Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0020345.1

Orthogroup ID

OG0018895

Physical Location & Seq

Genomic Coordinates Forward (+)

21839 .. 22210

Gene Structure 372 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0020345.1_g000004.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 372 bp

atgaacgtcgcgggaattttcaatcgtgacttccggtttcctctcatgcttatatctctgagacccaaatccctcaccggccttccacacctttctgctgcttcacctctcaaatgggtctccacagccaccacccaaaacccagacgaccatctgcgtctcctcttcaaatccagaacgaaccaaacccacatcgactacgagcgccaattggtctctgtcctaaaatcttgcactaccatttcggccatcttccaaggccagcaattccattcccttgttctcaagtctggtctcgactccaacactttcatcaacaacagtttgatcagcatgtatgccaaatccggctccatttccggcgccgaatag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000959 GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0016070 GO:0016071 GO:0016556 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0046483 GO:0071704 GO:0080156 GO:0090304 GO:0090305 GO:0097159 GO:1900864 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PPR PPR_2

Protein Analysis

123

Amino Acids

13.64

Weight (kDa)

9.8

Isoelectric Point (pI)

29.43

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0018895)

Species	Orthologous Gene IDs
malus_domestica	MD16G1182800.v1.1
rosa_chinensis	RchiOBHm_Chr4g0418811
rosa_multiflora	Rmu_sc0000935.1_g000025 Rmu_sc0000935.1_g000032 Rmu_sc0006705.1_g000001 Rmu_sc0020345.1_g000004
rosa_samantha	Rh4AG216500 Rh4CG228500
rosa_wichuraiana	Rw4G018470

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	362
AccII	CGCG	1 cut(s)	11
AciI	CCGC	1 cut(s)	11
AcoI	YGGCCR	1 cut(s)	246
AcsI	RAATTY	1 cut(s)	15
AcyI	GRCGYC	1 cut(s)	363
AgsI	TTSAA	2 cut(s)	22, 169
Alw26I	GTCTC	5 cut(s)	55, 124, 164, 220, 299
AoxI	GGCC	3 cut(s)	79, 246, 259
ApeKI	GCWGC	1 cut(s)	98
ApoI	RAATTY	1 cut(s)	15
AspLEI	GCGC	2 cut(s)	207, 365
AsuHPI	GGTGA	2 cut(s)	67, 96
BanI	GGYRCC	1 cut(s)	362
BbvI	GCAGC	1 cut(s)	85
BccI	CCATC	2 cut(s)	159, 257
BclI	TGATCA	1 cut(s)	327
BcoDI	GTCTC	5 cut(s)	55, 124, 164, 220, 299
BfoI	RGCGCY	2 cut(s)	208, 366
BisI	GCNGC	1 cut(s)	99
BlsI	GCNGC	1 cut(s)	100
BmiI	GGNNCC	2 cut(s)	352, 364
BpuEI	CTTGAG	1 cut(s)	269
BsaHI	GRCGYC	1 cut(s)	363
BsaI	GGTCTC	4 cut(s)	55, 124, 220, 299
BsaJI	CCNNGG	1 cut(s)	256
BsaWI	WCCGGW	1 cut(s)	33
Bse118I	RCCGGY	1 cut(s)	77
BseDI	CCNNGG	1 cut(s)	256
BseMII	CTCAG	1 cut(s)	50
BseRI	GAGGAG	1 cut(s)	152
BseXI	GCAGC	1 cut(s)	85
Bsh1236I	CGCG	1 cut(s)	11
BshFI	GGCC	3 cut(s)	81, 248, 261
BshNI	GGYRCC	1 cut(s)	362
BsiSI	CCGG	4 cut(s)	34, 78, 348, 360
BsmAI	GTCTC	5 cut(s)	55, 124, 164, 220, 299
BsmBI	CGTCTC	1 cut(s)	164
BsnI	GGCC	3 cut(s)	81, 248, 261
Bso31I	GGTCTC	4 cut(s)	55, 124, 220, 299
Bsp143I	GATC	1 cut(s)	327
BspACI	CCGC	1 cut(s)	11
BspANI	GGCC	3 cut(s)	81, 248, 261
BspCNI	CTCAG	1 cut(s)	51
BspFNI	CGCG	1 cut(s)	11
BspLI	GGNNCC	2 cut(s)	352, 364
BspT107I	GGYRCC	1 cut(s)	362
BspTNI	GGTCTC	4 cut(s)	55, 124, 220, 299
BsrFI	RCCGGY	1 cut(s)	77
BssAI	RCCGGY	1 cut(s)	77
BssECI	CCNNGG	1 cut(s)	256
BssMI	GATC	1 cut(s)	327
BssNI	GRCGYC	1 cut(s)	363
BssT1I	CCWWGG	1 cut(s)	256
Bst4CI	ACNGT	1 cut(s)	323
Bst6I	CTCTTC	1 cut(s)	170
BstACI	GRCGYC	1 cut(s)	363
BstC8I	GCNNGC	1 cut(s)	263
BstDEI	CTNAG	1 cut(s)	59
BstFNI	CGCG	1 cut(s)	11
BstH2I	RGCGCY	2 cut(s)	208, 366
BstHHI	GCGC	2 cut(s)	207, 365
BstKTI	GATC	1 cut(s)	330
BstMAI	GTCTC	5 cut(s)	55, 124, 164, 220, 299
BstMBI	GATC	1 cut(s)	327
BstNSI	RCATGY	1 cut(s)	337
BstUI	CGCG	1 cut(s)	11
BstV1I	GCAGC	1 cut(s)	85
BsuRI	GGCC	3 cut(s)	81, 248, 261
Cac8I	GCNNGC	1 cut(s)	263
CfoI	GCGC	2 cut(s)	207, 365
Cfr10I	RCCGGY	1 cut(s)	77
CseI	GACGC	1 cut(s)	146
CviAII	CATG	2 cut(s)	46, 334
CviJI	RGCY	5 cut(s)	81, 128, 248, 261, 351
CviKI_1	RGCY	5 cut(s)	81, 128, 248, 261, 351
DdeI	CTNAG	1 cut(s)	59
DinI	GGCGCC	1 cut(s)	364
DpnI	GATC	1 cut(s)	329
DpnII	GATC	1 cut(s)	327
EaeI	YGGCCR	1 cut(s)	246
Eam1104I	CTCTTC	1 cut(s)	170
EarI	CTCTTC	1 cut(s)	170
Eco130I	CCWWGG	1 cut(s)	256
Eco31I	GGTCTC	4 cut(s)	55, 124, 220, 299
EcoT14I	CCWWGG	1 cut(s)	256
EgeI	GGCGCC	1 cut(s)	364
EheI	GGCGCC	1 cut(s)	364
ErhI	CCWWGG	1 cut(s)	256
Esp3I	CGTCTC	1 cut(s)	164
FaeI	CATG	2 cut(s)	49, 337
FaiI	YATR	4 cut(s)	47, 53, 335, 339
FatI	CATG	2 cut(s)	45, 333
FauI	CCCGC	1 cut(s)	4
FbaI	TGATCA	1 cut(s)	327
Fnu4HI	GCNGC	1 cut(s)	99
Fsp4HI	GCNGC	1 cut(s)	99
GlaI	GCGC	2 cut(s)	206, 364
GluI	GCNGC	1 cut(s)	99
HaeII	RGCGCY	2 cut(s)	208, 366
HaeIII	GGCC	3 cut(s)	81, 248, 261
HapII	CCGG	4 cut(s)	34, 78, 348, 360
HgaI	GACGC	1 cut(s)	146
HhaI	GCGC	2 cut(s)	207, 365
Hin1I	GRCGYC	1 cut(s)	363
Hin1II	CATG	2 cut(s)	49, 337
Hin6I	GCGC	2 cut(s)	205, 363
HinP1I	GCGC	2 cut(s)	205, 363
HinfI	GANTC	1 cut(s)	299
HpaII	CCGG	4 cut(s)	34, 78, 348, 360
HphI	GGTGA	2 cut(s)	67, 96
Hpy188I	TCNGA	1 cut(s)	60
Hpy188III	TCNNGA	3 cut(s)	26, 174, 296
Hpy99I	CGWCG	1 cut(s)	11
HpyAV	CCTTC	1 cut(s)	92
HpyCH4III	ACNGT	1 cut(s)	323
HpyCH4IV	ACGT	1 cut(s)	6
HpyCH4V	TGCA	1 cut(s)	234
HpyF3I	CTNAG	1 cut(s)	59
HpySE526I	ACGT	1 cut(s)	6
Hsp92I	GRCGYC	1 cut(s)	363
Hsp92II	CATG	2 cut(s)	49, 337
HspAI	GCGC	2 cut(s)	205, 363
KasI	GGCGCC	1 cut(s)	362
Ksp22I	TGATCA	1 cut(s)	327
Kzo9I	GATC	1 cut(s)	327
LmnI	GCTCC	1 cut(s)	356
LpnPI	CCDG	7 cut(s)	47, 91, 156, 187, 275, 276, 361
Lsp1109I	GCAGC	1 cut(s)	85
MaeII	ACGT	1 cut(s)	6
MaeIII	GTNAC	1 cut(s)	26
MalI	GATC	1 cut(s)	329
MboI	GATC	1 cut(s)	327
MboII	GAAGA	2 cut(s)	157, 244
MfeI	CAATTG	1 cut(s)	209
MluCI	AATT	3 cut(s)	15, 209, 266
Mly113I	GGCGCC	1 cut(s)	363
MlyI	GAGTC	1 cut(s)	293
MmeI	TCCRAC	1 cut(s)	327
MnlI	CCTC	4 cut(s)	51, 83, 117, 173
MspI	CCGG	4 cut(s)	34, 78, 348, 360
MunI	CAATTG	1 cut(s)	209
MvnI	CGCG	1 cut(s)	11
NarI	GGCGCC	1 cut(s)	363
NdeII	GATC	1 cut(s)	327
NlaIII	CATG	2 cut(s)	49, 337
NlaIV	GGNNCC	2 cut(s)	352, 364
NmuCI	GTSAC	1 cut(s)	26
NspI	RCATGY	1 cut(s)	337
PkrI	GCNGC	1 cut(s)	100
PleI	GAGTC	1 cut(s)	293
PluTI	GGCGCC	1 cut(s)	366
PpsI	GAGTC	1 cut(s)	293
PspN4I	GGNNCC	2 cut(s)	352, 364
SatI	GCNGC	1 cut(s)	99
Sau3AI	GATC	1 cut(s)	327
SchI	GAGTC	1 cut(s)	293
SetI	ASST	3 cut(s)	9, 93, 109
SfoI	GGCGCC	1 cut(s)	364
SmlI	CTYRAG	1 cut(s)	284
SmoI	CTYRAG	1 cut(s)	284
Sse9I	AATT	3 cut(s)	15, 209, 266
SsiI	CCGC	1 cut(s)	11
SspDI	GGCGCC	1 cut(s)	362
StyI	CCWWGG	1 cut(s)	256
TaaI	ACNGT	1 cut(s)	323
TaiI	ACGT	1 cut(s)	9
TaqI	TCGA	2 cut(s)	195, 297
TasI	AATT	3 cut(s)	15, 209, 266
TseFI	GTSAC	1 cut(s)	26
TseI	GCWGC	1 cut(s)	98
Tsp45I	GTSAC	1 cut(s)	26
TspDTI	ATGAA	2 cut(s)	17, 301
XapI	RAATTY	1 cut(s)	15
XceI	RCATGY	1 cut(s)	337

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.