Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr16

Orthogroup ID

OG0018895

Physical Location & Seq

Genomic Coordinates Reverse (-)

15662455 .. 15663227

Gene Structure 773 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD16G1182800.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 699 bp

ATGCTCGTATCTCTGAGACCCAAATCATTCCCTGGACTTCCAGACCTTCGCATTTCAGGTCTCAAATGGCTCTCCACTGCCGCCGCCACCCAAAATCCAGAGGACAATCTCCGTTCCTTCTTCACCGGCAGAATGAACCCAACCCAAACCGACTACGAGCTCGCCTTGGTTTCGGCCTTAAAGTCTCGCTCTTCCCTCGCGGCCTCCTTCCAAGGCCAGCAAATCCACTCCCTTGTTCTCAAAGCCGGGCTCGACTCCAACAATTTCATCAGGAACAGCTTGATTAATACGCATGCCAAATGCGGCTTCATTGCCGATGCCGAGTTGCTGTTCGATTCTTGCTATAAGTGTTTGAGAAAATGCCGAAAAAAGGGTTGTGTCTCGTACACTACTATGATAATGGGTCTTGCCCAGGATGAGCGTTGGACCGAAGCCGTTGAGGTTTTCAGGGATATGAGGTCCGCGGGTGTGATCCCAAATGAGGTGACAGTGGCGACTGTTATCTCAACTTACTCACATTTGGGCGGTGTTTGGAATTGTCGAATGCTTCACGCTTTGGTGATTAAGTTGCAGCTTGAGGGGTTTGTTCTTGTCTCTACGAATTTGTTGCACATGTATTGGGGTTGTTCGAGTTTATGTGATGCGAGAAATTTGTTTAATGAGATGCCTGAAAAGAATATAGTTTCGTGGATTGTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000959 GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0016070 GO:0016071 GO:0016556 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0046483 GO:0071704 GO:0080156 GO:0090304 GO:0090305 GO:0097159 GO:1900864 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PPR PPR_2

Protein Analysis

233

Amino Acids

25.92

Weight (kDa)

8.8

Isoelectric Point (pI)

35.85

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PPR_2	PF13041	127 - 171	2e-10	PPR repeat family
PPR	PF01535	127 - 157	8.1e-08	PPR repeat

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0018895)

Species	Orthologous Gene IDs
malus_domestica	MD16G1182800.v1.1
rosa_chinensis	RchiOBHm_Chr4g0418811
rosa_multiflora	Rmu_sc0000935.1_g000025 Rmu_sc0000935.1_g000032 Rmu_sc0006705.1_g000001 Rmu_sc0020345.1_g000004
rosa_samantha	Rh4AG216500 Rh4CG228500
rosa_wichuraiana	Rw4G018470

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	2 cut(s)	200, 464
AciI	CCGC	7 cut(s)	81, 84, 200, 303, 462, 464, 525
AclWI	GGATC	1 cut(s)	466
AcsI	RAATTY	2 cut(s)	601, 649
AfaI	GTAC	1 cut(s)	386
AfiI	CCNNNNNNNGG	2 cut(s)	370, 481
AflIII	ACRYGT	1 cut(s)	612
AjnI	CCWGG	2 cut(s)	31, 411
AjuI	GAANNNNNNNTTGG	2 cut(s)	290, 322
AluBI	AGCT	3 cut(s)	160, 279, 574
AluI	AGCT	3 cut(s)	160, 279, 574
Alw21I	GWGCWC	1 cut(s)	162
Alw26I	GTCTC	5 cut(s)	10, 65, 189, 385, 598
AlwI	GGATC	1 cut(s)	466
AoxI	GGCC	3 cut(s)	174, 201, 214
ApeKI	GCWGC	1 cut(s)	571
ApoI	RAATTY	2 cut(s)	601, 649
AseI	ATTAAT	1 cut(s)	285
AspS9I	GGNCC	2 cut(s)	426, 459
AsuC2I	CCSGG	1 cut(s)	247
AsuHPI	GGTGA	3 cut(s)	115, 496, 571
AvaII	GGWCC	2 cut(s)	426, 459
BanII	GRGCYC	2 cut(s)	162, 252
Bbv12I	GWGCWC	1 cut(s)	162
BbvI	GCAGC	1 cut(s)	583
BceAI	ACGGC	1 cut(s)	419
BcgI	CGANNNNNNTGC	2 cut(s)	589, 623
BciT130I	CCWGG	2 cut(s)	33, 413
BcnI	CCSGG	1 cut(s)	247
BcoDI	GTCTC	5 cut(s)	10, 65, 189, 385, 598
BisI	GCNGC	5 cut(s)	81, 84, 201, 304, 572
BlsI	GCNGC	5 cut(s)	82, 85, 202, 305, 573
Bme1390I	CCNGG	3 cut(s)	33, 247, 413
Bme18I	GGWCC	2 cut(s)	426, 459
BmgT120I	GGNCC	2 cut(s)	426, 459
BmrFI	CCNGG	3 cut(s)	33, 247, 413
BmsI	GCATC	3 cut(s)	307, 631, 654
BpuEI	CTTGAG	1 cut(s)	596
BpuMI	CCSGG	1 cut(s)	247
BsaI	GGTCTC	2 cut(s)	10, 65
BsaJI	CCNNGG	5 cut(s)	31, 165, 211, 411, 462
Bsc4I	CCNNNNNNNGG	2 cut(s)	370, 481
Bse118I	RCCGGY	1 cut(s)	125
Bse3DI	GCAATG	1 cut(s)	309
BseBI	CCWGG	2 cut(s)	33, 413
BseDI	CCNNGG	5 cut(s)	31, 165, 211, 411, 462
BseGI	GGATG	1 cut(s)	421
BseLI	CCNNNNNNNGG	2 cut(s)	370, 481
BseMI	GCAATG	1 cut(s)	309
BseMII	CTCAG	1 cut(s)	5
BseXI	GCAGC	1 cut(s)	583
Bsh1236I	CGCG	2 cut(s)	200, 464
BshFI	GGCC	3 cut(s)	176, 203, 216
BsiHKAI	GWGCWC	1 cut(s)	162
BsiSI	CCGG	2 cut(s)	126, 246
BslI	CCNNNNNNNGG	2 cut(s)	370, 481
BsmAI	GTCTC	5 cut(s)	10, 65, 189, 385, 598
BsmI	GAATGC	1 cut(s)	549
BsnI	GGCC	3 cut(s)	176, 203, 216
Bso31I	GGTCTC	2 cut(s)	10, 65
Bsp1286I	GDGCHC	2 cut(s)	162, 252
Bsp143I	GATC	1 cut(s)	471
BspACI	CCGC	7 cut(s)	81, 84, 200, 303, 462, 464, 525
BspANI	GGCC	3 cut(s)	176, 203, 216
BspCNI	CTCAG	1 cut(s)	6
BspFNI	CGCG	2 cut(s)	200, 464
BspPI	GGATC	1 cut(s)	466
BspQI	GCTCTTC	1 cut(s)	196
BspTNI	GGTCTC	2 cut(s)	10, 65
BsrDI	GCAATG	1 cut(s)	309
BsrFI	RCCGGY	1 cut(s)	125
BssAI	RCCGGY	1 cut(s)	125
BssECI	CCNNGG	5 cut(s)	31, 165, 211, 411, 462
BssMI	GATC	1 cut(s)	471
BssT1I	CCWWGG	2 cut(s)	165, 211
Bst2UI	CCWGG	2 cut(s)	33, 413
Bst4CI	ACNGT	2 cut(s)	490, 499
Bst6I	CTCTTC	1 cut(s)	196
BstC8I	GCNNGC	3 cut(s)	162, 218, 294
BstDEI	CTNAG	1 cut(s)	14
BstDSI	CCRYGG	1 cut(s)	462
BstF5I	GGATG	1 cut(s)	421
BstFNI	CGCG	2 cut(s)	200, 464
BstKTI	GATC	1 cut(s)	474
BstMAI	GTCTC	5 cut(s)	10, 65, 189, 385, 598
BstMBI	GATC	1 cut(s)	471
BstNI	CCWGG	2 cut(s)	33, 413
BstNSI	RCATGY	2 cut(s)	296, 616
BstSCI	CCNGG	3 cut(s)	31, 245, 411
BstUI	CGCG	2 cut(s)	200, 464
BstV1I	GCAGC	1 cut(s)	583
BsuRI	GGCC	3 cut(s)	176, 203, 216
BtgI	CCRYGG	1 cut(s)	462
BtsCI	GGATG	1 cut(s)	421
BtsI	GCAGTG	1 cut(s)	75
BtsIMutI	CAGTG	2 cut(s)	75, 495
Cac8I	GCNNGC	3 cut(s)	162, 218, 294
Cfr10I	RCCGGY	1 cut(s)	125
Cfr13I	GGNCC	2 cut(s)	426, 459
Cfr42I	CCGCGG	1 cut(s)	465
Csp6I	GTAC	1 cut(s)	385
CviAII	CATG	2 cut(s)	293, 613
CviQI	GTAC	1 cut(s)	385
DdeI	CTNAG	1 cut(s)	14
DpnI	GATC	1 cut(s)	473
DpnII	GATC	1 cut(s)	471
Eam1104I	CTCTTC	1 cut(s)	196
EarI	CTCTTC	1 cut(s)	196
Ecl136II	GAGCTC	1 cut(s)	160
Eco130I	CCWWGG	2 cut(s)	165, 211
Eco24I	GRGCYC	2 cut(s)	162, 252
Eco31I	GGTCTC	2 cut(s)	10, 65
Eco47I	GGWCC	2 cut(s)	426, 459
Eco53kI	GAGCTC	1 cut(s)	160
EcoICRI	GAGCTC	1 cut(s)	160
EcoRII	CCWGG	2 cut(s)	31, 411
EcoT14I	CCWWGG	2 cut(s)	165, 211
EcoT38I	GRGCYC	2 cut(s)	162, 252
ErhI	CCWWGG	2 cut(s)	165, 211
FaeI	CATG	2 cut(s)	296, 616
FaiI	YATR	7 cut(s)	294, 345, 395, 455, 614, 637, 680
FatI	CATG	2 cut(s)	292, 612
FauI	CCCGC	1 cut(s)	457
Fnu4HI	GCNGC	5 cut(s)	81, 84, 201, 304, 572
FokI	GGATG	1 cut(s)	428
FriOI	GRGCYC	2 cut(s)	162, 252
Fsp4HI	GCNGC	5 cut(s)	81, 84, 201, 304, 572
GluI	GCNGC	5 cut(s)	81, 84, 201, 304, 572
HaeIII	GGCC	3 cut(s)	176, 203, 216
HapII	CCGG	2 cut(s)	126, 246
Hin1II	CATG	2 cut(s)	296, 616
HinfI	GANTC	2 cut(s)	254, 335
HpaII	CCGG	2 cut(s)	126, 246
HphI	GGTGA	3 cut(s)	115, 496, 571
Hpy166II	GTNNAC	1 cut(s)	387
Hpy188I	TCNGA	1 cut(s)	15
Hpy188III	TCNNGA	3 cut(s)	41, 98, 271
Hpy8I	GTNNAC	1 cut(s)	387
HpyAV	CCTTC	3 cut(s)	56, 127, 217
HpyCH4III	ACNGT	2 cut(s)	490, 499
HpyCH4V	TGCA	2 cut(s)	571, 610
HpyF3I	CTNAG	1 cut(s)	14
Hsp92II	CATG	2 cut(s)	296, 616
KspI	CCGCGG	1 cut(s)	465
Kzo9I	GATC	1 cut(s)	471
LguI	GCTCTTC	1 cut(s)	196
Lsp1109I	GCAGC	1 cut(s)	583
LweI	GCATC	3 cut(s)	307, 631, 654
MaeIII	GTNAC	1 cut(s)	484
MalI	GATC	1 cut(s)	473
MboI	GATC	1 cut(s)	471
MboII	GAAGA	2 cut(s)	112, 183
MhlI	GDGCHC	2 cut(s)	162, 252
MluCI	AATT	4 cut(s)	262, 535, 601, 649
MlyI	GAGTC	1 cut(s)	248
MmeI	TCCRAC	2 cut(s)	282, 404
MnlI	CCTC	7 cut(s)	94, 206, 214, 433, 450, 475, 571
MseI	TTAA	4 cut(s)	179, 285, 564, 657
MslI	CAYNNNNRTG	1 cut(s)	392
MspA1I	CMGCKG	1 cut(s)	464
MspI	CCGG	2 cut(s)	126, 246
MspR9I	CCNGG	3 cut(s)	33, 247, 413
Mva1269I	GAATGC	1 cut(s)	549
MvaI	CCWGG	2 cut(s)	33, 413
MvnI	CGCG	2 cut(s)	200, 464
NciI	CCSGG	1 cut(s)	247
NdeII	GATC	1 cut(s)	471
NlaIII	CATG	2 cut(s)	296, 616
NmeAIII	GCCGAG	1 cut(s)	346
NmuCI	GTSAC	1 cut(s)	484
NspI	RCATGY	2 cut(s)	296, 616
PaeI	GCATGC	1 cut(s)	296
PciI	ACATGT	1 cut(s)	612
PciSI	GCTCTTC	1 cut(s)	196
PctI	GAATGC	1 cut(s)	549
PfeI	GAWTC	1 cut(s)	335
PkrI	GCNGC	5 cut(s)	82, 85, 202, 305, 573
PleI	GAGTC	1 cut(s)	248
PpsI	GAGTC	1 cut(s)	248
PscI	ACATGT	1 cut(s)	612
PshBI	ATTAAT	1 cut(s)	285
Psp124BI	GAGCTC	1 cut(s)	162
Psp6I	CCWGG	2 cut(s)	31, 411
PspGI	CCWGG	2 cut(s)	31, 411
PspPI	GGNCC	2 cut(s)	426, 459
RsaI	GTAC	1 cut(s)	386
RsaNI	GTAC	1 cut(s)	385
RseI	CAYNNNNRTG	1 cut(s)	392
SacI	GAGCTC	1 cut(s)	162
SacII	CCGCGG	1 cut(s)	465
SapI	GCTCTTC	1 cut(s)	196
SaqAI	TTAA	4 cut(s)	179, 285, 564, 657
SatI	GCNGC	5 cut(s)	81, 84, 201, 304, 572
Sau3AI	GATC	1 cut(s)	471
Sau96I	GGNCC	2 cut(s)	426, 459
SchI	GAGTC	1 cut(s)	248
ScrFI	CCNGG	3 cut(s)	33, 247, 413
SduI	GDGCHC	2 cut(s)	162, 252
SetI	ASST	8 cut(s)	48, 61, 162, 281, 444, 461, 486, 576
SfaNI	GCATC	3 cut(s)	307, 631, 654
Sfr303I	CCGCGG	1 cut(s)	465
SgrBI	CCGCGG	1 cut(s)	465
SinI	GGWCC	2 cut(s)	426, 459
SmiMI	CAYNNNNRTG	1 cut(s)	392
SmlI	CTYRAG	1 cut(s)	575
SmoI	CTYRAG	1 cut(s)	575
SphI	GCATGC	1 cut(s)	296
Sse9I	AATT	4 cut(s)	262, 535, 601, 649
SsiI	CCGC	7 cut(s)	81, 84, 200, 303, 462, 464, 525
SstI	GAGCTC	1 cut(s)	162
StyD4I	CCNGG	3 cut(s)	31, 245, 411
StyI	CCWWGG	2 cut(s)	165, 211
TaaI	ACNGT	2 cut(s)	490, 499
TaqI	TCGA	4 cut(s)	252, 333, 541, 629
TaqII	GACCGA	1 cut(s)	443
TasI	AATT	4 cut(s)	262, 535, 601, 649
TauI	GCSGC	4 cut(s)	83, 86, 203, 306
TfiI	GAWTC	1 cut(s)	335
Tru1I	TTAA	4 cut(s)	179, 285, 564, 657
Tru9I	TTAA	4 cut(s)	179, 285, 564, 657
TscAI	CASTG	2 cut(s)	82, 495
TseFI	GTSAC	1 cut(s)	484
TseI	GCWGC	1 cut(s)	571
Tsp45I	GTSAC	1 cut(s)	484
TspDTI	ATGAA	3 cut(s)	149, 256, 298
TspGWI	ACGGA	1 cut(s)	101
TspRI	CASTG	2 cut(s)	82, 495
VpaK11BI	GGWCC	2 cut(s)	426, 459
VspI	ATTAAT	1 cut(s)	285
XapI	RAATTY	2 cut(s)	601, 649
XceI	RCATGY	2 cut(s)	296, 616

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.