Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000006

Orthogroup ID

OG0017383

Physical Location & Seq

Genomic Coordinates Forward (+)

2344883 .. 2345593

Gene Structure 711 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug06G0017200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 711 bp

ATGAACAAAATTCTAGTAGTGGGTTATGATGGTGCTACAGGCTGTTTACTATGCTCTGCTAATCTTGAGAACACAACTCACATTTTCTGTAAGTGTCCGACTGCACAGGAAATTTTCATTGCTCCTCCATTAAACCTACAGTCTGTGGCTTTGCCAAACATGATCTTTAAGGAATGGATGCTAGAGAACGCACTTTTACTCAAGCCAGAGATTTTTGAAAAGCTGTTAATGTTAATCTGGTCTCTATGGAAAAACCGGAACACTACACTGTGGGAAAATAATCCAAAGCCGGCATCTATTCTTTTATGTAGCTCCTTAGCCTGGTTGGAAGATTTTCAGAAAGCTAGAGCTACTTCTGCAGCACCGAAGCAAGTGGTAAAGCATCACTGCCAGCCCGCTCATGGAAGCAGAGTGAAGATAAATGTAGATGGTGCATTCTTACCATTGCAGATGTATGAGGGAGCTGGATGTATTGCTCGAGATCCAGCTGGGCAATTCATGGCTGCGTTTGCGTACCATTTACCTCATGTGAACTCAGCTACGCAGACAGAGTTGCTTGCAATCCGAACTGGACTTCAGATGGCAGTCCAATTACAGTTGTCCTCTGTCAGTATAGAATTTGATTGCCTTACTGCTGTCCATGCAATCATGCACCAACAATATACTGATTCTGAGTTTGCAGCCATCATTGCTGACATTCATGACCTTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005740 GO:0005743 GO:0006996 GO:0007005 GO:0008150 GO:0009987 GO:0016020 GO:0016043 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017004 GO:0017062 GO:0017111 GO:0019866 GO:0022607 GO:0031090 GO:0031966 GO:0031967 GO:0031975 GO:0033108 GO:0034551 GO:0034622 GO:0042623 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043933 GO:0044085 GO:0044422 GO:0044424 GO:0044429 GO:0044444 GO:0044446 GO:0044464 GO:0065003 GO:0071840

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

AAA AAA_assoc

Protein Analysis

236

Amino Acids

26.19

Weight (kDa)

6.12

Isoelectric Point (pI)

44.79

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
RVT_3	PF13456	141 - 235	5.8e-14	Reverse transcriptase-like

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0017383)

Species	Orthologous Gene IDs
malus_domestica	MD15G1248000.v1.1
prunus_persica	Prupe.8G092600_v2.0.a1
pyrus_communis	pycom15g21780
rosa_chinensis	RchiOBHm_Chr6g0265431
rosa_laevigata	RLG00000014189
rosa_multiflora	Rmu_co8002042.1_g000001 Rmu_ssc0000066.1_g000008
rosa_roxburghii	Rroxscaffold_175G00432400 Rroxscaffold_7G00202660
rosa_rugosa	Rorug06G0017200
rosa_samantha	Rh6BG137800 Rh6DG122100
rosa_wichuraiana	Rw6G011980

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	398
AciI	CCGC	1 cut(s)	396
AclWI	GGATC	1 cut(s)	476
AcsI	RAATTY	3 cut(s)	9, 111, 617
AcuI	CTGAAG	1 cut(s)	560
AfaI	GTAC	1 cut(s)	515
AfiI	CCNNNNNNNGG	2 cut(s)	321, 401
AgsI	TTSAA	1 cut(s)	218
AjnI	CCWGG	1 cut(s)	320
AluBI	AGCT	7 cut(s)	223, 312, 344, 350, 464, 488, 539
AluI	AGCT	7 cut(s)	223, 312, 344, 350, 464, 488, 539
Alw26I	GTCTC	1 cut(s)	246
AlwI	GGATC	1 cut(s)	476
Ama87I	CYCGRG	1 cut(s)	477
ApeKI	GCWGC	3 cut(s)	359, 503, 680
ApoI	RAATTY	3 cut(s)	9, 111, 617
Asp700I	GAANNNNTTC	1 cut(s)	333
AvaI	CYCGRG	1 cut(s)	477
BbvI	GCAGC	3 cut(s)	371, 490, 692
BccI	CCATC	4 cut(s)	23, 422, 574, 692
BciT130I	CCWGG	1 cut(s)	322
BcoDI	GTCTC	1 cut(s)	246
BfaI	CTAG	3 cut(s)	14, 182, 345
BfmI	CTRYAG	3 cut(s)	36, 137, 357
BisI	GCNGC	3 cut(s)	360, 504, 681
BlsI	GCNGC	3 cut(s)	361, 505, 682
Bme1390I	CCNGG	1 cut(s)	322
BmeT110I	CYCGRG	1 cut(s)	477
BmrFI	CCNGG	1 cut(s)	322
BmsI	GCATC	3 cut(s)	168, 302, 391
Bpu10I	CCTNAGC	1 cut(s)	316
BpuEI	CTTGAG	2 cut(s)	86, 185
BsaI	GGTCTC	1 cut(s)	246
BsaWI	WCCGGW	1 cut(s)	255
Bsc4I	CCNNNNNNNGG	2 cut(s)	321, 401
Bse118I	RCCGGY	1 cut(s)	289
Bse1I	ACTGG	1 cut(s)	574
Bse3DI	GCAATG	3 cut(s)	117, 443, 687
BseBI	CCWGG	1 cut(s)	322
BseGI	GGATG	2 cut(s)	183, 473
BseLI	CCNNNNNNNGG	2 cut(s)	321, 401
BseMI	GCAATG	3 cut(s)	117, 443, 687
BseMII	CTCAG	2 cut(s)	549, 663
BseNI	ACTGG	1 cut(s)	574
BseRI	GAGGAG	1 cut(s)	114
BseXI	GCAGC	3 cut(s)	371, 490, 692
BseYI	CCCAGC	1 cut(s)	488
BsgI	GTGCAG	1 cut(s)	87
BsiHKCI	CYCGRG	1 cut(s)	477
BsiSI	CCGG	2 cut(s)	256, 290
BslI	CCNNNNNNNGG	2 cut(s)	321, 401
BsmAI	GTCTC	1 cut(s)	246
BsmI	GAATGC	1 cut(s)	434
Bso31I	GGTCTC	1 cut(s)	246
BsoBI	CYCGRG	1 cut(s)	477
Bsp143I	GATC	2 cut(s)	162, 481
BspACI	CCGC	1 cut(s)	396
BspCNI	CTCAG	2 cut(s)	548, 664
BspHI	TCATGA	1 cut(s)	700
BspMAI	CTGCAG	1 cut(s)	361
BspPI	GGATC	1 cut(s)	476
BspTNI	GGTCTC	1 cut(s)	246
BsrBI	CCGCTC	1 cut(s)	398
BsrDI	GCAATG	3 cut(s)	117, 443, 687
BsrFI	RCCGGY	1 cut(s)	289
BsrI	ACTGG	1 cut(s)	574
BssAI	RCCGGY	1 cut(s)	289
BssMI	GATC	2 cut(s)	162, 481
Bst2UI	CCWGG	1 cut(s)	322
Bst4CI	ACNGT	3 cut(s)	141, 270, 597
BstC8I	GCNNGC	4 cut(s)	291, 392, 396, 558
BstDEI	CTNAG	3 cut(s)	316, 535, 672
BstF5I	GGATG	2 cut(s)	183, 473
BstKTI	GATC	2 cut(s)	165, 484
BstMAI	GTCTC	1 cut(s)	246
BstMBI	GATC	2 cut(s)	162, 481
BstMWI	GCNNNNNNNGC	4 cut(s)	356, 509, 641, 689
BstNI	CCWGG	1 cut(s)	322
BstSCI	CCNGG	1 cut(s)	320
BstSFI	CTRYAG	3 cut(s)	36, 137, 357
BstV1I	GCAGC	3 cut(s)	371, 490, 692
BstX2I	RGATCY	1 cut(s)	481
BstYI	RGATCY	1 cut(s)	481
BtsCI	GGATG	2 cut(s)	183, 473
BtsI	GCAGTG	1 cut(s)	385
BtsIMutI	CAGTG	2 cut(s)	266, 385
Cac8I	GCNNGC	4 cut(s)	291, 392, 396, 558
CciI	TCATGA	1 cut(s)	700
Cfr10I	RCCGGY	1 cut(s)	289
Csp6I	GTAC	1 cut(s)	514
CviAII	CATG	7 cut(s)	160, 401, 499, 527, 641, 649, 701
CviQI	GTAC	1 cut(s)	514
DdeI	CTNAG	3 cut(s)	316, 535, 672
DpnI	GATC	2 cut(s)	164, 483
DpnII	GATC	2 cut(s)	162, 481
Eco31I	GGTCTC	1 cut(s)	246
Eco57I	CTGAAG	1 cut(s)	560
Eco88I	CYCGRG	1 cut(s)	477
EcoRII	CCWGG	1 cut(s)	320
FaeI	CATG	7 cut(s)	163, 404, 502, 530, 644, 652, 704
FatI	CATG	7 cut(s)	159, 400, 498, 526, 640, 648, 700
FauI	CCCGC	1 cut(s)	403
Fnu4HI	GCNGC	3 cut(s)	360, 504, 681
FokI	GGATG	2 cut(s)	190, 480
Fsp4HI	GCNGC	3 cut(s)	360, 504, 681
FspBI	CTAG	3 cut(s)	14, 182, 345
GluI	GCNGC	3 cut(s)	360, 504, 681
GsaI	CCCAGC	1 cut(s)	492
HapII	CCGG	2 cut(s)	256, 290
Hin1II	CATG	7 cut(s)	163, 404, 502, 530, 644, 652, 704
HinfI	GANTC	1 cut(s)	668
HpaII	CCGG	2 cut(s)	256, 290
Hpy166II	GTNNAC	2 cut(s)	47, 532
Hpy188I	TCNGA	5 cut(s)	99, 339, 566, 579, 673
Hpy188III	TCNNGA	3 cut(s)	65, 479, 701
Hpy8I	GTNNAC	2 cut(s)	47, 532
HpyCH4III	ACNGT	3 cut(s)	141, 270, 597
HpyCH4V	TGCA	8 cut(s)	104, 359, 434, 448, 560, 644, 652, 680
HpyF10VI	GCNNNNNNNGC	4 cut(s)	356, 509, 641, 689
HpyF3I	CTNAG	3 cut(s)	316, 535, 672
Hsp92II	CATG	7 cut(s)	163, 404, 502, 530, 644, 652, 704
KroI	GCCGGC	1 cut(s)	289
KroNI	GCCGGC	1 cut(s)	291
Kzo9I	GATC	2 cut(s)	162, 481
LmnI	GCTCC	3 cut(s)	127, 317, 461
Lsp1109I	GCAGC	3 cut(s)	371, 490, 692
LweI	GCATC	3 cut(s)	168, 302, 391
MaeI	CTAG	3 cut(s)	14, 182, 345
MalI	GATC	2 cut(s)	164, 483
MbiI	CCGCTC	1 cut(s)	398
MboI	GATC	2 cut(s)	162, 481
MboII	GAAGA	2 cut(s)	341, 427
MflI	RGATCY	1 cut(s)	481
MluCI	AATT	5 cut(s)	9, 111, 494, 590, 617
MmeI	TCCRAC	2 cut(s)	122, 306
MnlI	CCTC	4 cut(s)	135, 451, 534, 613
MroNI	GCCGGC	1 cut(s)	289
MroXI	GAANNNNTTC	1 cut(s)	333
MseI	TTAA	4 cut(s)	131, 168, 227, 233
MspA1I	CMGCKG	1 cut(s)	488
MspI	CCGG	2 cut(s)	256, 290
MspR9I	CCNGG	1 cut(s)	322
Mva1269I	GAATGC	1 cut(s)	434
MvaI	CCWGG	1 cut(s)	322
MwoI	GCNNNNNNNGC	4 cut(s)	356, 509, 641, 689
NaeI	GCCGGC	1 cut(s)	291
NdeII	GATC	2 cut(s)	162, 481
NgoMIV	GCCGGC	1 cut(s)	289
NlaIII	CATG	7 cut(s)	163, 404, 502, 530, 644, 652, 704
PaeR7I	CTCGAG	1 cut(s)	477
PagI	TCATGA	1 cut(s)	700
PctI	GAATGC	1 cut(s)	434
PdiI	GCCGGC	1 cut(s)	291
PdmI	GAANNNNTTC	1 cut(s)	333
PfeI	GAWTC	1 cut(s)	668
PkrI	GCNGC	3 cut(s)	361, 505, 682
Psp6I	CCWGG	1 cut(s)	320
PspFI	CCCAGC	1 cut(s)	488
PspGI	CCWGG	1 cut(s)	320
PstI	CTGCAG	1 cut(s)	361
PsuI	RGATCY	1 cut(s)	481
PvuII	CAGCTG	1 cut(s)	488
RsaI	GTAC	1 cut(s)	515
RsaNI	GTAC	1 cut(s)	514
SaqAI	TTAA	4 cut(s)	131, 168, 227, 233
SatI	GCNGC	3 cut(s)	360, 504, 681
Sau3AI	GATC	2 cut(s)	162, 481
ScrFI	CCNGG	1 cut(s)	322
SfaNI	GCATC	3 cut(s)	168, 302, 391
SfcI	CTRYAG	3 cut(s)	36, 137, 357
Sfr274I	CTCGAG	1 cut(s)	477
SlaI	CTCGAG	1 cut(s)	477
SmlI	CTYRAG	3 cut(s)	65, 200, 477
SmoI	CTYRAG	3 cut(s)	65, 200, 477
Sse9I	AATT	5 cut(s)	9, 111, 494, 590, 617
SsiI	CCGC	1 cut(s)	396
SspMI	CTAG	3 cut(s)	14, 182, 345
StyD4I	CCNGG	1 cut(s)	320
TaaI	ACNGT	3 cut(s)	141, 270, 597
TaqI	TCGA	1 cut(s)	478
TasI	AATT	5 cut(s)	9, 111, 494, 590, 617
TfiI	GAWTC	1 cut(s)	668
Tru1I	TTAA	4 cut(s)	131, 168, 227, 233
Tru9I	TTAA	4 cut(s)	131, 168, 227, 233
TscAI	CASTG	2 cut(s)	273, 392
TseI	GCWGC	3 cut(s)	359, 503, 680
TspDTI	ATGAA	4 cut(s)	17, 106, 487, 689
TspRI	CASTG	2 cut(s)	273, 392
XapI	RAATTY	3 cut(s)	9, 111, 617
XcmI	CCANNNNNNNNNTGG	1 cut(s)	398
XhoI	CTCGAG	1 cut(s)	477
XmnI	GAANNNNTTC	1 cut(s)	333
XspI	CTAG	3 cut(s)	14, 182, 345

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.