Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr15

Orthogroup ID

OG0016599

Physical Location & Seq

Genomic Coordinates Forward (+)

31117911 .. 31120080

Gene Structure 2170 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD15G1309800.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2148 bp

ATGGCTGTTAGGTTGCCCAGGCTTTCAAATTTGCTCATATCATTTGAAATGAACTTACCAAGAAGACTAAGCCAACTGAACTACCTGAACAACTTCATGTCTTCTTCTCAATCCTTTACTGAGTTTTACTCTTCTCTGATTCAACAATGCATACACACAAGGTCGTTGATGGACGTTGGAATTGTTCAGACCCATATGATCAAATCCGGTTGCATTCACCTCTCTGTAGGCAACAAGCTCGTCGATGCGGGCTTGAAGTGTGGGAGCATTAGCTATGCACGCAAACTGTTTGATGAATTGCCTGAGAGGCACGTTGTCATATGGAACTCGATGATATCTTCTTATGTTGGCCGTAAAAAGAGTAAGGAAGCAATTGGGTTGTATGAGAAGATGGTATTGGATGGAGTTTTCCCAGATGAGTTCACGTTTTCGAGCGTTTTCAAGGCTTTTTGTAATCTGGGACTTGTGAATGAAGGGCGGAGGGCTCATGGGTTGGCAGTGGTTTTGGGTCTGGAGGTGTCGAACGTGTTTGTTGCTAGTGCTCTTGTTGATATGTACGTGAAGTTTGGGAGAATGAAGGATGGGCGGTTGGTGGCTAATCGTGTTGTGGATAAGGATGTTGTTTTGTTTACAACGTTGGTTGTTGGTTACTCTCAGCATGGTGATGATGGTGAAGCTCTAGCTGTTTTCAGGAACATGATCAAGGGAGGAATTAAGGCTAATGAATATACTTTTGCTAGCATCTTGATCTCTTGTGGGAATTTAGATGATTTATCTAATGGTAAAGTGGTCCATGGTCTTGCTATCAAGTCGGGTTCTGAACTTGCTGTGGCTTCACAGACATCACTTTTAACTATGTATGCTAGATGTGGATTGATTGATGATTCTCTAAGGGTTTTTAAAGGGTTTCTGAATCCAAACCAGGTAACTTGGACATCTCTTATTGTGGGTCTTGTAAGAAATGGAAGAGAAGAGTTGGCTTTGACAAAGTTCAGAAAAATGATCCGCAGTTCAATTGTTCCGAATTCTTTCACGTTATCTAGTGCTCTTCAAGCAAGCTCAAGCCTTGCTATGATCGATGAAGGAAAACAAATCCATGCTATGGTCACAAAATTTGGATTGGACAGAGACATATATGCTGGTGCTGCTCTCATTAACTTGTATGGGAAATGTGGAAGTACAGAAATGGCAAGGTCTGTTTTTGATGACTTAATCGAAATTGATGTGGTATCCATGAACTCCATGATATATGGTTATGCCCAGAATGGATTTGGACATGAAGCACTTCAGCTTTTCAATGGAATGAAAGACTTGGGACTTGGGCCAAATGAAGTAACAATTTTGAGTGTTCTCTTGGCGTGCAACAATTCAGGGTTGGTTCAAGAAGGCTGCCAAATCTTTGCTACTGTTACGAATAATCATAATATTGAGTTGACAGTAGATCACTATGCTTGCATGGTTGATTTGCTGGGGCGTTCTGGGAGACTTCAAGAGGCCGAAGCACTAGTGAAACAAGTCAGGAATCCAGATGTAGTATTATGGAGAACACTGATAAGTGCATGTAAACTTCACGGAGAGATCGAGATGGCAGAAAGAGCTTCTAATAAAATGCTTGAACTCGCTCCAGGTGACGGGGGGTCTCATATCCTGTTGACAAATGTTTATGCTTCAACCGGTAATTGGAGTCAAGTCATTGGGATGAAAAGCACACTGAGGGATATGAAATTCAAGAAGAATCCTGCAATGAGTTGGGTTGATGTAGACAGGGAGGTTCACACTTTCATGGCTGGAGATTTGTCGCATCCAAGATCGAGAGAGATAAATGAAATGTTAGAAAATTTGACTGACAGGGTAAAAATTTTGGGTTATATTCCTGATACAAGATTTGTGTTGCAAGATTTGGATGAGGAGCACAAGGAGAGGTCTTTGCACTCTCACAGTGAGAAGCTAGCTATTTCGTTTGCTCTGTTGATGAGTAGTAATAAGGATACTGTTATCAGGATATATAAGAACCTTAGAGTCTGTGGGGACTGTCATTCCTGGATAAAATTTGTCACCAAAGTTATCGGGAGAGAAATAATCGCTCGGGACGCCAAGAGATTCCATCATTTTAAGGATGGATTTTGTTCCTGTGGAGACTATTGGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0016070 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DYW_deaminase PPR PPR_2

Protein Analysis

716

Amino Acids

79.52

Weight (kDa)

8.07

Isoelectric Point (pI)

36.74

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PPR_2	PF13041	104 - 152	1.3e-13	PPR repeat family
PPR_2	PF13041	205 - 252	8.4e-08	PPR repeat family
PPR_2	PF13041	306 - 351	2.4e-07	PPR repeat family
PPR_2	PF13041	408 - 453	4.7e-09	PPR repeat family
PPR	PF01535	410 - 440	4.6e-07	PPR repeat
E_motif	PF20431	524 - 586	4.7e-14	E motif
Eplus_motif	PF20430	591 - 617	4.2e-09	E+ motif
DYW_deaminase	PF14432	622 - 715	3.2e-39	DYW family of nucleic acid deaminases

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0016599)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G65570
malus_domestica	MD15G1309800.v1.1
prunus_persica	Prupe.6G204100_v2.0.a1 Prupe.6G204100_v2.0.a1
rosa_chinensis	RchiOBHm_Chr2g0110721
rosa_laevigata	RLG00000017836
rosa_multiflora	Rmu_sc0000389.1_g000048
rosa_rugosa	Rorug02G0168100 Rorug02G0169300
rosa_samantha	Rh2AG221300 Rh2BG231500 Rh2CG223800 Rh2DG227500
rosa_wichuraiana	Rw2G017090

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	1102
AccI	GTMKAC	1 cut(s)	1761
AciI	CCGC	4 cut(s)	248, 478, 586, 1006
AclI	AACGTT	1 cut(s)	635
AclWI	GGATC	1 cut(s)	997
AcoI	YGGCCR	1 cut(s)	349
AcsI	RAATTY	8 cut(s)	28, 760, 1024, 1112, 1724, 1837, 1857, 2048
AcuI	CTGAAG	1 cut(s)	1271
AcyI	GRCGYC	1 cut(s)	2091
AfaI	GTAC	2 cut(s)	557, 1180
AfiI	CCNNNNNNNGG	3 cut(s)	1102, 1631, 1680
AflIII	ACRYGT	1 cut(s)	525
AgeI	ACCGGT	1 cut(s)	1673
AhdI	GACNNNNNGTC	1 cut(s)	1636
AhlI	ACTAGT	1 cut(s)	1504
AjnI	CCWGG	4 cut(s)	17, 921, 1624, 2039
AjuI	GAANNNNNNNTTGG	2 cut(s)	380, 412
AluBI	AGCT	9 cut(s)	238, 273, 677, 683, 1059, 1291, 1598, 1948, 1952
AluI	AGCT	9 cut(s)	238, 273, 677, 683, 1059, 1291, 1598, 1948, 1952
Alw21I	GWGCWC	3 cut(s)	544, 1048, 1914
Alw26I	GTCTC	4 cut(s)	1122, 1477, 1644, 2130
AlwI	GGATC	1 cut(s)	997
Ama87I	CYCGRG	1 cut(s)	2085
AoxI	GGCC	3 cut(s)	349, 1322, 1494
ApeKI	GCWGC	2 cut(s)	1145, 1389
ApoI	RAATTY	8 cut(s)	28, 760, 1024, 1112, 1724, 1837, 1857, 2048
AsiGI	ACCGGT	1 cut(s)	1673
Asp700I	GAANNNNTTC	3 cut(s)	92, 1028, 1284
AspS9I	GGNCC	2 cut(s)	790, 1322
AsuHPI	GGTGA	5 cut(s)	209, 674, 683, 1640, 2047
AsuNHI	GCTAGC	2 cut(s)	737, 1948
AvaI	CYCGRG	1 cut(s)	2085
AvaII	GGWCC	1 cut(s)	790
BanII	GRGCYC	1 cut(s)	487
BbsI	GAAGAC	2 cut(s)	70, 93
Bbv12I	GWGCWC	3 cut(s)	544, 1048, 1914
BbvI	GCAGC	2 cut(s)	1132, 1376
BccI	CCATC	8 cut(s)	163, 385, 395, 575, 662, 1579, 2111, 2112
BceAI	ACGGC	1 cut(s)	336
BcgI	CGANNNNNNTGC	2 cut(s)	220, 254
BciT130I	CCWGG	4 cut(s)	19, 923, 1626, 2041
BciVI	GTATCC	2 cut(s)	1240, 1981
BclI	TGATCA	2 cut(s)	198, 699
BcoDI	GTCTC	4 cut(s)	1122, 1477, 1644, 2130
BcuI	ACTAGT	1 cut(s)	1504
BfaI	CTAG	7 cut(s)	537, 680, 738, 864, 1041, 1505, 1949
BfmI	CTRYAG	1 cut(s)	225
BfuI	GTATCC	2 cut(s)	1240, 1981
BglI	GCCNNNNNGGC	1 cut(s)	307
BisI	GCNGC	2 cut(s)	1146, 1390
BlsI	GCNGC	2 cut(s)	1147, 1391
Bme1390I	CCNGG	4 cut(s)	19, 923, 1626, 2041
Bme18I	GGWCC	1 cut(s)	790
BmeRI	GACNNNNNGTC	1 cut(s)	1636
BmeT110I	CYCGRG	1 cut(s)	2085
BmgT120I	GGNCC	2 cut(s)	790, 1322
BmrFI	CCNGG	4 cut(s)	19, 923, 1626, 2041
BmsI	GCATC	3 cut(s)	235, 750, 1810
BmtI	GCTAGC	2 cut(s)	741, 1952
BpiI	GAAGAC	2 cut(s)	70, 93
BplI	GAGNNNNNCTC	2 cut(s)	113, 145
BpmI	CTGGAG	3 cut(s)	533, 1608, 1809
BpuEI	CTTGAG	1 cut(s)	1045
Bsa29I	ATCGAT	1 cut(s)	1077
BsaAI	YACGTR	1 cut(s)	559
BsaHI	GRCGYC	1 cut(s)	2091
BsaI	GGTCTC	1 cut(s)	1644
BsaJI	CCNNGG	2 cut(s)	17, 793
BsaWI	WCCGGW	2 cut(s)	206, 1673
Bsc4I	CCNNNNNNNGG	3 cut(s)	1102, 1631, 1680
Bse118I	RCCGGY	1 cut(s)	1673
Bse3DI	GCAATG	1 cut(s)	1749
BseBI	CCWGG	4 cut(s)	19, 923, 1626, 2041
BseCI	ATCGAT	1 cut(s)	1077
BseDI	CCNNGG	2 cut(s)	17, 793
BseGI	GGATG	7 cut(s)	406, 586, 622, 1704, 1801, 1909, 2122
BseLI	CCNNNNNNNGG	3 cut(s)	1102, 1631, 1680
BseMI	GCAATG	1 cut(s)	1749
BseMII	CTCAG	4 cut(s)	111, 294, 668, 1703
BseRI	GAGGAG	1 cut(s)	1922
BseXI	GCAGC	2 cut(s)	1132, 1376
BseYI	CCCAGC	1 cut(s)	1468
BshFI	GGCC	3 cut(s)	351, 1324, 1496
BshTI	ACCGGT	1 cut(s)	1673
BshVI	ATCGAT	1 cut(s)	1077
BsiHKAI	GWGCWC	3 cut(s)	544, 1048, 1914
BsiHKCI	CYCGRG	1 cut(s)	2085
BsiSI	CCGG	2 cut(s)	207, 1674
BslFI	GGGAC	4 cut(s)	474, 1329, 2042, 2102
BslI	CCNNNNNNNGG	3 cut(s)	1102, 1631, 1680
BsmAI	GTCTC	4 cut(s)	1122, 1477, 1644, 2130
BsmFI	GGGAC	4 cut(s)	474, 1329, 2042, 2102
BsmI	GAATGC	1 cut(s)	213
BsnI	GGCC	3 cut(s)	351, 1324, 1496
Bso31I	GGTCTC	1 cut(s)	1644
BsoBI	CYCGRG	1 cut(s)	2085
Bsp1286I	GDGCHC	4 cut(s)	487, 544, 1048, 1914
Bsp143I	GATC	8 cut(s)	198, 699, 747, 1002, 1074, 1441, 1578, 1808
Bsp19I	CCATGG	1 cut(s)	793
BspACI	CCGC	4 cut(s)	248, 478, 586, 1006
BspANI	GGCC	3 cut(s)	351, 1324, 1496
BspCNI	CTCAG	4 cut(s)	112, 295, 667, 1704
BspDI	ATCGAT	1 cut(s)	1077
BspOI	GCTAGC	2 cut(s)	741, 1952
BspPI	GGATC	1 cut(s)	997
BspQI	GCTCTTC	1 cut(s)	1053
BspTNI	GGTCTC	1 cut(s)	1644
BsrDI	GCAATG	1 cut(s)	1749
BsrFI	RCCGGY	1 cut(s)	1673
BssAI	RCCGGY	1 cut(s)	1673
BssECI	CCNNGG	2 cut(s)	17, 793
BssMI	GATC	8 cut(s)	198, 699, 747, 1002, 1074, 1441, 1578, 1808
BssNI	GRCGYC	1 cut(s)	2091
BssT1I	CCWWGG	1 cut(s)	793
Bst2UI	CCWGG	4 cut(s)	19, 923, 1626, 2041
Bst4CI	ACNGT	6 cut(s)	288, 1408, 1438, 1940, 1993, 2033
Bst6I	CTCTTC	4 cut(s)	136, 961, 966, 1053
BstACI	GRCGYC	1 cut(s)	2091
BstBAI	YACGTR	1 cut(s)	559
BstC8I	GCNNGC	7 cut(s)	250, 280, 739, 1057, 1360, 1453, 1950
BstDEI	CTNAG	7 cut(s)	68, 120, 303, 654, 890, 1712, 2015
BstDSI	CCRYGG	1 cut(s)	793
BstF5I	GGATG	7 cut(s)	406, 586, 622, 1704, 1801, 1909, 2122
BstKTI	GATC	8 cut(s)	201, 702, 750, 1005, 1077, 1444, 1581, 1811
BstMAI	GTCTC	4 cut(s)	1122, 1477, 1644, 2130
BstMBI	GATC	8 cut(s)	198, 699, 747, 1002, 1074, 1441, 1578, 1808
BstMWI	GCNNNNNNNGC	6 cut(s)	279, 307, 1052, 1145, 1595, 2090
BstNI	CCWGG	4 cut(s)	19, 923, 1626, 2041
BstNSI	RCATGY	1 cut(s)	1563
BstSCI	CCNGG	4 cut(s)	17, 921, 1624, 2039
BstSFI	CTRYAG	1 cut(s)	225
BstV1I	GCAGC	2 cut(s)	1132, 1376
BstV2I	GAAGAC	2 cut(s)	70, 93
Bsu15I	ATCGAT	1 cut(s)	1077
BsuI	GTATCC	2 cut(s)	1240, 1981
BsuRI	GGCC	3 cut(s)	351, 1324, 1496
BsuTUI	ATCGAT	1 cut(s)	1077
BtgI	CCRYGG	1 cut(s)	793
BtsCI	GGATG	7 cut(s)	406, 586, 622, 1704, 1801, 1909, 2122
BtsI	GCAGTG	1 cut(s)	504
BtsIMutI	CAGTG	4 cut(s)	504, 1547, 1709, 1945
Cac8I	GCNNGC	7 cut(s)	250, 280, 739, 1057, 1360, 1453, 1950
Cfr10I	RCCGGY	1 cut(s)	1673
Cfr13I	GGNCC	2 cut(s)	790, 1322
ClaI	ATCGAT	1 cut(s)	1077
CseI	GACGC	1 cut(s)	2099
CsiI	ACCWGGT	1 cut(s)	921
Csp6I	GTAC	2 cut(s)	556, 1179
CspAI	ACCGGT	1 cut(s)	1673
CviQI	GTAC	2 cut(s)	556, 1179
DdeI	CTNAG	7 cut(s)	68, 120, 303, 654, 890, 1712, 2015
DpnI	GATC	8 cut(s)	200, 701, 749, 1004, 1076, 1443, 1580, 1810
DpnII	GATC	8 cut(s)	198, 699, 747, 1002, 1074, 1441, 1578, 1808
DraI	TTTAAA	1 cut(s)	901
DriI	GACNNNNNGTC	1 cut(s)	1636
EaeI	YGGCCR	1 cut(s)	349
Eam1104I	CTCTTC	4 cut(s)	136, 961, 966, 1053
Eam1105I	GACNNNNNGTC	1 cut(s)	1636
EarI	CTCTTC	4 cut(s)	136, 961, 966, 1053
EciI	GGCGGA	1 cut(s)	493
Eco130I	CCWWGG	1 cut(s)	793
Eco24I	GRGCYC	1 cut(s)	487
Eco31I	GGTCTC	1 cut(s)	1644
Eco32I	GATATC	1 cut(s)	336
Eco47I	GGWCC	1 cut(s)	790
Eco57I	CTGAAG	1 cut(s)	1271
Eco88I	CYCGRG	1 cut(s)	2085
EcoRI	GAATTC	1 cut(s)	1024
EcoRII	CCWGG	4 cut(s)	17, 921, 1624, 2039
EcoRV	GATATC	1 cut(s)	336
EcoT14I	CCWWGG	1 cut(s)	793
EcoT22I	ATGCAT	1 cut(s)	152
EcoT38I	GRGCYC	1 cut(s)	487
ErhI	CCWWGG	1 cut(s)	793
FaqI	GGGAC	4 cut(s)	474, 1329, 2042, 2102
FauI	CCCGC	1 cut(s)	241
FauNDI	CATATG	2 cut(s)	195, 320
FbaI	TGATCA	2 cut(s)	198, 699
FblI	GTMKAC	1 cut(s)	1761
Fnu4HI	GCNGC	2 cut(s)	1146, 1390
FokI	GGATG	7 cut(s)	413, 593, 629, 1711, 1788, 1916, 2129
FriOI	GRGCYC	1 cut(s)	487
Fsp4HI	GCNGC	2 cut(s)	1146, 1390
FspBI	CTAG	7 cut(s)	537, 680, 738, 864, 1041, 1505, 1949
GluI	GCNGC	2 cut(s)	1146, 1390
GsaI	CCCAGC	1 cut(s)	1472
GsuI	CTGGAG	3 cut(s)	533, 1608, 1809
HaeIII	GGCC	3 cut(s)	351, 1324, 1496
HapII	CCGG	2 cut(s)	207, 1674
HgaI	GACGC	1 cut(s)	2099
Hin1I	GRCGYC	1 cut(s)	2091
HincII	GTYRAC	2 cut(s)	1434, 1653
HindII	GTYRAC	2 cut(s)	1434, 1653
HinfI	GANTC	8 cut(s)	139, 884, 913, 1522, 1684, 1735, 2019, 2100
HpaII	CCGG	2 cut(s)	207, 1674
HphI	GGTGA	5 cut(s)	209, 674, 683, 1640, 2047
Hpy166II	GTNNAC	7 cut(s)	423, 630, 1434, 1565, 1653, 1762, 1774
Hpy188I	TCNGA	6 cut(s)	138, 189, 820, 912, 995, 1023
Hpy8I	GTNNAC	7 cut(s)	423, 630, 1434, 1565, 1653, 1762, 1774
Hpy99I	CGWCG	1 cut(s)	245
HpyAV	CCTTC	4 cut(s)	467, 571, 1076, 1379
HpyCH4III	ACNGT	6 cut(s)	288, 1408, 1438, 1940, 1993, 2033
HpyCH4IV	ACGT	7 cut(s)	174, 312, 425, 525, 558, 635, 1034
HpyCH4V	TGCA	9 cut(s)	150, 213, 278, 1362, 1455, 1559, 1742, 1894, 1930
HpyF10VI	GCNNNNNNNGC	6 cut(s)	279, 307, 1052, 1145, 1595, 2090
HpyF3I	CTNAG	7 cut(s)	68, 120, 303, 654, 890, 1712, 2015
HpySE526I	ACGT	7 cut(s)	174, 312, 425, 525, 558, 635, 1034
Hsp92I	GRCGYC	1 cut(s)	2091
Ksp22I	TGATCA	2 cut(s)	198, 699
Kzo9I	GATC	8 cut(s)	198, 699, 747, 1002, 1074, 1441, 1578, 1808
LguI	GCTCTTC	1 cut(s)	1053
LmnI	GCTCC	3 cut(s)	264, 1627, 1909
Lsp1109I	GCAGC	2 cut(s)	1132, 1376
LweI	GCATC	3 cut(s)	235, 750, 1810
MabI	ACCWGGT	1 cut(s)	921
MaeI	CTAG	7 cut(s)	537, 680, 738, 864, 1041, 1505, 1949
MaeII	ACGT	7 cut(s)	174, 312, 425, 525, 558, 635, 1034
MaeIII	GTNAC	7 cut(s)	647, 925, 1105, 1333, 1408, 1628, 2053
MalI	GATC	8 cut(s)	200, 701, 749, 1004, 1076, 1443, 1580, 1810
MboI	GATC	8 cut(s)	198, 699, 747, 1002, 1074, 1441, 1578, 1808
MfeI	CAATTG	2 cut(s)	372, 1014
MhlI	GDGCHC	4 cut(s)	487, 544, 1048, 1914
MlyI	GAGTC	2 cut(s)	1693, 2028
MmeI	TCCRAC	1 cut(s)	157
Mph1103I	ATGCAT	1 cut(s)	152
MroXI	GAANNNNTTC	3 cut(s)	92, 1028, 1284
MseI	TTAA	6 cut(s)	714, 851, 900, 1155, 1211, 2112
MslI	CAYNNNNRTG	3 cut(s)	663, 1697, 1781
MspI	CCGG	2 cut(s)	207, 1674
MspR9I	CCNGG	4 cut(s)	19, 923, 1626, 2041
MunI	CAATTG	2 cut(s)	372, 1014
Mva1269I	GAATGC	1 cut(s)	213
MvaI	CCWGG	4 cut(s)	19, 923, 1626, 2041
MwoI	GCNNNNNNNGC	6 cut(s)	279, 307, 1052, 1145, 1595, 2090
NcoI	CCATGG	1 cut(s)	793
NdeI	CATATG	2 cut(s)	195, 320
NdeII	GATC	8 cut(s)	198, 699, 747, 1002, 1074, 1441, 1578, 1808
NheI	GCTAGC	2 cut(s)	737, 1948
NmuCI	GTSAC	3 cut(s)	1105, 1628, 2053
NsiI	ATGCAT	1 cut(s)	152
NspI	RCATGY	1 cut(s)	1563
PciSI	GCTCTTC	1 cut(s)	1053
PcsI	WCGNNNNNNNCGW	1 cut(s)	1578
PctI	GAATGC	1 cut(s)	213
PdmI	GAANNNNTTC	3 cut(s)	92, 1028, 1284
PfeI	GAWTC	6 cut(s)	139, 884, 913, 1522, 1735, 2100
PflMI	CCANNNNNTGG	1 cut(s)	1102
PfoI	TCCNGGA	1 cut(s)	2039
PinAI	ACCGGT	1 cut(s)	1673
PkrI	GCNGC	2 cut(s)	1147, 1391
PleI	GAGTC	2 cut(s)	1692, 2027
PpsI	GAGTC	2 cut(s)	1692, 2027
Ppu21I	YACGTR	1 cut(s)	559
Psp1406I	AACGTT	1 cut(s)	635
Psp6I	CCWGG	4 cut(s)	17, 921, 1624, 2039
PspFI	CCCAGC	1 cut(s)	1468
PspGI	CCWGG	4 cut(s)	17, 921, 1624, 2039
PspPI	GGNCC	2 cut(s)	790, 1322
RsaI	GTAC	2 cut(s)	557, 1180
RsaNI	GTAC	2 cut(s)	556, 1179
RseI	CAYNNNNRTG	3 cut(s)	663, 1697, 1781
SapI	GCTCTTC	1 cut(s)	1053
SaqAI	TTAA	6 cut(s)	714, 851, 900, 1155, 1211, 2112
SatI	GCNGC	2 cut(s)	1146, 1390
Sau3AI	GATC	8 cut(s)	198, 699, 747, 1002, 1074, 1441, 1578, 1808
Sau96I	GGNCC	2 cut(s)	790, 1322
SchI	GAGTC	2 cut(s)	1693, 2028
ScrFI	CCNGG	4 cut(s)	19, 923, 1626, 2041
SduI	GDGCHC	4 cut(s)	487, 544, 1048, 1914
SexAI	ACCWGGT	1 cut(s)	921
SfaNI	GCATC	3 cut(s)	235, 750, 1810
SfcI	CTRYAG	1 cut(s)	225
SinI	GGWCC	1 cut(s)	790
SmiMI	CAYNNNNRTG	3 cut(s)	663, 1697, 1781
SmlI	CTYRAG	1 cut(s)	1060
SmoI	CTYRAG	1 cut(s)	1060
SpeI	ACTAGT	1 cut(s)	1504
SsiI	CCGC	4 cut(s)	248, 478, 586, 1006
SspI	AATATT	1 cut(s)	1426
SspMI	CTAG	7 cut(s)	537, 680, 738, 864, 1041, 1505, 1949
StyD4I	CCNGG	4 cut(s)	17, 921, 1624, 2039
StyI	CCWWGG	1 cut(s)	793
TaaI	ACNGT	6 cut(s)	288, 1408, 1438, 1940, 1993, 2033
TaiI	ACGT	7 cut(s)	177, 315, 428, 528, 561, 638, 1037
TaqI	TCGA	8 cut(s)	243, 329, 431, 521, 1077, 1215, 1581, 1811
TatI	WGTACW	1 cut(s)	1178
TfiI	GAWTC	6 cut(s)	139, 884, 913, 1522, 1735, 2100
Tru1I	TTAA	6 cut(s)	714, 851, 900, 1155, 1211, 2112
Tru9I	TTAA	6 cut(s)	714, 851, 900, 1155, 1211, 2112
TscAI	CASTG	4 cut(s)	504, 1554, 1716, 1945
TseFI	GTSAC	3 cut(s)	1105, 1628, 2053
TseI	GCWGC	2 cut(s)	1145, 1389
Tsp45I	GTSAC	3 cut(s)	1105, 1628, 2053
TspGWI	ACGGA	1 cut(s)	1587
TspRI	CASTG	4 cut(s)	504, 1554, 1716, 1945
Van91I	CCANNNNNTGG	1 cut(s)	1102
VpaK11BI	GGWCC	1 cut(s)	790
XapI	RAATTY	8 cut(s)	28, 760, 1024, 1112, 1724, 1837, 1857, 2048
XceI	RCATGY	1 cut(s)	1563
XcmI	CCANNNNNNNNNTGG	1 cut(s)	1268
XmiI	GTMKAC	1 cut(s)	1761
XmnI	GAANNNNTTC	3 cut(s)	92, 1028, 1284
XspI	CTAG	7 cut(s)	537, 680, 738, 864, 1041, 1505, 1949
Zsp2I	ATGCAT	1 cut(s)	152

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.