724
TaaI	ACNGT	6 cut(s)	65, 135, 160, 416, 464, 640
TaiI	ACGT	1 cut(s)	35
TaqI	TCGA	4 cut(s)	195, 774, 800, 1235
TasI	AATT	8 cut(s)	176, 293, 467, 606, 678, 770, 935, 1094
TauI	GCSGC	1 cut(s)	485
TfiI	GAWTC	3 cut(s)	797, 986, 1004
Tru1I	TTAA	2 cut(s)	621, 941
Tru9I	TTAA	2 cut(s)	621, 941
TscAI	CASTG	4 cut(s)	63, 165, 421, 988
TseFI	GTSAC	3 cut(s)	54, 160, 808
TseI	GCWGC	3 cut(s)	977, 1058, 1103
Tsp45I	GTSAC	3 cut(s)	54, 160, 808
TspDTI	ATGAA	7 cut(s)	306, 321, 410, 678, 884, 963, 1227
TspRI	CASTG	4 cut(s)	63, 165, 421, 988
XagI	CCTNNNNNAGG	2 cut(s)	848, 1205
XapI	RAATTY	2 cut(s)	606, 1094
XbaI	TCTAGA	1 cut(s)	1174
XceI	RCATGY	1 cut(s)	794
XcmI	CCANNNNNNNNNTGG	1 cut(s)	574
XmnI	GAANNNNTTC	1 cut(s)	297
XspI	CTAG	3 cut(s)	426, 1175, 1202

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.