Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8002042.1

Orthogroup ID

OG0017383

Physical Location & Seq

Genomic Coordinates Forward (+)

1 .. 527

Gene Structure 527 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8002042.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 527 bp

cacaaagacttggttctcggttcttacttgccatttgtgttgcaaaaggccgaggaagttaaggaagagaggaagaccttgaagctcttcactttgaaatatgggagaaggattcaagtagtgggagggtccatgtggcaatcagtgaaccttgatcaccccgcgacgttcgacacattggcaatggatgaagaggtccacaaaacgatagtggaggatcttgagaggtttgtgaggaggaaggagtattataggaaggttgggaaggcttggaaaaggggatacttgctgtttgggcctcctgggactggcaagtcgagcttggttgctgccatggccaattacttgaattttgatatctatgacttggagttgagtgagattaggagtaattctcagctcaggacgttgatgatgtccacggcgaacaggtccattcttgtggtggaggatattgattgctccattgatctacagaacaggcttgcaaatgccagggccgccggccctcgtgcttttaatcctcc

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005740 GO:0005743 GO:0006996 GO:0007005 GO:0008150 GO:0009987 GO:0016020 GO:0016043 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017004 GO:0017062 GO:0017111 GO:0019866 GO:0022607 GO:0031090 GO:0031966 GO:0031967 GO:0031975 GO:0033108 GO:0034551 GO:0034622 GO:0042623 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043933 GO:0044085 GO:0044422 GO:0044424 GO:0044429 GO:0044444 GO:0044446 GO:0044464 GO:0065003 GO:0071840

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

AAA AAA_assoc

Protein Analysis

176

Amino Acids

20.11

Weight (kDa)

9.16

Isoelectric Point (pI)

49.09

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0017383)

Species	Orthologous Gene IDs
malus_domestica	MD15G1248000.v1.1
prunus_persica	Prupe.8G092600_v2.0.a1
pyrus_communis	pycom15g21780
rosa_chinensis	RchiOBHm_Chr6g0265431
rosa_laevigata	RLG00000014189
rosa_multiflora	Rmu_co8002042.1_g000001 Rmu_ssc0000066.1_g000008
rosa_roxburghii	Rroxscaffold_175G00432400 Rroxscaffold_7G00202660
rosa_rugosa	Rorug06G0017200
rosa_samantha	Rh6BG137800 Rh6DG122100
rosa_wichuraiana	Rw6G011980

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	313
AccII	CGCG	1 cut(s)	164
AciI	CCGC	2 cut(s)	162, 501
AclWI	GGATC	1 cut(s)	225
AcoI	YGGCCR	1 cut(s)	336
AcsI	RAATTY	1 cut(s)	349
AfiI	CCNNNNNNNGG	1 cut(s)	308
AgsI	TTSAA	4 cut(s)	82, 97, 116, 349
AjnI	CCWGG	2 cut(s)	301, 494
AluBI	AGCT	3 cut(s)	85, 321, 400
AluI	AGCT	3 cut(s)	85, 321, 400
AlwI	GGATC	1 cut(s)	225
AoxI	GGCC	5 cut(s)	48, 296, 336, 498, 505
ApeKI	GCWGC	1 cut(s)	329
ApoI	RAATTY	1 cut(s)	349
Asp700I	GAANNNNTTC	1 cut(s)	86
AspS9I	GGNCC	6 cut(s)	129, 196, 296, 432, 498, 506
AsuHPI	GGTGA	1 cut(s)	149
AvaII	GGWCC	3 cut(s)	129, 196, 432
BalI	TGGCCA	1 cut(s)	338
BauI	CACGAG	1 cut(s)	510
BbsI	GAAGAC	1 cut(s)	80
BbvI	GCAGC	1 cut(s)	316
BceAI	ACGGC	1 cut(s)	438
BciT130I	CCWGG	2 cut(s)	303, 496
BciVI	GTATCC	1 cut(s)	275
BclI	TGATCA	1 cut(s)	154
BfmI	CTRYAG	1 cut(s)	473
BfuI	GTATCC	1 cut(s)	275
BisI	GCNGC	2 cut(s)	330, 501
BlsI	GCNGC	2 cut(s)	331, 502
Bme1390I	CCNGG	2 cut(s)	303, 496
Bme18I	GGWCC	3 cut(s)	129, 196, 432
BmgT120I	GGNCC	6 cut(s)	129, 196, 296, 432, 498, 506
BmiI	GGNNCC	1 cut(s)	130
BmrFI	CCNGG	2 cut(s)	303, 496
BpiI	GAAGAC	1 cut(s)	80
BplI	GAGNNNNNCTC	2 cut(s)	379, 411
Bpu10I	CCTNAGC	1 cut(s)	401
BpuEI	CTTGAG	1 cut(s)	242
BsaJI	CCNNGG	5 cut(s)	51, 302, 333, 420, 495
Bsc4I	CCNNNNNNNGG	1 cut(s)	308
Bse118I	RCCGGY	1 cut(s)	503
Bse1I	ACTGG	1 cut(s)	313
Bse3DI	GCAATG	1 cut(s)	189
BseBI	CCWGG	2 cut(s)	303, 496
BseDI	CCNNGG	5 cut(s)	51, 302, 333, 420, 495
BseGI	GGATG	1 cut(s)	193
BseLI	CCNNNNNNNGG	1 cut(s)	308
BseMI	GCAATG	1 cut(s)	189
BseMII	CTCAG	2 cut(s)	410, 415
BseNI	ACTGG	1 cut(s)	313
BseRI	GAGGAG	1 cut(s)	250
BseXI	GCAGC	1 cut(s)	316
Bsh1236I	CGCG	1 cut(s)	164
BshFI	GGCC	5 cut(s)	50, 298, 338, 500, 507
BsiSI	CCGG	1 cut(s)	504
BslFI	GGGAC	1 cut(s)	319
BslI	CCNNNNNNNGG	1 cut(s)	308
BsmFI	GGGAC	1 cut(s)	319
BsnI	GGCC	5 cut(s)	50, 298, 338, 500, 507
Bsp143I	GATC	3 cut(s)	154, 217, 469
Bsp19I	CCATGG	1 cut(s)	333
BspACI	CCGC	2 cut(s)	162, 501
BspANI	GGCC	5 cut(s)	50, 298, 338, 500, 507
BspCNI	CTCAG	2 cut(s)	409, 414
BspFNI	CGCG	1 cut(s)	164
BspLI	GGNNCC	1 cut(s)	130
BspPI	GGATC	1 cut(s)	225
BspQI	GCTCTTC	1 cut(s)	92
BsrDI	GCAATG	1 cut(s)	189
BsrFI	RCCGGY	1 cut(s)	503
BsrI	ACTGG	1 cut(s)	313
BssAI	RCCGGY	1 cut(s)	503
BssECI	CCNNGG	5 cut(s)	51, 302, 333, 420, 495
BssMI	GATC	3 cut(s)	154, 217, 469
BssSI	CACGAG	1 cut(s)	510
BssT1I	CCWWGG	1 cut(s)	333
Bst2BI	CACGAG	1 cut(s)	510
Bst2UI	CCWGG	2 cut(s)	303, 496
Bst6I	CTCTTC	3 cut(s)	60, 92, 186
BstC8I	GCNNGC	2 cut(s)	486, 505
BstDEI	CTNAG	2 cut(s)	396, 401
BstDSI	CCRYGG	2 cut(s)	333, 420
BstF5I	GGATG	1 cut(s)	193
BstFNI	CGCG	1 cut(s)	164
BstKTI	GATC	3 cut(s)	157, 220, 472
BstMBI	GATC	3 cut(s)	154, 217, 469
BstMWI	GCNNNNNNNGC	4 cut(s)	295, 318, 335, 500
BstNI	CCWGG	2 cut(s)	303, 496
BstSCI	CCNGG	2 cut(s)	301, 494
BstSFI	CTRYAG	1 cut(s)	473
BstUI	CGCG	1 cut(s)	164
BstV1I	GCAGC	1 cut(s)	316
BstV2I	GAAGAC	1 cut(s)	80
BstX2I	RGATCY	1 cut(s)	217
BstXI	CCANNNNNNTGG	1 cut(s)	442
BstYI	RGATCY	1 cut(s)	217
BsuI	GTATCC	1 cut(s)	275
BsuRI	GGCC	5 cut(s)	50, 298, 338, 500, 507
BtgI	CCRYGG	2 cut(s)	333, 420
BtsCI	GGATG	1 cut(s)	193
BtsIMutI	CAGTG	1 cut(s)	150
Cac8I	GCNNGC	2 cut(s)	486, 505
Cfr10I	RCCGGY	1 cut(s)	503
Cfr13I	GGNCC	6 cut(s)	129, 196, 296, 432, 498, 506
CviAII	CATG	2 cut(s)	133, 334
DdeI	CTNAG	2 cut(s)	396, 401
DpnI	GATC	3 cut(s)	156, 219, 471
DpnII	GATC	3 cut(s)	154, 217, 469
DrdI	GACNNNNNNGTC	1 cut(s)	313
DseDI	GACNNNNNNGTC	1 cut(s)	313
EaeI	YGGCCR	1 cut(s)	336
Eam1104I	CTCTTC	3 cut(s)	60, 92, 186
EarI	CTCTTC	3 cut(s)	60, 92, 186
Eco130I	CCWWGG	1 cut(s)	333
Eco32I	GATATC	1 cut(s)	358
Eco47I	GGWCC	3 cut(s)	129, 196, 432
EcoRII	CCWGG	2 cut(s)	301, 494
EcoRV	GATATC	1 cut(s)	358
EcoT14I	CCWWGG	1 cut(s)	333
ErhI	CCWWGG	1 cut(s)	333
FaeI	CATG	2 cut(s)	136, 337
FaiI	YATR	5 cut(s)	102, 134, 252, 335, 363
FalI	AAGNNNNNCTT	2 cut(s)	305, 337
FaqI	GGGAC	1 cut(s)	319
FatI	CATG	2 cut(s)	132, 333
FauI	CCCGC	1 cut(s)	169
FbaI	TGATCA	1 cut(s)	154
Fnu4HI	GCNGC	2 cut(s)	330, 501
FokI	GGATG	1 cut(s)	200
Fsp4HI	GCNGC	2 cut(s)	330, 501
GluI	GCNGC	2 cut(s)	330, 501
HaeIII	GGCC	5 cut(s)	50, 298, 338, 500, 507
HapII	CCGG	1 cut(s)	504
Hin1II	CATG	2 cut(s)	136, 337
HinfI	GANTC	1 cut(s)	112
HpaII	CCGG	1 cut(s)	504
HphI	GGTGA	1 cut(s)	149
Hpy166II	GTNNAC	3 cut(s)	148, 199, 420
Hpy188III	TCNNGA	2 cut(s)	221, 403
Hpy8I	GTNNAC	3 cut(s)	148, 199, 420
Hpy99I	CGWCG	1 cut(s)	169
HpyAV	CCTTC	4 cut(s)	102, 235, 250, 259
HpyCH4IV	ACGT	2 cut(s)	167, 407
HpyCH4V	TGCA	2 cut(s)	43, 488
HpyF10VI	GCNNNNNNNGC	4 cut(s)	295, 318, 335, 500
HpyF3I	CTNAG	2 cut(s)	396, 401
HpySE526I	ACGT	2 cut(s)	167, 407
Hsp92II	CATG	2 cut(s)	136, 337
KroI	GCCGGC	1 cut(s)	503
KroNI	GCCGGC	1 cut(s)	505
Ksp22I	TGATCA	1 cut(s)	154
Kzo9I	GATC	3 cut(s)	154, 217, 469
LguI	GCTCTTC	1 cut(s)	92
LmnI	GCTCC	1 cut(s)	467
LpnPI	CCDG	9 cut(s)	288, 294, 315, 388, 415, 466, 481, 508, 517
Lsp1109I	GCAGC	1 cut(s)	316
MaeII	ACGT	2 cut(s)	167, 407
MalI	GATC	3 cut(s)	156, 219, 471
MboI	GATC	3 cut(s)	154, 217, 469
MboII	GAAGA	4 cut(s)	77, 79, 85, 203
MflI	RGATCY	1 cut(s)	217
MlsI	TGGCCA	1 cut(s)	338
MluCI	AATT	3 cut(s)	340, 349, 391
MluNI	TGGCCA	1 cut(s)	338
Mox20I	TGGCCA	1 cut(s)	338
MroNI	GCCGGC	1 cut(s)	503
MroXI	GAANNNNTTC	1 cut(s)	86
MscI	TGGCCA	1 cut(s)	338
MseI	TTAA	2 cut(s)	60, 519
MslI	CAYNNNNRTG	1 cut(s)	440
Msp20I	TGGCCA	1 cut(s)	338
MspI	CCGG	1 cut(s)	504
MspR9I	CCNGG	2 cut(s)	303, 496
MvaI	CCWGG	2 cut(s)	303, 496
MvnI	CGCG	1 cut(s)	164
MwoI	GCNNNNNNNGC	4 cut(s)	295, 318, 335, 500
NaeI	GCCGGC	1 cut(s)	505
NcoI	CCATGG	1 cut(s)	333
NdeII	GATC	3 cut(s)	154, 217, 469
NgoMIV	GCCGGC	1 cut(s)	503
NlaIII	CATG	2 cut(s)	136, 337
NlaIV	GGNNCC	1 cut(s)	130
NmeAIII	GCCGAG	1 cut(s)	76
PciSI	GCTCTTC	1 cut(s)	92
PdiI	GCCGGC	1 cut(s)	505
PdmI	GAANNNNTTC	1 cut(s)	86
PfeI	GAWTC	1 cut(s)	112
PkrI	GCNGC	2 cut(s)	331, 502
Psp6I	CCWGG	2 cut(s)	301, 494
PspGI	CCWGG	2 cut(s)	301, 494
PspN4I	GGNNCC	1 cut(s)	130
PspPI	GGNCC	6 cut(s)	129, 196, 296, 432, 498, 506
PsuI	RGATCY	1 cut(s)	217
RseI	CAYNNNNRTG	1 cut(s)	440
SapI	GCTCTTC	1 cut(s)	92
SaqAI	TTAA	2 cut(s)	60, 519
SatI	GCNGC	2 cut(s)	330, 501
Sau3AI	GATC	3 cut(s)	154, 217, 469
Sau96I	GGNCC	6 cut(s)	129, 196, 296, 432, 498, 506
ScrFI	CCNGG	2 cut(s)	303, 496
SfcI	CTRYAG	1 cut(s)	473
SinI	GGWCC	3 cut(s)	129, 196, 432
SmiMI	CAYNNNNRTG	1 cut(s)	440
SmlI	CTYRAG	1 cut(s)	221
SmoI	CTYRAG	1 cut(s)	221
Sse9I	AATT	3 cut(s)	340, 349, 391
SsiI	CCGC	2 cut(s)	162, 501
StyD4I	CCNGG	2 cut(s)	301, 494
StyI	CCWWGG	1 cut(s)	333
TaiI	ACGT	2 cut(s)	170, 410
TaqI	TCGA	2 cut(s)	171, 317
TasI	AATT	3 cut(s)	340, 349, 391
TauI	GCSGC	1 cut(s)	503
TfiI	GAWTC	1 cut(s)	112
Tru1I	TTAA	2 cut(s)	60, 519
Tru9I	TTAA	2 cut(s)	60, 519
TscAI	CASTG	1 cut(s)	150
TseI	GCWGC	1 cut(s)	329
TspDTI	ATGAA	1 cut(s)	204
TspRI	CASTG	1 cut(s)	150
VpaK11BI	GGWCC	3 cut(s)	129, 196, 432
XapI	RAATTY	1 cut(s)	349
XcmI	CCANNNNNNNNNTGG	1 cut(s)	442
XmnI	GAANNNNTTC	1 cut(s)	86

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.