Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr15

Orthogroup ID

OG0019600

Physical Location & Seq

Genomic Coordinates Forward (+)

36395753 .. 36396427

Gene Structure 675 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom15g36360.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 675 bp

ATGTATGTAAAGACTTGTGGCTTAGGTGAGGCGATACAAATATTCAAATTCATGCCTTACCGCAATGTTGTTTTGTATAATGCCATGATTGCAGGGTTCCTCCAAATAGAGACCTTTTCTTATGGACATGCAAACAAAGTGTTCAATCTTCTATCAGAGATGCAAAGGCCAGGAATCAATCCATCAACATTTACTTTCTCAATTATATTGAGAGCTTGTAAATTGGTTGAAGCTCTTGAGTACGGGAAACAAGTTCACTCTCAAGTCTACAAGTATGACCTACAGGGAGATGAATTCATTGGAAGTGGGCTTATTGATTTCTACTCTTCTTTGGGTTTATCTGATTATGCGTTGAGATGCTTTAACTTAACTCCTAGGCCTGATATTGTCTCGTGGACATCCATGGTTGCAGGTTATATCCAAAATGGGGAAATTGAAAGTGCATTTGATTTATTTTATAGACTCTTGGAATCTGGAATGAAGCCTAATGAATTCATAATATCAAGCATGCTGGGTGTGTGTGCTGATTTGGCTGAGCAAGATCTGGAGAGCAGATCCAAGGATATGCTGCAAAAGCTGGATTTGGGAAATTCACTGTTGTTCAAAATTCACAGATATGCATGTATGCAAAATCTGGAGATATTGATTCTGCTAATTTGGCCTTTACAGAGATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000959 GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0016070 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1900864 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DYW_deaminase PPR PPR_2

Protein Analysis

225

Amino Acids

25.57

Weight (kDa)

5.42

Isoelectric Point (pI)

45.72

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PPR_2	PF13041	21 - 73	3.1e-10	PPR repeat family
PPR_2	PF13041	127 - 175	3e-09	PPR repeat family
PPR	PF01535	130 - 159	1.1e-06	PPR repeat

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0019600)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G13880
malus_domestica	MD15G1395900.v1.1 MD15G1396200.v1.1 MD15G1407400.v1.1
prunus_persica	Prupe.1G554200_v2.0.a1
pyrus_communis	pycom15g35640 pycom15g36360

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	401
AccI	GTMKAC	1 cut(s)	267
AciI	CCGC	1 cut(s)	61
AclWI	GGATC	1 cut(s)	549
AcsI	RAATTY	5 cut(s)	47, 293, 491, 589, 606
AfaI	GTAC	1 cut(s)	242
AfiI	CCNNNNNNNGG	1 cut(s)	427
AgsI	TTSAA	5 cut(s)	46, 145, 230, 437, 604
AjnI	CCWGG	1 cut(s)	169
AluBI	AGCT	3 cut(s)	215, 233, 577
AluI	AGCT	3 cut(s)	215, 233, 577
Alw26I	GTCTC	2 cut(s)	104, 394
AlwI	GGATC	1 cut(s)	549
AoxI	GGCC	3 cut(s)	167, 377, 659
ApeKI	GCWGC	1 cut(s)	568
ApoI	RAATTY	5 cut(s)	47, 293, 491, 589, 606
AspA2I	CCTAGG	1 cut(s)	374
AsuHPI	GGTGA	1 cut(s)	38
AvrII	CCTAGG	1 cut(s)	374
BauI	CACGAG	1 cut(s)	391
BbvI	GCAGC	1 cut(s)	555
BccI	CCATC	1 cut(s)	190
BciT130I	CCWGG	1 cut(s)	171
BcoDI	GTCTC	2 cut(s)	104, 394
BfaI	CTAG	1 cut(s)	375
BfmI	CTRYAG	1 cut(s)	281
BfuAI	ACCTGC	1 cut(s)	401
BglII	AGATCT	1 cut(s)	541
BisI	GCNGC	1 cut(s)	569
BlnI	CCTAGG	1 cut(s)	374
BlpI	GCTNAGC	1 cut(s)	534
BlsI	GCNGC	1 cut(s)	570
Bme1390I	CCNGG	1 cut(s)	171
BmiI	GGNNCC	1 cut(s)	98
BmrFI	CCNGG	1 cut(s)	171
BmsI	GCATC	2 cut(s)	150, 347
BpmI	CTGGAG	2 cut(s)	566, 656
Bpu10I	CCTNAGC	1 cut(s)	22
Bpu1102I	GCTNAGC	1 cut(s)	534
BpuEI	CTTGAG	2 cut(s)	246, 257
BsaI	GGTCTC	1 cut(s)	104
BsaJI	CCNNGG	3 cut(s)	374, 402, 558
Bsc4I	CCNNNNNNNGG	1 cut(s)	427
Bse3DI	GCAATG	1 cut(s)	70
BseBI	CCWGG	1 cut(s)	171
BseDI	CCNNGG	3 cut(s)	374, 402, 558
BseGI	GGATG	1 cut(s)	398
BseLI	CCNNNNNNNGG	1 cut(s)	427
BseMI	GCAATG	1 cut(s)	70
BseMII	CTCAG	1 cut(s)	525
BseXI	GCAGC	1 cut(s)	555
BseYI	CCCAGC	1 cut(s)	511
BshFI	GGCC	3 cut(s)	169, 379, 661
BslI	CCNNNNNNNGG	1 cut(s)	427
BsmAI	GTCTC	2 cut(s)	104, 394
BsnI	GGCC	3 cut(s)	169, 379, 661
Bso31I	GGTCTC	1 cut(s)	104
Bsp143I	GATC	2 cut(s)	541, 554
Bsp1720I	GCTNAGC	1 cut(s)	534
Bsp19I	CCATGG	1 cut(s)	402
BspACI	CCGC	1 cut(s)	61
BspANI	GGCC	3 cut(s)	169, 379, 661
BspCNI	CTCAG	1 cut(s)	526
BspLI	GGNNCC	1 cut(s)	98
BspMI	ACCTGC	1 cut(s)	401
BspPI	GGATC	1 cut(s)	549
BspTNI	GGTCTC	1 cut(s)	104
BsrDI	GCAATG	1 cut(s)	70
BssECI	CCNNGG	3 cut(s)	374, 402, 558
BssMI	GATC	2 cut(s)	541, 554
BssSI	CACGAG	1 cut(s)	391
BssT1I	CCWWGG	3 cut(s)	374, 402, 558
Bst2BI	CACGAG	1 cut(s)	391
Bst2UI	CCWGG	1 cut(s)	171
Bst4CI	ACNGT	1 cut(s)	597
Bst6I	CTCTTC	1 cut(s)	331
BstC8I	GCNNGC	1 cut(s)	509
BstDEI	CTNAG	2 cut(s)	22, 534
BstDSI	CCRYGG	1 cut(s)	402
BstF5I	GGATG	1 cut(s)	398
BstKTI	GATC	2 cut(s)	544, 557
BstMAI	GTCTC	2 cut(s)	104, 394
BstMBI	GATC	2 cut(s)	541, 554
BstMWI	GCNNNNNNNGC	4 cut(s)	89, 530, 574, 658
BstNI	CCWGG	1 cut(s)	171
BstNSI	RCATGY	3 cut(s)	131, 511, 624
BstSCI	CCNGG	1 cut(s)	169
BstSFI	CTRYAG	1 cut(s)	281
BstV1I	GCAGC	1 cut(s)	555
BstX2I	RGATCY	2 cut(s)	541, 554
BstYI	RGATCY	2 cut(s)	541, 554
BsuRI	GGCC	3 cut(s)	169, 379, 661
BtgI	CCRYGG	1 cut(s)	402
BtsCI	GGATG	1 cut(s)	398
BtsIMutI	CAGTG	1 cut(s)	593
BveI	ACCTGC	1 cut(s)	401
Cac8I	GCNNGC	1 cut(s)	509
Csp6I	GTAC	1 cut(s)	241
CviAII	CATG	6 cut(s)	52, 85, 128, 403, 508, 621
CviQI	GTAC	1 cut(s)	241
DdeI	CTNAG	2 cut(s)	22, 534
DpnI	GATC	2 cut(s)	543, 556
DpnII	GATC	2 cut(s)	541, 554
Eam1104I	CTCTTC	1 cut(s)	331
EarI	CTCTTC	1 cut(s)	331
Eco130I	CCWWGG	3 cut(s)	374, 402, 558
Eco147I	AGGCCT	1 cut(s)	379
Eco31I	GGTCTC	1 cut(s)	104
EcoRI	GAATTC	2 cut(s)	293, 491
EcoRII	CCWGG	1 cut(s)	169
EcoT14I	CCWWGG	3 cut(s)	374, 402, 558
EcoT22I	ATGCAT	1 cut(s)	622
ErhI	CCWWGG	3 cut(s)	374, 402, 558
FaeI	CATG	6 cut(s)	55, 88, 131, 406, 511, 624
FatI	CATG	6 cut(s)	51, 84, 127, 402, 507, 620
FblI	GTMKAC	1 cut(s)	267
Fnu4HI	GCNGC	1 cut(s)	569
FokI	GGATG	1 cut(s)	385
Fsp4HI	GCNGC	1 cut(s)	569
FspBI	CTAG	1 cut(s)	375
GluI	GCNGC	1 cut(s)	569
GsaI	CCCAGC	1 cut(s)	515
GsuI	CTGGAG	2 cut(s)	566, 656
HaeIII	GGCC	3 cut(s)	169, 379, 661
Hin1II	CATG	6 cut(s)	55, 88, 131, 406, 511, 624
HinfI	GANTC	4 cut(s)	174, 462, 470, 646
HphI	GGTGA	1 cut(s)	38
Hpy166II	GTNNAC	3 cut(s)	256, 268, 396
Hpy188I	TCNGA	2 cut(s)	157, 343
Hpy188III	TCNNGA	4 cut(s)	236, 474, 545, 635
Hpy8I	GTNNAC	3 cut(s)	256, 268, 396
HpyCH4III	ACNGT	1 cut(s)	597
HpyCH4V	TGCA	8 cut(s)	92, 131, 163, 410, 443, 571, 620, 628
HpyF10VI	GCNNNNNNNGC	4 cut(s)	89, 530, 574, 658
HpyF3I	CTNAG	2 cut(s)	22, 534
Hsp92II	CATG	6 cut(s)	55, 88, 131, 406, 511, 624
Kzo9I	GATC	2 cut(s)	541, 554
Lsp1109I	GCAGC	1 cut(s)	555
LweI	GCATC	2 cut(s)	150, 347
MaeI	CTAG	1 cut(s)	375
MalI	GATC	2 cut(s)	543, 556
MboI	GATC	2 cut(s)	541, 554
MboII	GAAGA	2 cut(s)	140, 318
MflI	RGATCY	2 cut(s)	541, 554
MluCI	AATT	9 cut(s)	47, 201, 221, 293, 432, 491, 589, 606, 654
MlyI	GAGTC	1 cut(s)	456
MnlI	CCTC	2 cut(s)	22, 110
Mph1103I	ATGCAT	1 cut(s)	622
MseI	TTAA	2 cut(s)	363, 368
MslI	CAYNNNNRTG	1 cut(s)	615
MspR9I	CCNGG	1 cut(s)	171
MvaI	CCWGG	1 cut(s)	171
MwoI	GCNNNNNNNGC	4 cut(s)	89, 530, 574, 658
NcoI	CCATGG	1 cut(s)	402
NdeII	GATC	2 cut(s)	541, 554
NlaIII	CATG	6 cut(s)	55, 88, 131, 406, 511, 624
NlaIV	GGNNCC	1 cut(s)	98
NsiI	ATGCAT	1 cut(s)	622
NspI	RCATGY	3 cut(s)	131, 511, 624
PaeI	GCATGC	1 cut(s)	511
PceI	AGGCCT	1 cut(s)	379
PfeI	GAWTC	3 cut(s)	174, 470, 646
PkrI	GCNGC	1 cut(s)	570
PleI	GAGTC	1 cut(s)	456
PpsI	GAGTC	1 cut(s)	456
Psp6I	CCWGG	1 cut(s)	169
PspFI	CCCAGC	1 cut(s)	511
PspGI	CCWGG	1 cut(s)	169
PspN4I	GGNNCC	1 cut(s)	98
PsuI	RGATCY	2 cut(s)	541, 554
RsaI	GTAC	1 cut(s)	242
RsaNI	GTAC	1 cut(s)	241
RseI	CAYNNNNRTG	1 cut(s)	615
SaqAI	TTAA	2 cut(s)	363, 368
SatI	GCNGC	1 cut(s)	569
Sau3AI	GATC	2 cut(s)	541, 554
SchI	GAGTC	1 cut(s)	456
ScrFI	CCNGG	1 cut(s)	171
SetI	ASST	7 cut(s)	28, 116, 217, 235, 282, 415, 579
SfaNI	GCATC	2 cut(s)	150, 347
SfcI	CTRYAG	1 cut(s)	281
SmiMI	CAYNNNNRTG	1 cut(s)	615
SmlI	CTYRAG	2 cut(s)	236, 261
SmoI	CTYRAG	2 cut(s)	236, 261
SphI	GCATGC	1 cut(s)	511
Sse9I	AATT	9 cut(s)	47, 201, 221, 293, 432, 491, 589, 606, 654
SseBI	AGGCCT	1 cut(s)	379
SsiI	CCGC	1 cut(s)	61
SspI	AATATT	1 cut(s)	42
SspMI	CTAG	1 cut(s)	375
StuI	AGGCCT	1 cut(s)	379
StyD4I	CCNGG	1 cut(s)	169
StyI	CCWWGG	3 cut(s)	374, 402, 558
TaaI	ACNGT	1 cut(s)	597
TasI	AATT	9 cut(s)	47, 201, 221, 293, 432, 491, 589, 606, 654
TfiI	GAWTC	3 cut(s)	174, 470, 646
Tru1I	TTAA	2 cut(s)	363, 368
Tru9I	TTAA	2 cut(s)	363, 368
TscAI	CASTG	1 cut(s)	600
TseI	GCWGC	1 cut(s)	568
TspDTI	ATGAA	6 cut(s)	40, 286, 306, 484, 494, 504
TspRI	CASTG	1 cut(s)	600
XapI	RAATTY	5 cut(s)	47, 293, 491, 589, 606
XceI	RCATGY	3 cut(s)	131, 511, 624
XmaJI	CCTAGG	1 cut(s)	374
XmiI	GTMKAC	1 cut(s)	267
XspI	CTAG	1 cut(s)	375
Zsp2I	ATGCAT	1 cut(s)	622

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.