Rw6G011980

Belongs to the AAA ATPase family

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr6
Physical Location & Seq
Reverse (-)
21715989 .. 21718542
2554 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw6G011980.1

Sequence Viewer

Length: 1119 bp
ATGCCGACCCAACAAAACAAAATTTCCGTTTCCATGGAAAAGAACGAAGAGATCATTGACTTCTTCGACGGAGTCAAACTCCAGTGGAAGCTGGTCTCAACCCAAACCTCGCCCAAGTACATAGGCGGCCCAGGATCCGAATACGAGTCCACGCTCATGTCGGAGCTCCGGTACTTCGAGTTGAGCTTCCACAAGAAGCACAAAGACTTGGTTCTCGGTTCTTACTTGCCATTTGTGTTGCAAAAGGCCGAGGAAGTTAAGGAAGAGAGGAAGACCTTGAAGCTTTTCACTTTGAAATATGGGAGAAGGATTCAAGTAGTGGGAGGGTCCATGTGGCAATCAGTGAACCTTGATCACCCCGCGACGTTCGACACATTGGCAATGGATGAAGAGGTCCACAAGACGATAGTGGAGGATCTTGAGAGGTTTGTGAGGAGGAAGGAGTATTATAGGAAGGTTGGGAAGGCTTGGAAAAGGGGATACTTGCTGTTTGGGCCTCCTGGGACTGGCAAGTCGAGCTTGGTTGCTGCCATGGCCAATTACTTGAATTTTGATATCTATGACTTGGAGTTGAGTGAGATTAGGAGTAATTCTCAGCTCAGGAGGTTGATGATGTCCACGGCGAACAGGTCCATTCTTGTGGTGGAGGATATTGATTGCTCCATTGATCTACAGAACAGGCTTGCAAATGCCAGGGCCGCCGGCCCTCGTGCTTTTAATCCTCCGAAGACTGAGGTGACTCTGTCAGGATTACTCAACTTCATAGATGGACTGTGGTCAAGCTGTGGCGACGAGCGGATCATAGTCTTCACTACCAATCACAAAGAGCGGCTTGACTCTGCCTTGTTACGTCCTGGTCGAATGGATGTGCACATCCACATGTCCTTTTGCACCCCATGTGGGTTCAAAATTCTTGCTTCTAACTACCTTGGAATTATGGAGCACACACTTTTCTTTGACATAGAGAAGTTGATAGCCACAATGAAGGTTACTCCGGCAGAGATAGGAGAGCAGTTACTGAAGAATGAGGAGCCTGAAGGTGCATTGAGAGACCTACTTGAGTTCCTTGAGAGGAAGAATAGAGCAATTGAGGAAGCTGCAAGTAAGTCAGAGAGTTGA

Protein Analysis

372

Amino Acids

42.49

Weight (kDa)

6.49

Isoelectric Point (pI)

51.88

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
AAA_assoc PF14363 5 - 32 5.4e-06 Domain associated at C-terminal with AAA
AAA PF00004 161 - 294 3e-19 ATPase family associated with various cellular activities (AAA)
AAA_lid_At3g28540 PF25568 297 - 365 9.4e-22 At3g28540-like, AAA+ ATPase lid domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes (Group: OG0017383)

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 511
AccBSI CCGCTC 2 cut(s) 796, 829
AccII CGCG 1 cut(s) 362
AciI CCGC 5 cut(s) 126, 360, 699, 796, 829
AclWI GGATC 4 cut(s) 129, 142, 423, 806
AcoI YGGCCR 1 cut(s) 534
AcsI RAATTY 3 cut(s) 21, 547, 909
AcuI CTGAAG 2 cut(s) 1040, 1056
AfaI GTAC 2 cut(s) 119, 173
AfiI CCNNNNNNNGG 2 cut(s) 506, 900
AflIII ACRYGT 1 cut(s) 879
AgsI TTSAA 5 cut(s) 280, 295, 314, 547, 907
AjnI CCWGG 4 cut(s) 130, 499, 692, 853
AluBI AGCT 8 cut(s) 91, 166, 186, 283, 519, 598, 783, 1097
AluI AGCT 8 cut(s) 91, 166, 186, 283, 519, 598, 783, 1097
Alw21I GWGCWC 3 cut(s) 168, 873, 945
Alw26I GTCTC 2 cut(s) 100, 1044
Alw44I GTGCAC 1 cut(s) 869
AlwI GGATC 4 cut(s) 129, 142, 423, 806
AlwNI CAGNNNCTG 1 cut(s) 1018
AoxI GGCC 6 cut(s) 127, 246, 494, 534, 696, 703
ApaLI GTGCAC 1 cut(s) 869
ApeKI GCWGC 2 cut(s) 527, 1097
ApoI RAATTY 3 cut(s) 21, 547, 909
Asp700I GAANNNNTTC 1 cut(s) 284
AspS9I GGNCC 7 cut(s) 128, 327, 394, 494, 630, 696, 704
AsuHPI GGTGA 2 cut(s) 347, 748
AvaII GGWCC 3 cut(s) 327, 394, 630
BaeGI GKGCMC 1 cut(s) 873
BalI TGGCCA 1 cut(s) 536
BamHI GGATCC 1 cut(s) 134
BanII GRGCYC 1 cut(s) 168
BauI CACGAG 1 cut(s) 708
BbsI GAAGAC 3 cut(s) 278, 734, 799
Bbv12I GWGCWC 3 cut(s) 168, 873, 945
BbvI GCAGC 2 cut(s) 514, 1084
BccI CCATC 1 cut(s) 761
BceAI ACGGC 1 cut(s) 636
BciT130I CCWGG 4 cut(s) 132, 501, 694, 855
BciVI GTATCC 1 cut(s) 473
BclI TGATCA 1 cut(s) 352
BcoDI GTCTC 2 cut(s) 100, 1044
BfmI CTRYAG 1 cut(s) 671
BfuI GTATCC 1 cut(s) 473
BisI GCNGC 5 cut(s) 127, 528, 699, 830, 1098
BlsI GCNGC 5 cut(s) 128, 529, 700, 831, 1099
Bme1390I CCNGG 4 cut(s) 132, 501, 694, 855
Bme18I GGWCC 3 cut(s) 327, 394, 630
BmgT120I GGNCC 7 cut(s) 128, 327, 394, 494, 630, 696, 704
BmiI GGNNCC 3 cut(s) 136, 328, 1032
BmrFI CCNGG 4 cut(s) 132, 501, 694, 855
BoxI GACNNNNGTC 1 cut(s) 775
BpiI GAAGAC 3 cut(s) 278, 734, 799
BplI GAGNNNNNCTC 4 cut(s) 63, 95, 577, 609
BpmI CTGGAG 1 cut(s) 65
Bpu10I CCTNAGC 1 cut(s) 599
BpuEI CTTGAG 3 cut(s) 440, 1079, 1088
BsaI GGTCTC 2 cut(s) 100, 1044
BsaJI CCNNGG 8 cut(s) 33, 130, 249, 500, 531, 618, 693, 928
BsaWI WCCGGW 1 cut(s) 168
BsaXI ACNNNNNCTCC 2 cut(s) 155, 185
Bsc4I CCNNNNNNNGG 2 cut(s) 506, 900
Bse118I RCCGGY 1 cut(s) 701
Bse1I ACTGG 2 cut(s) 82, 511
Bse3DI GCAATG 1 cut(s) 387
BseBI CCWGG 4 cut(s) 132, 501, 694, 855
BseDI CCNNGG 8 cut(s) 33, 130, 249, 500, 531, 618, 693, 928
BseGI GGATG 3 cut(s) 391, 871, 873
BseLI CCNNNNNNNGG 2 cut(s) 506, 900
BseMI GCAATG 1 cut(s) 387
BseMII CTCAG 3 cut(s) 608, 613, 723
BseNI ACTGG 2 cut(s) 82, 511
BseRI GAGGAG 2 cut(s) 448, 1043
BseSI GKGCMC 1 cut(s) 873
BseXI GCAGC 2 cut(s) 514, 1084
Bsh1236I CGCG 1 cut(s) 362
BshFI GGCC 6 cut(s) 129, 248, 496, 536, 698, 705
BsiHKAI GWGCWC 3 cut(s) 168, 873, 945
BsiSI CCGG 3 cut(s) 169, 702, 995
BslFI GGGAC 1 cut(s) 517
BslI CCNNNNNNNGG 2 cut(s) 506, 900
BsmAI GTCTC 2 cut(s) 100, 1044
BsmFI GGGAC 1 cut(s) 517
BsnI GGCC 6 cut(s) 129, 248, 496, 536, 698, 705
Bso31I GGTCTC 2 cut(s) 100, 1044
Bsp1286I GDGCHC 3 cut(s) 168, 873, 945
Bsp143I GATC 6 cut(s) 51, 134, 352, 415, 667, 798
Bsp19I CCATGG 2 cut(s) 33, 531
BspACI CCGC 5 cut(s) 126, 360, 699, 796, 829
BspANI GGCC 6 cut(s) 129, 248, 496, 536, 698, 705
BspCNI CTCAG 3 cut(s) 607, 612, 724
BspFNI CGCG 1 cut(s) 362
BspLI GGNNCC 3 cut(s) 136, 328, 1032
BspPI GGATC 4 cut(s) 129, 142, 423, 806
BspTNI GGTCTC 2 cut(s) 100, 1044
BsrBI CCGCTC 2 cut(s) 796, 829
BsrDI GCAATG 1 cut(s) 387
BsrFI RCCGGY 1 cut(s) 701
BsrI ACTGG 2 cut(s) 82, 511
BssAI RCCGGY 1 cut(s) 701
BssECI CCNNGG 8 cut(s) 33, 130, 249, 500, 531, 618, 693, 928
BssMI GATC 6 cut(s) 51, 134, 352, 415, 667, 798
BssSI CACGAG 1 cut(s) 708
BssT1I CCWWGG 3 cut(s) 33, 531, 928
Bst2BI CACGAG 1 cut(s) 708
Bst2UI CCWGG 4 cut(s) 132, 501, 694, 855
Bst4CI ACNGT 1 cut(s) 774
Bst6I CTCTTC 3 cut(s) 42, 258, 384
BstC8I GCNNGC 2 cut(s) 684, 703
BstDEI CTNAG 3 cut(s) 594, 599, 732
BstDSI CCRYGG 3 cut(s) 33, 531, 618
BstF5I GGATG 3 cut(s) 391, 871, 873
BstFNI CGCG 1 cut(s) 362
BstKTI GATC 6 cut(s) 54, 137, 355, 418, 670, 801
BstMAI GTCTC 2 cut(s) 100, 1044
BstMBI GATC 6 cut(s) 51, 134, 352, 415, 667, 798
BstMWI GCNNNNNNNGC 4 cut(s) 493, 516, 533, 698
BstNI CCWGG 4 cut(s) 132, 501, 694, 855
BstNSI RCATGY 1 cut(s) 883
BstPAI GACNNNNGTC 1 cut(s) 775
BstSCI CCNGG 4 cut(s) 130, 499, 692, 853
BstSFI CTRYAG 1 cut(s) 671
BstSLI GKGCMC 1 cut(s) 873
BstUI CGCG 1 cut(s) 362
BstV1I GCAGC 2 cut(s) 514, 1084
BstV2I GAAGAC 3 cut(s) 278, 734, 799
BstX2I RGATCY 2 cut(s) 134, 415
BstXI CCANNNNNNTGG 1 cut(s) 640
BstYI RGATCY 2 cut(s) 134, 415
BsuI GTATCC 1 cut(s) 473
BsuRI GGCC 6 cut(s) 129, 248, 496, 536, 698, 705
BtgI CCRYGG 3 cut(s) 33, 531, 618
BtsCI GGATG 3 cut(s) 391, 871, 873
BtsIMutI CAGTG 2 cut(s) 89, 348
Cac8I GCNNGC 2 cut(s) 684, 703
CaiI CAGNNNCTG 1 cut(s) 1018
Cfr10I RCCGGY 1 cut(s) 701
Cfr13I GGNCC 7 cut(s) 128, 327, 394, 494, 630, 696, 704
Csp6I GTAC 2 cut(s) 118, 172
CviAII CATG 6 cut(s) 34, 157, 331, 532, 880, 897
CviQI GTAC 2 cut(s) 118, 172
DdeI CTNAG 3 cut(s) 594, 599, 732
DpnI GATC 6 cut(s) 53, 136, 354, 417, 669, 800
DpnII GATC 6 cut(s) 51, 134, 352, 415, 667, 798
DrdI GACNNNNNNGTC 1 cut(s) 511
DseDI GACNNNNNNGTC 1 cut(s) 511
EaeI YGGCCR 1 cut(s) 534
Eam1104I CTCTTC 3 cut(s) 42, 258, 384
EarI CTCTTC 3 cut(s) 42, 258, 384
Ecl136II GAGCTC 1 cut(s) 166
Eco130I CCWWGG 3 cut(s) 33, 531, 928
Eco24I GRGCYC 1 cut(s) 168
Eco31I GGTCTC 2 cut(s) 100, 1044
Eco32I GATATC 1 cut(s) 556
Eco47I GGWCC 3 cut(s) 327, 394, 630
Eco53kI GAGCTC 1 cut(s) 166
Eco57I CTGAAG 2 cut(s) 1040, 1056
EcoICRI GAGCTC 1 cut(s) 166
EcoRII CCWGG 4 cut(s) 130, 499, 692, 853
EcoRV GATATC 1 cut(s) 556
EcoT14I CCWWGG 3 cut(s) 33, 531, 928
EcoT38I GRGCYC 1 cut(s) 168
ErhI CCWWGG 3 cut(s) 33, 531, 928
FaeI CATG 6 cut(s) 37, 160, 334, 535, 883, 900
FalI AAGNNNNNCTT 4 cut(s) 503, 535, 816, 848
FaqI GGGAC 1 cut(s) 517
FatI CATG 6 cut(s) 33, 156, 330, 531, 879, 896
FauI CCCGC 1 cut(s) 367
FbaI TGATCA 1 cut(s) 352
Fnu4HI GCNGC 5 cut(s) 127, 528, 699, 830, 1098
FokI GGATG 3 cut(s) 398, 860, 878
FriOI GRGCYC 1 cut(s) 168
Fsp4HI GCNGC 5 cut(s) 127, 528, 699, 830, 1098
GluI GCNGC 5 cut(s) 127, 528, 699, 830, 1098
GsuI CTGGAG 1 cut(s) 65
HaeIII GGCC 6 cut(s) 129, 248, 496, 536, 698, 705
HapII CCGG 3 cut(s) 169, 702, 995
Hin1II CATG 6 cut(s) 37, 160, 334, 535, 883, 900
HindIII AAGCTT 1 cut(s) 281
HinfI GANTC 5 cut(s) 72, 146, 310, 739, 836
HpaII CCGG 3 cut(s) 169, 702, 995
HphI GGTGA 2 cut(s) 347, 748
Hpy166II GTNNAC 5 cut(s) 150, 346, 397, 618, 871
Hpy188I TCNGA 4 cut(s) 139, 163, 726, 1111
Hpy188III TCNNGA 3 cut(s) 419, 601, 747
Hpy8I GTNNAC 5 cut(s) 150, 346, 397, 618, 871
Hpy99I CGWCG 3 cut(s) 71, 367, 794
HpyAV CCTTC 6 cut(s) 300, 433, 448, 457, 979, 1031
HpyCH4III ACNGT 1 cut(s) 774
HpyCH4IV ACGT 2 cut(s) 365, 850
HpyCH4V TGCA 6 cut(s) 241, 686, 871, 891, 1043, 1100
HpyF10VI GCNNNNNNNGC 4 cut(s) 493, 516, 533, 698
HpyF3I CTNAG 3 cut(s) 594, 599, 732
HpySE526I ACGT 2 cut(s) 365, 850
Hsp92II CATG 6 cut(s) 37, 160, 334, 535, 883, 900
KroI GCCGGC 1 cut(s) 701
KroNI GCCGGC 1 cut(s) 703
Ksp22I TGATCA 1 cut(s) 352
Kzo9I GATC 6 cut(s) 51, 134, 352, 415, 667, 798
LmnI GCTCC 5 cut(s) 163, 171, 665, 940, 1030
Lsp1109I GCAGC 2 cut(s) 514, 1084
MaeII ACGT 2 cut(s) 365, 850
MaeIII GTNAC 4 cut(s) 736, 846, 988, 1014
MalI GATC 6 cut(s) 53, 136, 354, 417, 669, 800
MbiI CCGCTC 2 cut(s) 796, 829
MboI GATC 6 cut(s) 51, 134, 352, 415, 667, 798
MboII GAAGA 9 cut(s) 55, 59, 275, 283, 401, 739, 799, 1033, 1087
MfeI CAATTG 1 cut(s) 1086
MflI RGATCY 2 cut(s) 134, 415
MhlI GDGCHC 3 cut(s) 168, 873, 945
MlsI TGGCCA 1 cut(s) 536
MluCI AATT 7 cut(s) 21, 538, 547, 589, 909, 933, 1086
MluNI TGGCCA 1 cut(s) 536
MlyI GAGTC 4 cut(s) 81, 155, 733, 830
MmeI TCCRAC 1 cut(s) 141
Mox20I TGGCCA 1 cut(s) 536
MroNI GCCGGC 1 cut(s) 701
MroXI GAANNNNTTC 1 cut(s) 284
MscI TGGCCA 1 cut(s) 536
MseI TTAA 2 cut(s) 258, 717
MslI CAYNNNNRTG 3 cut(s) 155, 638, 878
Msp20I TGGCCA 1 cut(s) 536
MspI CCGG 3 cut(s) 169, 702, 995
MspR9I CCNGG 4 cut(s) 132, 501, 694, 855
MunI CAATTG 1 cut(s) 1086
MvaI CCWGG 4 cut(s) 132, 501, 694, 855
MvnI CGCG 1 cut(s) 362
MwoI GCNNNNNNNGC 4 cut(s) 493, 516, 533, 698
NaeI GCCGGC 1 cut(s) 703
NcoI CCATGG 2 cut(s) 33, 531
NdeII GATC 6 cut(s) 51, 134, 352, 415, 667, 798
NgoMIV GCCGGC 1 cut(s) 701
NlaIII CATG 6 cut(s) 37, 160, 334, 535, 883, 900
NlaIV GGNNCC 3 cut(s) 136, 328, 1032
NmeAIII GCCGAG 1 cut(s) 274
NmuCI GTSAC 1 cut(s) 736
NspI RCATGY 1 cut(s) 883
PciI ACATGT 1 cut(s) 879
PcsI WCGNNNNNNNCGW 1 cut(s) 856
PdiI GCCGGC 1 cut(s) 703
PdmI GAANNNNTTC 1 cut(s) 284
PfeI GAWTC 1 cut(s) 310
PflFI GACNNNGTC 2 cut(s) 71, 742
PkrI GCNGC 5 cut(s) 128, 529, 700, 831, 1099
PleI GAGTC 4 cut(s) 80, 154, 733, 830
PpsI GAGTC 4 cut(s) 80, 154, 733, 830
PscI ACATGT 1 cut(s) 879
PshAI GACNNNNGTC 1 cut(s) 775
Psp124BI GAGCTC 1 cut(s) 168
Psp6I CCWGG 4 cut(s) 130, 499, 692, 853
PspGI CCWGG 4 cut(s) 130, 499, 692, 853
PspN4I GGNNCC 3 cut(s) 136, 328, 1032
PspPI GGNCC 7 cut(s) 128, 327, 394, 494, 630, 696, 704
PstNI CAGNNNCTG 1 cut(s) 1018
PsuI RGATCY 2 cut(s) 134, 415
PsyI GACNNNGTC 2 cut(s) 71, 742
RsaI GTAC 2 cut(s) 119, 173
RsaNI GTAC 2 cut(s) 118, 172
RseI CAYNNNNRTG 3 cut(s) 155, 638, 878
SacI GAGCTC 1 cut(s) 168
SaqAI TTAA 2 cut(s) 258, 717
SatI GCNGC 5 cut(s) 127, 528, 699, 830, 1098
Sau3AI GATC 6 cut(s) 51, 134, 352, 415, 667, 798
Sau96I GGNCC 7 cut(s) 128, 327, 394, 494, 630, 696, 704
SchI GAGTC 4 cut(s) 81, 155, 733, 830
ScrFI CCNGG 4 cut(s) 132, 501, 694, 855
SduI GDGCHC 3 cut(s) 168, 873, 945
SfcI CTRYAG 1 cut(s) 671
SinI GGWCC 3 cut(s) 327, 394, 630
SmiMI CAYNNNNRTG 3 cut(s) 155, 638, 878
SmlI CTYRAG 3 cut(s) 419, 1058, 1067
SmoI CTYRAG 3 cut(s) 419, 1058, 1067
Sse9I AATT 7 cut(s) 21, 538, 547, 589, 909, 933, 1086
SsiI CCGC 5 cut(s) 126, 360, 699, 796, 829
SstI GAGCTC 1 cut(s) 168
StyD4I CCNGG 4 cut(s) 130, 499, 692, 853
StyI CCWWGG 3 cut(s) 33, 531, 928
TaaI ACNGT 1 cut(s) 774
TaiI ACGT 2 cut(s) 368, 853
TaqI TCGA 5 cut(s) 66, 177, 369, 515, 859
TasI AATT 7 cut(s) 21, 538, 547, 589, 909, 933, 1086
TatI WGTACW 1 cut(s) 117
TauI GCSGC 3 cut(s) 129, 701, 832
TfiI GAWTC 1 cut(s) 310
Tru1I TTAA 2 cut(s) 258, 717
Tru9I TTAA 2 cut(s) 258, 717
TscAI CASTG 2 cut(s) 89, 348
TseFI GTSAC 1 cut(s) 736
TseI GCWGC 2 cut(s) 527, 1097
Tsp45I GTSAC 1 cut(s) 736
TspDTI ATGAA 3 cut(s) 402, 751, 998
TspGWI ACGGA 2 cut(s) 16, 84
TspRI CASTG 2 cut(s) 89, 348
Tth111I GACNNNGTC 2 cut(s) 71, 742
VneI GTGCAC 1 cut(s) 869
VpaK11BI GGWCC 3 cut(s) 327, 394, 630
XapI RAATTY 3 cut(s) 21, 547, 909
XceI RCATGY 1 cut(s) 883
XcmI CCANNNNNNNNNTGG 1 cut(s) 640
XmnI GAANNNNTTC 1 cut(s) 284
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.