Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr15

Orthogroup ID

OG0019600

Physical Location & Seq

Genomic Coordinates Reverse (-)

49559158 .. 49563540

Gene Structure 4383 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD15G1395900.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2220 bp

ATGTTGCTCCATAAATCAGGGCCCCCAAAACCTGAGTGTCCTCTTTCCATTCAACTTTTCTACCCTCTGGTTTCCAATGGTCAAGTAAAAGAACCCAGTAAGTTGCCTCAACCCGCACCTACTCCACAGCAGTGCTCTCAACTTTGCCATCCCAACTATTCTCTCGACAATGTTGCCTATACAAAACTTGTCCAACACGCTACCAAAACTGGGTCTTCGCTCCACGGCAAACTTGCCCACGCCCACATCATCAAAACCTCCTTTAAGCCCTGTATGTTTTTACTCAACAATCTTCTCACCATGTATTCCAGGCTCGGAGAATTCGACAGTGCACGCCACCTGTTCGATAGAATGCCTAAGCGGAATCTCATTTCGTACAACTCCTTGATTTCTGGATATAACGAGGTGGGTCTGTTTGATAAGGCCATGGGTGTTTTTAACGAAGCAAAAATGGCTGGTTTAAAACTTGATAGGTTTACTTATGCAGGTGCTTTGAGTGTGTGTGGTCAAACCGGTGATTTTGAGCTGGGTAAGCTGGTTCATGGATTGATAGTCGTCAACGCGTTGGGCTCAGAAGTTGTTCTGACCAATTCTCTTATTGATATGTACTCCAAGTGTGGCCGAGTTGATCATGCTAGGAATTTGTTTCAGAGTTCGGATAACTTGGACCTTGTCTCATGGAATTCCTTGATTGCTTGCTATGCTCGAATTGGTGCTAACGAGGAAACATTGACCACTCTAGTGAAAATGCATCAGTGTGGGTTGAGCTTGAATACCTATACACTGGGGAGTGCCCTCAAGGCGTGTGGCAAAATTCTTGACAATTCAGGACTATTTGGGAAAATACTTCATGGATACAATGTCAAACTGGGGTTGGACTTAGATGTTGCAGTAGGAACGGCATTGCTTGATATGTATGCAAAGACTTGTGGCTTAGGTGAGGCGATACAAATATTCAAATTCATGCCTTACCGCAATGTTGTTTTGTATAATGCCATGATTGCGGGGTTCCTCCAAATAGAGACCTTTTCTTATGGACATGCAAATGAAGTGTTTAATCTTCTATCAGAGATGCAAAGGCTAGGAATCAAGCCATCAACATTTACTTTCTCAATCATATTGAGAGCTTGTAAATCGGTTGAAGCTCTTGAGTACGGGAAACAAGTTCACACTCAAGTCTACAAGTATGACCTACAGGGAGATGAATTCATTGGAAGTGGGCTTATTGATGTCTATTGTTCTTTGGGTTTATCCAATTATGCGTTGAGATGCTTTAACTTAACTCCTAGGCTAGATATTGTCTCGTGGACATCCATGGTTGCAGGTTATATCCAAAATGGGGAAATTGAAAGTGCATTTGATTTATTTTATAGACTCCTGGAATCTGGAATGAAGCCTGATGAATTCATAATATCAAGCATGCTGGGTGCGTGTGCTGATTTGGCTGCAGCAAGATCTGGAGAGCAGATCCAAGGATATGCTGTAAAAGCTGGATTTGGGAAATTCACTGTTGTTCAAAATTCACAGATATGCATGTATGCAAAAGCTGGAGATATTGATTCTGCTAATTTTTCCTTTACAGAGATAGAGAATCCTGATGTGGTTTCCTGGTCCGTGATGATATGTAGCAAAGCACAACATGGATGTGCAAATGAAGCCTTGAATCTTTTTGAGTTGATGAAGACTTGTGGAATTGCACCCAACCACATCACTTTCCTTGGAGTTCTGACTGCATGCAGTCATGGAGGGCTAGTAGAAGAAGGTTTACGATATTTTGAAACAATGAAGAAAGATTATGGCATGTCAACCAATGTAGAGCACTGTGCCTGCGTTGTTGATCTCCTAGGTCGTGCAGGAAGGCTAGCAGATGCTGAGAAGTTCATTTTCAACTCATCTTTTGAGGATAATCCAGTTATGTGGCGAGCCTTGTTGAGTGCTTGCAGGGTTTATATGGACACTGTTGCTGCAAAACGTGTTGCAGAAAAACTAATTGATCTTGAACCTCAAGCTGCTGCATCATATGTTCTTCTGTACAACATTTACAATGATGCTGCGATAGAGTTACCGGCCAAAAGAATTAGGGAACTGATGAAAAATCGAGGAGTTAAGAAGGAACCTGGTCTAAGTTGGATAGAGGTAGGAAACAAAGTTCATTCTTTTGTTAGTGGCGATCGGTCTCACCAAATGGTTCAATTAATATATACTCGGTTGGTTGCGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000959 GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0016070 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1900864 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DYW_deaminase PPR PPR_2

Protein Analysis

740

Amino Acids

81.54

Weight (kDa)

7.0

Isoelectric Point (pI)

36.68

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PPR_2	PF13041	122 - 164	1.9e-07	PPR repeat family
PPR_2	PF13041	325 - 377	1.6e-10	PPR repeat family
PPR_2	PF13041	432 - 479	3.3e-08	PPR repeat family
PPR	PF01535	434 - 463	5.3e-06	PPR repeat
PPR_2	PF13041	532 - 580	9e-09	PPR repeat family
E_motif	PF20431	653 - 712	7.7e-14	E motif

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0019600)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G13880
malus_domestica	MD15G1395900.v1.1 MD15G1396200.v1.1 MD15G1407400.v1.1
prunus_persica	Prupe.1G554200_v2.0.a1
pyrus_communis	pycom15g35640 pycom15g36360

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	476
Acc36I	ACCTGC	2 cut(s)	476, 1313
AccI	GTMKAC	1 cut(s)	1179
AccII	CGCG	1 cut(s)	563
AciI	CCGC	4 cut(s)	114, 361, 973, 1004
AclWI	GGATC	1 cut(s)	1462
AcoI	YGGCCR	2 cut(s)	619, 2067
AcsI	RAATTY	9 cut(s)	320, 640, 682, 813, 959, 1205, 1403, 1502, 1519
AfaI	GTAC	4 cut(s)	377, 608, 1154, 2033
AfiI	CCNNNNNNNGG	2 cut(s)	210, 1339
AflIII	ACRYGT	2 cut(s)	561, 1972
AgeI	ACCGGT	1 cut(s)	512
AjnI	CCWGG	4 cut(s)	308, 1377, 1607, 2116
AleI	CACNNNNGTG	2 cut(s)	130, 740
AloI	GAACNNNNNNTCC	2 cut(s)	2133, 2165
AluBI	AGCT	8 cut(s)	526, 535, 768, 1127, 1145, 1490, 1547, 2009
AluI	AGCT	8 cut(s)	526, 535, 768, 1127, 1145, 1490, 1547, 2009
Alw21I	GWGCWC	3 cut(s)	137, 334, 1821
Alw26I	GTCTC	4 cut(s)	679, 1016, 1306, 2181
Alw44I	GTGCAC	1 cut(s)	330
AlwI	GGATC	1 cut(s)	1462
AlwNI	CAGNNNCTG	1 cut(s)	1871
AoxI	GGCC	4 cut(s)	20, 423, 619, 2067
ApaI	GGGCCC	1 cut(s)	24
ApaLI	GTGCAC	1 cut(s)	330
ApeKI	GCWGC	6 cut(s)	1445, 1448, 1964, 2009, 2012, 2051
ApoI	RAATTY	9 cut(s)	320, 640, 682, 813, 959, 1205, 1403, 1502, 1519
AseI	ATTAAT	1 cut(s)	2195
AsiGI	ACCGGT	1 cut(s)	512
Asp700I	GAANNNNTTC	1 cut(s)	579
AspA2I	CCTAGG	2 cut(s)	1286, 1843
AspS9I	GGNCC	4 cut(s)	20, 21, 667, 1611
AsuHPI	GGTGA	4 cut(s)	289, 527, 950, 2171
AsuNHI	GCTAGC	1 cut(s)	1861
AvaII	GGWCC	2 cut(s)	667, 1611
AvrII	CCTAGG	2 cut(s)	1286, 1843
BaeGI	GKGCMC	3 cut(s)	24, 334, 796
BanII	GRGCYC	2 cut(s)	24, 572
BarI	GAAGNNNNNNTAC	2 cut(s)	1749, 1781
BauI	CACGAG	1 cut(s)	1303
BbsI	GAAGAC	2 cut(s)	207, 1688
Bbv12I	GWGCWC	3 cut(s)	137, 334, 1821
BbvI	GCAGC	6 cut(s)	1432, 1460, 1951, 1996, 1999, 2038
BccI	CCATC	2 cut(s)	156, 1102
BceAI	ACGGC	2 cut(s)	241, 915
BcgI	CGANNNNNNTGC	2 cut(s)	155, 189
BciT130I	CCWGG	4 cut(s)	310, 1379, 1609, 2118
BciVI	GTATCC	1 cut(s)	848
BclI	TGATCA	1 cut(s)	628
BcoDI	GTCTC	4 cut(s)	679, 1016, 1306, 2181
BfaI	CTAG	8 cut(s)	636, 740, 1082, 1287, 1292, 1751, 1844, 1862
BfmI	CTRYAG	2 cut(s)	1193, 1446
BfuAI	ACCTGC	2 cut(s)	476, 1313
BfuI	GTATCC	1 cut(s)	848
BglI	GCCNNNNNGGC	1 cut(s)	800
BglII	AGATCT	1 cut(s)	1454
BisI	GCNGC	6 cut(s)	1446, 1449, 1965, 2010, 2013, 2052
BlnI	CCTAGG	2 cut(s)	1286, 1843
BlsI	GCNGC	6 cut(s)	1447, 1450, 1966, 2011, 2014, 2053
Bme1390I	CCNGG	4 cut(s)	310, 1379, 1609, 2118
Bme18I	GGWCC	2 cut(s)	667, 1611
BmgT120I	GGNCC	4 cut(s)	20, 21, 667, 1611
BmiI	GGNNCC	4 cut(s)	22, 23, 1010, 2115
BmrFI	CCNGG	4 cut(s)	310, 1379, 1609, 2118
BmrI	ACTGGG	4 cut(s)	90, 219, 794, 878
BmsI	GCATC	6 cut(s)	760, 1062, 1259, 1858, 2024, 2038
BmtI	GCTAGC	1 cut(s)	1865
BmuI	ACTGGG	4 cut(s)	90, 219, 794, 878
BpiI	GAAGAC	2 cut(s)	207, 1688
BpmI	CTGGAG	2 cut(s)	1479, 1569
Bpu10I	CCTNAGC	2 cut(s)	357, 934
BpuEI	CTTGAG	4 cut(s)	782, 1158, 1169, 1989
BsaI	GGTCTC	2 cut(s)	1016, 2181
BsaJI	CCNNGG	7 cut(s)	223, 426, 1286, 1314, 1471, 1717, 1843
BsaWI	WCCGGW	1 cut(s)	512
BsaXI	ACNNNNNCTCC	2 cut(s)	1737, 1767
Bsc4I	CCNNNNNNNGG	2 cut(s)	210, 1339
Bse118I	RCCGGY	2 cut(s)	512, 2065
Bse1I	ACTGG	5 cut(s)	96, 214, 789, 873, 1910
Bse3DI	GCAATG	2 cut(s)	902, 982
BseBI	CCWGG	4 cut(s)	310, 1379, 1609, 2118
BseDI	CCNNGG	7 cut(s)	223, 426, 1286, 1314, 1471, 1717, 1843
BseGI	GGATG	3 cut(s)	148, 1310, 1649
BseLI	CCNNNNNNNGG	2 cut(s)	210, 1339
BseMI	GCAATG	2 cut(s)	902, 982
BseMII	CTCAG	3 cut(s)	24, 585, 1863
BseNI	ACTGG	5 cut(s)	96, 214, 789, 873, 1910
BseRI	GAGGAG	1 cut(s)	2115
BseSI	GKGCMC	3 cut(s)	24, 334, 796
BseXI	GCAGC	6 cut(s)	1432, 1460, 1951, 1996, 1999, 2038
BseYI	CCCAGC	2 cut(s)	526, 1423
BsgI	GTGCAG	1 cut(s)	1872
Bsh1236I	CGCG	1 cut(s)	563
Bsh1285I	CGRYCG	1 cut(s)	2173
BshFI	GGCC	4 cut(s)	22, 425, 621, 2069
BshTI	ACCGGT	1 cut(s)	512
BsiEI	CGRYCG	1 cut(s)	2173
BsiHKAI	GWGCWC	3 cut(s)	137, 334, 1821
BsiSI	CCGG	2 cut(s)	513, 2066
BslI	CCNNNNNNNGG	2 cut(s)	210, 1339
BsmAI	GTCTC	4 cut(s)	679, 1016, 1306, 2181
BsmI	GAATGC	1 cut(s)	357
BsnI	GGCC	4 cut(s)	22, 425, 621, 2069
Bso31I	GGTCTC	2 cut(s)	1016, 2181
Bsp120I	GGGCCC	1 cut(s)	20
Bsp1286I	GDGCHC	6 cut(s)	24, 137, 334, 572, 796, 1821
Bsp1407I	TGTACA	1 cut(s)	2031
Bsp143I	GATC	6 cut(s)	628, 1454, 1467, 1837, 1993, 2170
Bsp19I	CCATGG	2 cut(s)	426, 1314
BspACI	CCGC	4 cut(s)	114, 361, 973, 1004
BspANI	GGCC	4 cut(s)	22, 425, 621, 2069
BspCNI	CTCAG	3 cut(s)	25, 584, 1864
BspFNI	CGCG	1 cut(s)	563
BspLI	GGNNCC	4 cut(s)	22, 23, 1010, 2115
BspMAI	CTGCAG	1 cut(s)	1450
BspMI	ACCTGC	2 cut(s)	476, 1313
BspOI	GCTAGC	1 cut(s)	1865
BspPI	GGATC	1 cut(s)	1462
BspTNI	GGTCTC	2 cut(s)	1016, 2181
BsrDI	GCAATG	2 cut(s)	902, 982
BsrFI	RCCGGY	2 cut(s)	512, 2065
BsrGI	TGTACA	1 cut(s)	2031
BsrI	ACTGG	5 cut(s)	96, 214, 789, 873, 1910
BssAI	RCCGGY	2 cut(s)	512, 2065
BssECI	CCNNGG	7 cut(s)	223, 426, 1286, 1314, 1471, 1717, 1843
BssMI	GATC	6 cut(s)	628, 1454, 1467, 1837, 1993, 2170
BssSI	CACGAG	1 cut(s)	1303
BssT1I	CCWWGG	6 cut(s)	426, 1286, 1314, 1471, 1717, 1843
Bst2BI	CACGAG	1 cut(s)	1303
Bst2UI	CCWGG	4 cut(s)	310, 1379, 1609, 2118
Bst4CI	ACNGT	4 cut(s)	329, 1510, 1823, 1960
BstAUI	TGTACA	1 cut(s)	2031
BstC8I	GCNNGC	8 cut(s)	334, 697, 1421, 1735, 1828, 1863, 1923, 1939
BstDEI	CTNAG	7 cut(s)	33, 357, 571, 880, 934, 1872, 2123
BstDSI	CCRYGG	3 cut(s)	223, 426, 1314
BstF5I	GGATG	3 cut(s)	148, 1310, 1649
BstFNI	CGCG	1 cut(s)	563
BstKTI	GATC	6 cut(s)	631, 1457, 1470, 1840, 1996, 2173
BstMAI	GTCTC	4 cut(s)	679, 1016, 1306, 2181
BstMBI	GATC	6 cut(s)	628, 1454, 1467, 1837, 1993, 2170
BstMCI	CGRYCG	1 cut(s)	2173
BstMWI	GCNNNNNNNGC	8 cut(s)	452, 532, 701, 800, 1001, 1442, 1487, 1655
BstNI	CCWGG	4 cut(s)	310, 1379, 1609, 2118
BstNSI	RCATGY	5 cut(s)	1043, 1423, 1537, 1737, 1804
BstSCI	CCNGG	4 cut(s)	308, 1377, 1607, 2116
BstSFI	CTRYAG	2 cut(s)	1193, 1446
BstSLI	GKGCMC	3 cut(s)	24, 334, 796
BstUI	CGCG	1 cut(s)	563
BstV1I	GCAGC	6 cut(s)	1432, 1460, 1951, 1996, 1999, 2038
BstV2I	GAAGAC	2 cut(s)	207, 1688
BstX2I	RGATCY	2 cut(s)	1454, 1467
BstXI	CCANNNNNNTGG	1 cut(s)	1917
BstYI	RGATCY	2 cut(s)	1454, 1467
BsuI	GTATCC	1 cut(s)	848
BsuRI	GGCC	4 cut(s)	22, 425, 621, 2069
BtgI	CCRYGG	3 cut(s)	223, 426, 1314
BtsCI	GGATG	3 cut(s)	148, 1310, 1649
BtsI	GCAGTG	1 cut(s)	137
BtsIMutI	CAGTG	7 cut(s)	137, 334, 761, 782, 1506, 1819, 1956
BveI	ACCTGC	2 cut(s)	476, 1313
Cac8I	GCNNGC	8 cut(s)	334, 697, 1421, 1735, 1828, 1863, 1923, 1939
CaiI	CAGNNNCTG	1 cut(s)	1871
Cfr10I	RCCGGY	2 cut(s)	512, 2065
Cfr13I	GGNCC	4 cut(s)	20, 21, 667, 1611
CsiI	ACCWGGT	1 cut(s)	2116
Csp6I	GTAC	4 cut(s)	376, 607, 1153, 2032
CspAI	ACCGGT	1 cut(s)	512
CspCI	CAANNNNNGTGG	2 cut(s)	787, 822
CviQI	GTAC	4 cut(s)	376, 607, 1153, 2032
DdeI	CTNAG	7 cut(s)	33, 357, 571, 880, 934, 1872, 2123
DpnI	GATC	6 cut(s)	630, 1456, 1469, 1839, 1995, 2172
DpnII	GATC	6 cut(s)	628, 1454, 1467, 1837, 1993, 2170
DraI	TTTAAA	1 cut(s)	462
EaeI	YGGCCR	2 cut(s)	619, 2067
Eco130I	CCWWGG	6 cut(s)	426, 1286, 1314, 1471, 1717, 1843
Eco24I	GRGCYC	2 cut(s)	24, 572
Eco31I	GGTCTC	2 cut(s)	1016, 2181
Eco47I	GGWCC	2 cut(s)	667, 1611
EcoO109I	RGGNCCY	2 cut(s)	20, 21
EcoRI	GAATTC	4 cut(s)	320, 682, 1205, 1403
EcoRII	CCWGG	4 cut(s)	308, 1377, 1607, 2116
EcoT14I	CCWWGG	6 cut(s)	426, 1286, 1314, 1471, 1717, 1843
EcoT22I	ATGCAT	2 cut(s)	753, 1535
EcoT38I	GRGCYC	2 cut(s)	24, 572
ErhI	CCWWGG	6 cut(s)	426, 1286, 1314, 1471, 1717, 1843
FauI	CCCGC	2 cut(s)	121, 997
FauNDI	CATATG	1 cut(s)	2020
FbaI	TGATCA	1 cut(s)	628
FblI	GTMKAC	1 cut(s)	1179
Fnu4HI	GCNGC	6 cut(s)	1446, 1449, 1965, 2010, 2013, 2052
FokI	GGATG	3 cut(s)	135, 1297, 1656
FriOI	GRGCYC	2 cut(s)	24, 572
Fsp4HI	GCNGC	6 cut(s)	1446, 1449, 1965, 2010, 2013, 2052
FspBI	CTAG	8 cut(s)	636, 740, 1082, 1287, 1292, 1751, 1844, 1862
GluI	GCNGC	6 cut(s)	1446, 1449, 1965, 2010, 2013, 2052
GsaI	CCCAGC	2 cut(s)	530, 1427
GsuI	CTGGAG	2 cut(s)	1479, 1569
HaeIII	GGCC	4 cut(s)	22, 425, 621, 2069
HapII	CCGG	2 cut(s)	513, 2066
HincII	GTYRAC	2 cut(s)	559, 1806
HindII	GTYRAC	2 cut(s)	559, 1806
HinfI	GANTC	7 cut(s)	364, 1086, 1374, 1382, 1559, 1591, 1663
HpaII	CCGG	2 cut(s)	513, 2066
HphI	GGTGA	4 cut(s)	289, 527, 950, 2171
Hpy166II	GTNNAC	8 cut(s)	332, 477, 559, 1168, 1180, 1308, 1766, 1806
Hpy188I	TCNGA	7 cut(s)	317, 574, 585, 651, 658, 1069, 1728
Hpy188III	TCNNGA	9 cut(s)	164, 393, 818, 828, 1148, 1386, 1458, 1595, 1997
Hpy8I	GTNNAC	8 cut(s)	332, 477, 559, 1168, 1180, 1308, 1766, 1806
HpyAV	CCTTC	3 cut(s)	1754, 1851, 2104
HpyCH4III	ACNGT	4 cut(s)	329, 1510, 1823, 1960
HpyCH4IV	ACGT	1 cut(s)	1972
HpyF10VI	GCNNNNNNNGC	8 cut(s)	452, 532, 701, 800, 1001, 1442, 1487, 1655
HpyF3I	CTNAG	7 cut(s)	33, 357, 571, 880, 934, 1872, 2123
HpySE526I	ACGT	1 cut(s)	1972
Ksp22I	TGATCA	1 cut(s)	628
Kzo9I	GATC	6 cut(s)	628, 1454, 1467, 1837, 1993, 2170
LmnI	GCTCC	2 cut(s)	12, 225
Lsp1109I	GCAGC	6 cut(s)	1432, 1460, 1951, 1996, 1999, 2038
LweI	GCATC	6 cut(s)	760, 1062, 1259, 1858, 2024, 2038
MabI	ACCWGGT	1 cut(s)	2116
MaeI	CTAG	8 cut(s)	636, 740, 1082, 1287, 1292, 1751, 1844, 1862
MaeII	ACGT	1 cut(s)	1972
MaeIII	GTNAC	1 cut(s)	2061
MalI	GATC	6 cut(s)	630, 1456, 1469, 1839, 1995, 2172
MboI	GATC	6 cut(s)	628, 1454, 1467, 1837, 1993, 2170
MboII	GAAGA	7 cut(s)	207, 284, 1052, 1693, 1769, 1798, 2018
MflI	RGATCY	2 cut(s)	1454, 1467
MhlI	GDGCHC	6 cut(s)	24, 137, 334, 572, 796, 1821
MluI	ACGCGT	1 cut(s)	561
MlyI	GAGTC	1 cut(s)	1368
MmeI	TCCRAC	3 cut(s)	217, 855, 2108
Mph1103I	ATGCAT	2 cut(s)	753, 1535
MroXI	GAANNNNTTC	1 cut(s)	579
MseI	TTAA	8 cut(s)	264, 438, 461, 1056, 1275, 1280, 2106, 2195
MslI	CAYNNNNRTG	6 cut(s)	130, 740, 756, 1044, 1528, 1644
MspI	CCGG	2 cut(s)	513, 2066
MspR9I	CCNGG	4 cut(s)	310, 1379, 1609, 2118
Mva1269I	GAATGC	1 cut(s)	357
MvaI	CCWGG	4 cut(s)	310, 1379, 1609, 2118
MvnI	CGCG	1 cut(s)	563
MwoI	GCNNNNNNNGC	8 cut(s)	452, 532, 701, 800, 1001, 1442, 1487, 1655
NcoI	CCATGG	2 cut(s)	426, 1314
NdeI	CATATG	1 cut(s)	2020
NdeII	GATC	6 cut(s)	628, 1454, 1467, 1837, 1993, 2170
NheI	GCTAGC	1 cut(s)	1861
NlaIV	GGNNCC	4 cut(s)	22, 23, 1010, 2115
NmeAIII	GCCGAG	1 cut(s)	647
NsiI	ATGCAT	2 cut(s)	753, 1535
NspI	RCATGY	5 cut(s)	1043, 1423, 1537, 1737, 1804
OliI	CACNNNNGTG	2 cut(s)	130, 740
PaeI	GCATGC	2 cut(s)	1423, 1737
PaqCI	CACCTGC	1 cut(s)	476
PcsI	WCGNNNNNNNCGW	1 cut(s)	321
PctI	GAATGC	1 cut(s)	357
PdmI	GAANNNNTTC	1 cut(s)	579
PfeI	GAWTC	6 cut(s)	364, 1086, 1382, 1559, 1591, 1663
PflFI	GACNNNGTC	1 cut(s)	671
PfoI	TCCNGGA	1 cut(s)	1377
PinAI	ACCGGT	1 cut(s)	512
PkrI	GCNGC	6 cut(s)	1447, 1450, 1966, 2011, 2014, 2053
Ple19I	CGATCG	1 cut(s)	2173
PleI	GAGTC	1 cut(s)	1368
PpsI	GAGTC	1 cut(s)	1368
PshBI	ATTAAT	1 cut(s)	2195
Psp6I	CCWGG	4 cut(s)	308, 1377, 1607, 2116
PspFI	CCCAGC	2 cut(s)	526, 1423
PspGI	CCWGG	4 cut(s)	308, 1377, 1607, 2116
PspN4I	GGNNCC	4 cut(s)	22, 23, 1010, 2115
PspOMI	GGGCCC	1 cut(s)	20
PspPI	GGNCC	4 cut(s)	20, 21, 667, 1611
PstI	CTGCAG	1 cut(s)	1450
PstNI	CAGNNNCTG	1 cut(s)	1871
PsuI	RGATCY	2 cut(s)	1454, 1467
PsyI	GACNNNGTC	1 cut(s)	671
PvuI	CGATCG	1 cut(s)	2173
RsaI	GTAC	4 cut(s)	377, 608, 1154, 2033
RsaNI	GTAC	4 cut(s)	376, 607, 1153, 2032
RseI	CAYNNNNRTG	6 cut(s)	130, 740, 756, 1044, 1528, 1644
SaqAI	TTAA	8 cut(s)	264, 438, 461, 1056, 1275, 1280, 2106, 2195
SatI	GCNGC	6 cut(s)	1446, 1449, 1965, 2010, 2013, 2052
Sau3AI	GATC	6 cut(s)	628, 1454, 1467, 1837, 1993, 2170
Sau96I	GGNCC	4 cut(s)	20, 21, 667, 1611
SchI	GAGTC	1 cut(s)	1368
ScrFI	CCNGG	4 cut(s)	310, 1379, 1609, 2118
SduI	GDGCHC	6 cut(s)	24, 137, 334, 572, 796, 1821
SexAI	ACCWGGT	1 cut(s)	2116
SfaNI	GCATC	6 cut(s)	760, 1062, 1259, 1858, 2024, 2038
SfcI	CTRYAG	2 cut(s)	1193, 1446
SinI	GGWCC	2 cut(s)	667, 1611
SmiMI	CAYNNNNRTG	6 cut(s)	130, 740, 756, 1044, 1528, 1644
SmlI	CTYRAG	4 cut(s)	797, 1148, 1173, 2004
SmoI	CTYRAG	4 cut(s)	797, 1148, 1173, 2004
SphI	GCATGC	2 cut(s)	1423, 1737
SsiI	CCGC	4 cut(s)	114, 361, 973, 1004
SspI	AATATT	1 cut(s)	954
SspMI	CTAG	8 cut(s)	636, 740, 1082, 1287, 1292, 1751, 1844, 1862
StyD4I	CCNGG	4 cut(s)	308, 1377, 1607, 2116
StyI	CCWWGG	6 cut(s)	426, 1286, 1314, 1471, 1717, 1843
TaaI	ACNGT	4 cut(s)	329, 1510, 1823, 1960
TaiI	ACGT	1 cut(s)	1975
TaqI	TCGA	5 cut(s)	165, 324, 345, 706, 2098
TaqII	GACCGA	1 cut(s)	2163
TatI	WGTACW	2 cut(s)	606, 2031
TfiI	GAWTC	6 cut(s)	364, 1086, 1382, 1559, 1591, 1663
Tru1I	TTAA	8 cut(s)	264, 438, 461, 1056, 1275, 1280, 2106, 2195
Tru9I	TTAA	8 cut(s)	264, 438, 461, 1056, 1275, 1280, 2106, 2195
TscAI	CASTG	7 cut(s)	137, 334, 761, 789, 1513, 1826, 1963
TseI	GCWGC	6 cut(s)	1445, 1448, 1964, 2009, 2012, 2051
TspGWI	ACGGA	1 cut(s)	1603
TspRI	CASTG	7 cut(s)	137, 334, 761, 789, 1513, 1826, 1963
Tth111I	GACNNNGTC	1 cut(s)	671
VneI	GTGCAC	1 cut(s)	330
VpaK11BI	GGWCC	2 cut(s)	667, 1611
VspI	ATTAAT	1 cut(s)	2195
XapI	RAATTY	9 cut(s)	320, 640, 682, 813, 959, 1205, 1403, 1502, 1519
XceI	RCATGY	5 cut(s)	1043, 1423, 1537, 1737, 1804
XmaJI	CCTAGG	2 cut(s)	1286, 1843
XmiI	GTMKAC	1 cut(s)	1179
XmnI	GAANNNNTTC	1 cut(s)	579
XspI	CTAG	8 cut(s)	636, 740, 1082, 1287, 1292, 1751, 1844, 1862
Zsp2I	ATGCAT	2 cut(s)	753, 1535

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.