Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr15

Orthogroup ID

OG0017383

Physical Location & Seq

Genomic Coordinates Forward (+)

20626453 .. 20626932

Gene Structure 480 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD15G1248000.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 480 bp

ATGAATGGAAACTGGGGAGCATCGACGAATCTTGGGCACCCGGCTACGTTTGAGACAATAGAGATGGAACCGGGGCTTATGAGAATGATTGTTGAGGAGCTGGATGGGATTGTGAGGAGGGAGTTATACAAGAAGGTGGTCAAGGCTTGGAAAAGAGGCTACTTGTTGTATGGTCCTCCCGGCACTGGAAAATCTAGCTTGATCGGGGCCACAGCGAATTATCTCAAGTTTGATGTGTATGATTTGGAGCTTTCTAGTATGCACATCGACCTTGAATTGAAGAATATCTTGTTGTCTACTAAACATTGTTCGATTTTGGTGGTTGAGGATATTGATTGCAGCATTGATATGCAAAATCAAGAATCGGAGGAACAAACTGAGGAGCCTACCACCAAGCTCACAGTTTCAGGCTTGCTCAATTTCATAGATGGTCACTATATTCGTGAGCAGCTTCAATCCAAGGTCATTCAAACGACGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005740 GO:0005743 GO:0006996 GO:0007005 GO:0008150 GO:0009987 GO:0016020 GO:0016043 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017004 GO:0017062 GO:0017111 GO:0019866 GO:0022607 GO:0031090 GO:0031966 GO:0031967 GO:0031975 GO:0033108 GO:0034551 GO:0034622 GO:0042623 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043933 GO:0044085 GO:0044422 GO:0044424 GO:0044429 GO:0044444 GO:0044446 GO:0044464 GO:0065003 GO:0071840

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

AAA AAA_assoc

Protein Analysis

160

Amino Acids

17.94

Weight (kDa)

4.97

Isoelectric Point (pI)

46.95

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
AAA	PF00004	54 - 148	1.2e-10	ATPase family associated with various cellular activities (AAA)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0017383)

Species	Orthologous Gene IDs
malus_domestica	MD15G1248000.v1.1
prunus_persica	Prupe.8G092600_v2.0.a1
pyrus_communis	pycom15g21780
rosa_chinensis	RchiOBHm_Chr6g0265431
rosa_laevigata	RLG00000014189
rosa_multiflora	Rmu_co8002042.1_g000001 Rmu_ssc0000066.1_g000008
rosa_roxburghii	Rroxscaffold_175G00432400 Rroxscaffold_7G00202660
rosa_rugosa	Rorug06G0017200
rosa_samantha	Rh6BG137800 Rh6DG122100
rosa_wichuraiana	Rw6G011980

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	36
AccI	GTMKAC	1 cut(s)	296
AfiI	CCNNNNNNNGG	1 cut(s)	185
AgsI	TTSAA	4 cut(s)	275, 280, 455, 470
AluBI	AGCT	5 cut(s)	100, 198, 250, 397, 451
AluI	AGCT	5 cut(s)	100, 198, 250, 397, 451
Alw26I	GTCTC	1 cut(s)	47
AoxI	GGCC	1 cut(s)	207
ApeKI	GCWGC	2 cut(s)	339, 448
AspS9I	GGNCC	2 cut(s)	173, 207
AsuC2I	CCSGG	3 cut(s)	41, 72, 180
AvaII	GGWCC	1 cut(s)	173
BaeGI	GKGCMC	1 cut(s)	39
BanI	GGYRCC	1 cut(s)	36
BbvI	GCAGC	2 cut(s)	351, 460
BccI	CCATC	3 cut(s)	58, 98, 422
BcnI	CCSGG	3 cut(s)	41, 72, 180
BcoDI	GTCTC	1 cut(s)	47
BfaI	CTAG	2 cut(s)	195, 255
BisI	GCNGC	2 cut(s)	340, 449
BlsI	GCNGC	2 cut(s)	341, 450
Bme1390I	CCNGG	3 cut(s)	41, 72, 180
Bme18I	GGWCC	1 cut(s)	173
BmgT120I	GGNCC	2 cut(s)	173, 207
BmiI	GGNNCC	4 cut(s)	38, 69, 208, 384
BmrFI	CCNGG	3 cut(s)	41, 72, 180
BmrI	ACTGGG	1 cut(s)	22
BmsI	GCATC	1 cut(s)	29
BmuI	ACTGGG	1 cut(s)	22
BpuEI	CTTGAG	1 cut(s)	209
BpuMI	CCSGG	3 cut(s)	41, 72, 180
BsaJI	CCNNGG	2 cut(s)	71, 459
Bsc4I	CCNNNNNNNGG	1 cut(s)	185
Bse1I	ACTGG	2 cut(s)	17, 190
BseDI	CCNNGG	2 cut(s)	71, 459
BseGI	GGATG	1 cut(s)	109
BseLI	CCNNNNNNNGG	1 cut(s)	185
BseMII	CTCAG	1 cut(s)	369
BseNI	ACTGG	2 cut(s)	17, 190
BseRI	GAGGAG	3 cut(s)	110, 130, 395
BseSI	GKGCMC	1 cut(s)	39
BseXI	GCAGC	2 cut(s)	351, 460
BshFI	GGCC	1 cut(s)	209
BshNI	GGYRCC	1 cut(s)	36
BsiSI	CCGG	3 cut(s)	41, 71, 180
BslI	CCNNNNNNNGG	1 cut(s)	185
BsmAI	GTCTC	1 cut(s)	47
BsnI	GGCC	1 cut(s)	209
Bsp1286I	GDGCHC	1 cut(s)	39
Bsp143I	GATC	1 cut(s)	201
BspANI	GGCC	1 cut(s)	209
BspCNI	CTCAG	1 cut(s)	370
BspLI	GGNNCC	4 cut(s)	38, 69, 208, 384
BspT107I	GGYRCC	1 cut(s)	36
BsrI	ACTGG	2 cut(s)	17, 190
BssECI	CCNNGG	2 cut(s)	71, 459
BssMI	GATC	1 cut(s)	201
BssT1I	CCWWGG	1 cut(s)	459
Bst4CI	ACNGT	1 cut(s)	403
BstC8I	GCNNGC	1 cut(s)	413
BstDEI	CTNAG	1 cut(s)	378
BstF5I	GGATG	1 cut(s)	109
BstKTI	GATC	1 cut(s)	204
BstMAI	GTCTC	1 cut(s)	47
BstMBI	GATC	1 cut(s)	201
BstSCI	CCNGG	3 cut(s)	39, 70, 178
BstSLI	GKGCMC	1 cut(s)	39
BstV1I	GCAGC	2 cut(s)	351, 460
BsuRI	GGCC	1 cut(s)	209
BtsCI	GGATG	1 cut(s)	109
BtsIMutI	CAGTG	1 cut(s)	183
Cac8I	GCNNGC	1 cut(s)	413
Cfr13I	GGNCC	2 cut(s)	173, 207
DdeI	CTNAG	1 cut(s)	378
DpnI	GATC	1 cut(s)	203
DpnII	GATC	1 cut(s)	201
Eco130I	CCWWGG	1 cut(s)	459
Eco47I	GGWCC	1 cut(s)	173
EcoT14I	CCWWGG	1 cut(s)	459
ErhI	CCWWGG	1 cut(s)	459
FaiI	YATR	8 cut(s)	80, 127, 171, 240, 260, 350, 425, 438
FalI	AAGNNNNNCTT	2 cut(s)	272, 304
FblI	GTMKAC	1 cut(s)	296
Fnu4HI	GCNGC	2 cut(s)	340, 449
FokI	GGATG	1 cut(s)	116
Fsp4HI	GCNGC	2 cut(s)	340, 449
FspBI	CTAG	2 cut(s)	195, 255
GluI	GCNGC	2 cut(s)	340, 449
HaeIII	GGCC	1 cut(s)	209
HapII	CCGG	3 cut(s)	41, 71, 180
HinfI	GANTC	2 cut(s)	28, 362
HpaII	CCGG	3 cut(s)	41, 71, 180
Hpy166II	GTNNAC	1 cut(s)	297
Hpy188I	TCNGA	1 cut(s)	367
Hpy188III	TCNNGA	2 cut(s)	359, 443
Hpy8I	GTNNAC	1 cut(s)	297
Hpy99I	CGWCG	2 cut(s)	28, 478
HpyAV	CCTTC	1 cut(s)	127
HpyCH4III	ACNGT	1 cut(s)	403
HpyCH4IV	ACGT	2 cut(s)	47, 476
HpyCH4V	TGCA	3 cut(s)	262, 339, 352
HpyF3I	CTNAG	1 cut(s)	378
HpySE526I	ACGT	2 cut(s)	47, 476
Kzo9I	GATC	1 cut(s)	201
LmnI	GCTCC	4 cut(s)	17, 97, 247, 382
LpnPI	CCDG	6 cut(s)	54, 84, 86, 171, 193, 393
Lsp1109I	GCAGC	2 cut(s)	351, 460
LweI	GCATC	1 cut(s)	29
MaeI	CTAG	2 cut(s)	195, 255
MaeII	ACGT	2 cut(s)	47, 476
MaeIII	GTNAC	1 cut(s)	431
MalI	GATC	1 cut(s)	203
MboI	GATC	1 cut(s)	201
MboII	GAAGA	1 cut(s)	292
MhlI	GDGCHC	1 cut(s)	39
MluCI	AATT	3 cut(s)	217, 275, 418
MnlI	CCTC	8 cut(s)	88, 108, 111, 149, 186, 319, 361, 373
MslI	CAYNNNNRTG	1 cut(s)	347
MspI	CCGG	3 cut(s)	41, 71, 180
MspR9I	CCNGG	3 cut(s)	41, 72, 180
NciI	CCSGG	3 cut(s)	41, 72, 180
NdeII	GATC	1 cut(s)	201
NlaIV	GGNNCC	4 cut(s)	38, 69, 208, 384
NmuCI	GTSAC	1 cut(s)	431
PfeI	GAWTC	2 cut(s)	28, 362
PkrI	GCNGC	2 cut(s)	341, 450
PspN4I	GGNNCC	4 cut(s)	38, 69, 208, 384
PspPI	GGNCC	2 cut(s)	173, 207
RseI	CAYNNNNRTG	1 cut(s)	347
SatI	GCNGC	2 cut(s)	340, 449
Sau3AI	GATC	1 cut(s)	201
Sau96I	GGNCC	2 cut(s)	173, 207
ScrFI	CCNGG	3 cut(s)	41, 72, 180
SduI	GDGCHC	1 cut(s)	39
SfaNI	GCATC	1 cut(s)	29
SinI	GGWCC	1 cut(s)	173
SmiMI	CAYNNNNRTG	1 cut(s)	347
SmlI	CTYRAG	1 cut(s)	224
SmoI	CTYRAG	1 cut(s)	224
Sse9I	AATT	3 cut(s)	217, 275, 418
SspMI	CTAG	2 cut(s)	195, 255
StyD4I	CCNGG	3 cut(s)	39, 70, 178
StyI	CCWWGG	1 cut(s)	459
TaaI	ACNGT	1 cut(s)	403
TaiI	ACGT	2 cut(s)	50, 479
TaqI	TCGA	3 cut(s)	23, 267, 311
TasI	AATT	3 cut(s)	217, 275, 418
TfiI	GAWTC	2 cut(s)	28, 362
TscAI	CASTG	1 cut(s)	190
TseFI	GTSAC	1 cut(s)	431
TseI	GCWGC	2 cut(s)	339, 448
Tsp45I	GTSAC	1 cut(s)	431
TspDTI	ATGAA	2 cut(s)	17, 412
TspRI	CASTG	1 cut(s)	190
VpaK11BI	GGWCC	1 cut(s)	173
XmiI	GTMKAC	1 cut(s)	296
XspI	CTAG	2 cut(s)	195, 255

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.