Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr15

Orthogroup ID

OG0017383

Physical Location & Seq

Genomic Coordinates Forward (+)

15837877 .. 15839089

Gene Structure 1213 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom15g21780.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 753 bp

ATGAATGGAAACTGGGGAGCATGGACGAATCTTGAGCACCCAGCTACGTTTGAGACAATAGCGATGGAACCGGGGCTTATGAGAATGATTGTTGAGGAGCTGGATAGGATTGTGAGGAGGGAGTTTTACAAGGTGGTCAAGGCTTGGAAAAGAGGCTACTTGTTGTATGGTCCTCCCGGCACTGGAAAATCTAGCTTGATCGTGGCCACAGCGAATTATCTCAAGTTTGATGTGTATGATTTGGAGCTTTCTAGTATGCACATGGACCTTGAATTGAAGAATATCTTGTTGTCTACTGAACATCGTTCGATTTTGGTGGTTGAGGATATTGATTGCAGCATTGATATGCAAAATCAAGAATCGGAGGAACAAACTGAGGAGCCTACCACCAAGCTCACACTAGGCTTGCTCAATTTCATAGATGGTCACTATATTCGTGAGCAGGTTGAATCCAGGGTGATTCAAACGACACAATGGCGATGGACCCGAGCACAAGAGAGTGATTGTAGAGGATTTGGAGAGGTTTGTGAGGAGGCGGGAGTTTTATATGAAGGTGGGGAAGGCTTGGAAAAAAGGCTACTTATGGTCCTCCTGGGGTTAATCAAGGGCATAGAGGTCACCTGGGCAGGGGTTGCAGAGGAGCTCATGAAGAGGGATGATGCTGATGTTGCCCTTGGAGGACTTGTCAATTTCCTTAAATGCAAGAGCGTCGAGAATGAAGAAGGAGAGAAGGCGAAAAAGACTAATGTGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005740 GO:0005743 GO:0006996 GO:0007005 GO:0008150 GO:0009987 GO:0016020 GO:0016043 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017004 GO:0017062 GO:0017111 GO:0019866 GO:0022607 GO:0031090 GO:0031966 GO:0031967 GO:0031975 GO:0033108 GO:0034551 GO:0034622 GO:0042623 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043933 GO:0044085 GO:0044422 GO:0044424 GO:0044429 GO:0044444 GO:0044446 GO:0044464 GO:0065003 GO:0071840

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

AAA AAA_assoc

Protein Analysis

251

Amino Acids

28.4

Weight (kDa)

4.81

Isoelectric Point (pI)

37.37

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
AAA	PF00004	53 - 146	1.9e-10	ATPase family associated with various cellular activities (AAA)
AAA_lid_At3g28540	PF25568	199 - 241	6.5e-06	At3g28540-like, AAA+ ATPase lid domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0017383)

Species	Orthologous Gene IDs
malus_domestica	MD15G1248000.v1.1
prunus_persica	Prupe.8G092600_v2.0.a1
pyrus_communis	pycom15g21780
rosa_chinensis	RchiOBHm_Chr6g0265431
rosa_laevigata	RLG00000014189
rosa_multiflora	Rmu_co8002042.1_g000001 Rmu_ssc0000066.1_g000008
rosa_roxburghii	Rroxscaffold_175G00432400 Rroxscaffold_7G00202660
rosa_rugosa	Rorug06G0017200
rosa_samantha	Rh6BG137800 Rh6DG122100
rosa_wichuraiana	Rw6G011980

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	433
AccI	GTMKAC	1 cut(s)	293
AciI	CCGC	1 cut(s)	536
AcoI	YGGCCR	1 cut(s)	204
AfiI	CCNNNNNNNGG	2 cut(s)	182, 627
AgsI	TTSAA	4 cut(s)	272, 277, 449, 464
AjnI	CCWGG	3 cut(s)	452, 591, 620
AluBI	AGCT	6 cut(s)	44, 100, 195, 247, 394, 643
AluI	AGCT	6 cut(s)	44, 100, 195, 247, 394, 643
Alw21I	GWGCWC	3 cut(s)	39, 493, 645
Alw26I	GTCTC	1 cut(s)	47
Ama87I	CYCGRG	1 cut(s)	486
AoxI	GGCC	1 cut(s)	204
ApeKI	GCWGC	1 cut(s)	336
AspS9I	GGNCC	4 cut(s)	170, 265, 483, 586
AsuC2I	CCSGG	2 cut(s)	72, 177
AsuHPI	GGTGA	2 cut(s)	469, 610
AvaI	CYCGRG	1 cut(s)	486
AvaII	GGWCC	4 cut(s)	170, 265, 483, 586
BalI	TGGCCA	1 cut(s)	206
BanII	GRGCYC	1 cut(s)	645
Bbv12I	GWGCWC	3 cut(s)	39, 493, 645
BbvI	GCAGC	1 cut(s)	348
BccI	CCATC	3 cut(s)	58, 416, 474
BcgI	CGANNNNNNTGC	2 cut(s)	691, 725
BciT130I	CCWGG	3 cut(s)	454, 593, 622
BcnI	CCSGG	2 cut(s)	72, 177
BcoDI	GTCTC	1 cut(s)	47
BfaI	CTAG	3 cut(s)	192, 252, 401
BfuAI	ACCTGC	1 cut(s)	433
BisI	GCNGC	1 cut(s)	337
BlsI	GCNGC	1 cut(s)	338
Bme1390I	CCNGG	5 cut(s)	72, 177, 454, 593, 622
Bme18I	GGWCC	4 cut(s)	170, 265, 483, 586
BmeT110I	CYCGRG	1 cut(s)	486
BmgT120I	GGNCC	4 cut(s)	170, 265, 483, 586
BmiI	GGNNCC	3 cut(s)	69, 381, 485
BmrFI	CCNGG	5 cut(s)	72, 177, 454, 593, 622
BmrI	ACTGGG	1 cut(s)	22
BmsI	GCATC	1 cut(s)	649
BmuI	ACTGGG	1 cut(s)	22
BpuEI	CTTGAG	2 cut(s)	53, 206
BpuMI	CCSGG	2 cut(s)	72, 177
BsaJI	CCNNGG	5 cut(s)	71, 453, 592, 621, 673
BsaXI	ACNNNNNCTCC	2 cut(s)	669, 699
Bsc4I	CCNNNNNNNGG	2 cut(s)	182, 627
Bse1I	ACTGG	2 cut(s)	17, 187
BseBI	CCWGG	3 cut(s)	454, 593, 622
BseDI	CCNNGG	5 cut(s)	71, 453, 592, 621, 673
BseGI	GGATG	1 cut(s)	661
BseLI	CCNNNNNNNGG	2 cut(s)	182, 627
BseMII	CTCAG	1 cut(s)	366
BseNI	ACTGG	2 cut(s)	17, 187
BseRI	GAGGAG	5 cut(s)	110, 130, 392, 545, 653
BseXI	GCAGC	1 cut(s)	348
BseYI	CCCAGC	1 cut(s)	40
BshFI	GGCC	1 cut(s)	206
BsiHKAI	GWGCWC	3 cut(s)	39, 493, 645
BsiHKCI	CYCGRG	1 cut(s)	486
BsiSI	CCGG	2 cut(s)	71, 177
BslI	CCNNNNNNNGG	2 cut(s)	182, 627
BsmAI	GTCTC	1 cut(s)	47
BsnI	GGCC	1 cut(s)	206
BsoBI	CYCGRG	1 cut(s)	486
Bsp1286I	GDGCHC	3 cut(s)	39, 493, 645
Bsp143I	GATC	1 cut(s)	198
BspACI	CCGC	1 cut(s)	536
BspANI	GGCC	1 cut(s)	206
BspCNI	CTCAG	1 cut(s)	367
BspHI	TCATGA	1 cut(s)	645
BspLI	GGNNCC	3 cut(s)	69, 381, 485
BspMI	ACCTGC	1 cut(s)	433
BsrI	ACTGG	2 cut(s)	17, 187
BssECI	CCNNGG	5 cut(s)	71, 453, 592, 621, 673
BssMI	GATC	1 cut(s)	198
BssT1I	CCWWGG	1 cut(s)	673
Bst2UI	CCWGG	3 cut(s)	454, 593, 622
Bst6I	CTCTTC	1 cut(s)	644
BstAPI	GCANNNNNTGC	1 cut(s)	632
BstC8I	GCNNGC	1 cut(s)	407
BstDEI	CTNAG	1 cut(s)	375
BstEII	GGTNACC	1 cut(s)	616
BstF5I	GGATG	1 cut(s)	661
BstKTI	GATC	1 cut(s)	201
BstMAI	GTCTC	1 cut(s)	47
BstMBI	GATC	1 cut(s)	198
BstMWI	GCNNNNNNNGC	2 cut(s)	632, 668
BstNI	CCWGG	3 cut(s)	454, 593, 622
BstPI	GGTNACC	1 cut(s)	616
BstSCI	CCNGG	5 cut(s)	70, 175, 452, 591, 620
BstV1I	GCAGC	1 cut(s)	348
BsuRI	GGCC	1 cut(s)	206
BtgZI	GCGATG	2 cut(s)	77, 493
BtsCI	GGATG	1 cut(s)	661
BtsIMutI	CAGTG	1 cut(s)	180
BveI	ACCTGC	1 cut(s)	433
Cac8I	GCNNGC	1 cut(s)	407
CciI	TCATGA	1 cut(s)	645
Cfr13I	GGNCC	4 cut(s)	170, 265, 483, 586
CseI	GACGC	1 cut(s)	697
CviAII	CATG	3 cut(s)	21, 262, 646
DdeI	CTNAG	1 cut(s)	375
DpnI	GATC	1 cut(s)	200
DpnII	GATC	1 cut(s)	198
EaeI	YGGCCR	1 cut(s)	204
Eam1104I	CTCTTC	1 cut(s)	644
EarI	CTCTTC	1 cut(s)	644
Ecl136II	GAGCTC	1 cut(s)	643
Eco130I	CCWWGG	1 cut(s)	673
Eco24I	GRGCYC	1 cut(s)	645
Eco47I	GGWCC	4 cut(s)	170, 265, 483, 586
Eco53kI	GAGCTC	1 cut(s)	643
Eco88I	CYCGRG	1 cut(s)	486
Eco91I	GGTNACC	1 cut(s)	616
EcoICRI	GAGCTC	1 cut(s)	643
EcoO65I	GGTNACC	1 cut(s)	616
EcoRII	CCWGG	3 cut(s)	452, 591, 620
EcoT14I	CCWWGG	1 cut(s)	673
EcoT38I	GRGCYC	1 cut(s)	645
ErhI	CCWWGG	1 cut(s)	673
FaeI	CATG	3 cut(s)	24, 265, 649
FalI	AAGNNNNNCTT	2 cut(s)	269, 301
FatI	CATG	3 cut(s)	20, 261, 645
FauI	CCCGC	1 cut(s)	529
FblI	GTMKAC	1 cut(s)	293
Fnu4HI	GCNGC	1 cut(s)	337
FokI	GGATG	1 cut(s)	668
FriOI	GRGCYC	1 cut(s)	645
Fsp4HI	GCNGC	1 cut(s)	337
FspBI	CTAG	3 cut(s)	192, 252, 401
GluI	GCNGC	1 cut(s)	337
GsaI	CCCAGC	1 cut(s)	44
HaeIII	GGCC	1 cut(s)	206
HapII	CCGG	2 cut(s)	71, 177
HgaI	GACGC	1 cut(s)	697
Hin1II	CATG	3 cut(s)	24, 265, 649
HinfI	GANTC	4 cut(s)	28, 359, 449, 460
HpaII	CCGG	2 cut(s)	71, 177
HphI	GGTGA	2 cut(s)	469, 610
Hpy166II	GTNNAC	1 cut(s)	294
Hpy188I	TCNGA	1 cut(s)	364
Hpy188III	TCNNGA	5 cut(s)	32, 356, 437, 646, 712
Hpy8I	GTNNAC	1 cut(s)	294
Hpy99I	CGWCG	1 cut(s)	713
HpyAV	CCTTC	4 cut(s)	545, 554, 716, 724
HpyCH4IV	ACGT	1 cut(s)	47
HpyCH4V	TGCA	5 cut(s)	259, 336, 349, 635, 702
HpyF10VI	GCNNNNNNNGC	2 cut(s)	632, 668
HpyF3I	CTNAG	1 cut(s)	375
HpySE526I	ACGT	1 cut(s)	47
Hsp92II	CATG	3 cut(s)	24, 265, 649
Kzo9I	GATC	1 cut(s)	198
LmnI	GCTCC	5 cut(s)	17, 97, 244, 379, 640
Lsp1109I	GCAGC	1 cut(s)	348
LweI	GCATC	1 cut(s)	649
MaeI	CTAG	3 cut(s)	192, 252, 401
MaeII	ACGT	1 cut(s)	47
MaeIII	GTNAC	2 cut(s)	425, 616
MalI	GATC	1 cut(s)	200
MboI	GATC	1 cut(s)	198
MboII	GAAGA	3 cut(s)	289, 661, 731
MhlI	GDGCHC	3 cut(s)	39, 493, 645
MlsI	TGGCCA	1 cut(s)	206
MluCI	AATT	4 cut(s)	214, 272, 412, 688
MluNI	TGGCCA	1 cut(s)	206
Mox20I	TGGCCA	1 cut(s)	206
MscI	TGGCCA	1 cut(s)	206
MseI	TTAA	2 cut(s)	599, 696
MslI	CAYNNNNRTG	1 cut(s)	344
Msp20I	TGGCCA	1 cut(s)	206
MspI	CCGG	2 cut(s)	71, 177
MspR9I	CCNGG	5 cut(s)	72, 177, 454, 593, 622
MvaI	CCWGG	3 cut(s)	454, 593, 622
MwoI	GCNNNNNNNGC	2 cut(s)	632, 668
NciI	CCSGG	2 cut(s)	72, 177
NdeII	GATC	1 cut(s)	198
NlaIII	CATG	3 cut(s)	24, 265, 649
NlaIV	GGNNCC	3 cut(s)	69, 381, 485
NmuCI	GTSAC	2 cut(s)	425, 616
PagI	TCATGA	1 cut(s)	645
PfeI	GAWTC	4 cut(s)	28, 359, 449, 460
PkrI	GCNGC	1 cut(s)	338
Psp124BI	GAGCTC	1 cut(s)	645
Psp6I	CCWGG	3 cut(s)	452, 591, 620
PspEI	GGTNACC	1 cut(s)	616
PspFI	CCCAGC	1 cut(s)	40
PspGI	CCWGG	3 cut(s)	452, 591, 620
PspN4I	GGNNCC	3 cut(s)	69, 381, 485
PspPI	GGNCC	4 cut(s)	170, 265, 483, 586
RseI	CAYNNNNRTG	1 cut(s)	344
SacI	GAGCTC	1 cut(s)	645
SaqAI	TTAA	2 cut(s)	599, 696
SatI	GCNGC	1 cut(s)	337
Sau3AI	GATC	1 cut(s)	198
Sau96I	GGNCC	4 cut(s)	170, 265, 483, 586
ScrFI	CCNGG	5 cut(s)	72, 177, 454, 593, 622
SduI	GDGCHC	3 cut(s)	39, 493, 645
SfaNI	GCATC	1 cut(s)	649
SinI	GGWCC	4 cut(s)	170, 265, 483, 586
SmiMI	CAYNNNNRTG	1 cut(s)	344
SmlI	CTYRAG	2 cut(s)	32, 221
SmoI	CTYRAG	2 cut(s)	32, 221
Sse9I	AATT	4 cut(s)	214, 272, 412, 688
SsiI	CCGC	1 cut(s)	536
SspMI	CTAG	3 cut(s)	192, 252, 401
SstI	GAGCTC	1 cut(s)	645
StyD4I	CCNGG	5 cut(s)	70, 175, 452, 591, 620
StyI	CCWWGG	1 cut(s)	673
TaiI	ACGT	1 cut(s)	50
TaqI	TCGA	2 cut(s)	308, 711
TasI	AATT	4 cut(s)	214, 272, 412, 688
TfiI	GAWTC	4 cut(s)	28, 359, 449, 460
Tru1I	TTAA	2 cut(s)	599, 696
Tru9I	TTAA	2 cut(s)	599, 696
TscAI	CASTG	1 cut(s)	187
TseFI	GTSAC	2 cut(s)	425, 616
TseI	GCWGC	1 cut(s)	336
Tsp45I	GTSAC	2 cut(s)	425, 616
TspDTI	ATGAA	5 cut(s)	17, 406, 564, 662, 732
TspRI	CASTG	1 cut(s)	187
VpaK11BI	GGWCC	4 cut(s)	170, 265, 483, 586
XmiI	GTMKAC	1 cut(s)	293
XspI	CTAG	3 cut(s)	192, 252, 401

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.