Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4C

Orthogroup ID

OG0018895

Physical Location & Seq

Genomic Coordinates Forward (+)

46644974 .. 46645255

Gene Structure 282 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4CG228500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 282 bp

ATGAACCATTTCAATCGTGACCTCTGGTTTCCTCTCATGCTTATATCTCTGAGACCCAAATCCCTCACCGGCCTTCCACACCTTTCTGCTGCTTCACCTCTCAAATGGGTCTCCACAGCCACCACCCAAAACCCAGACGACCATCTGCGTCTCTTCTTCAAATCGAGAACGAACCAAACCCACATCGACTACGAGCGCCAATTGGTCTCTGTTCTAAAATCTTGCGCCAACAGTTTGATTAGCATGTATGCCAAATGCGGCTCCATTTCCGGCGCCGAATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000959 GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0016070 GO:0016071 GO:0016556 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0046483 GO:0071704 GO:0080156 GO:0090304 GO:0090305 GO:0097159 GO:1900864 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PPR PPR_2

Protein Analysis

93

Amino Acids

10.5

Weight (kDa)

9.44

Isoelectric Point (pI)

32.52

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0018895)

Species	Orthologous Gene IDs
malus_domestica	MD16G1182800.v1.1
rosa_chinensis	RchiOBHm_Chr4g0418811
rosa_multiflora	Rmu_sc0000935.1_g000025 Rmu_sc0000935.1_g000032 Rmu_sc0006705.1_g000001 Rmu_sc0020345.1_g000004
rosa_samantha	Rh4AG216500 Rh4CG228500
rosa_wichuraiana	Rw4G018470

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	272
AciI	CCGC	1 cut(s)	258
AcyI	GRCGYC	1 cut(s)	273
AgsI	TTSAA	2 cut(s)	13, 160
Alw26I	GTCTC	4 cut(s)	46, 115, 155, 211
AoxI	GGCC	1 cut(s)	70
ApeKI	GCWGC	1 cut(s)	89
Asp700I	GAANNNNTTC	1 cut(s)	8
AspLEI	GCGC	3 cut(s)	198, 227, 275
AsuHPI	GGTGA	2 cut(s)	58, 87
BanI	GGYRCC	1 cut(s)	272
BbvI	GCAGC	1 cut(s)	76
BccI	CCATC	1 cut(s)	150
BcoDI	GTCTC	4 cut(s)	46, 115, 155, 211
BfoI	RGCGCY	2 cut(s)	199, 276
BisI	GCNGC	2 cut(s)	90, 259
BlsI	GCNGC	2 cut(s)	91, 260
BmiI	GGNNCC	2 cut(s)	262, 274
BsaHI	GRCGYC	1 cut(s)	273
BsaI	GGTCTC	3 cut(s)	46, 115, 211
Bse118I	RCCGGY	1 cut(s)	68
BseMII	CTCAG	1 cut(s)	41
BseXI	GCAGC	1 cut(s)	76
BshFI	GGCC	1 cut(s)	72
BshNI	GGYRCC	1 cut(s)	272
BsiSI	CCGG	2 cut(s)	69, 270
BsmAI	GTCTC	4 cut(s)	46, 115, 155, 211
BsmBI	CGTCTC	1 cut(s)	155
BsnI	GGCC	1 cut(s)	72
Bso31I	GGTCTC	3 cut(s)	46, 115, 211
BspACI	CCGC	1 cut(s)	258
BspANI	GGCC	1 cut(s)	72
BspCNI	CTCAG	1 cut(s)	42
BspLI	GGNNCC	2 cut(s)	262, 274
BspT107I	GGYRCC	1 cut(s)	272
BspTNI	GGTCTC	3 cut(s)	46, 115, 211
BsrFI	RCCGGY	1 cut(s)	68
BssAI	RCCGGY	1 cut(s)	68
BssNI	GRCGYC	1 cut(s)	273
Bst4CI	ACNGT	1 cut(s)	233
Bst6I	CTCTTC	1 cut(s)	158
BstACI	GRCGYC	1 cut(s)	273
BstDEI	CTNAG	1 cut(s)	50
BstH2I	RGCGCY	2 cut(s)	199, 276
BstHHI	GCGC	3 cut(s)	198, 227, 275
BstMAI	GTCTC	4 cut(s)	46, 115, 155, 211
BstNSI	RCATGY	1 cut(s)	247
BstV1I	GCAGC	1 cut(s)	76
BsuRI	GGCC	1 cut(s)	72
CfoI	GCGC	3 cut(s)	198, 227, 275
Cfr10I	RCCGGY	1 cut(s)	68
CseI	GACGC	1 cut(s)	137
CviAII	CATG	2 cut(s)	37, 244
CviJI	RGCY	3 cut(s)	72, 119, 261
CviKI_1	RGCY	3 cut(s)	72, 119, 261
DdeI	CTNAG	1 cut(s)	50
DinI	GGCGCC	1 cut(s)	274
Eam1104I	CTCTTC	1 cut(s)	158
EarI	CTCTTC	1 cut(s)	158
Eco31I	GGTCTC	3 cut(s)	46, 115, 211
EgeI	GGCGCC	1 cut(s)	274
EheI	GGCGCC	1 cut(s)	274
Esp3I	CGTCTC	1 cut(s)	155
FaeI	CATG	2 cut(s)	40, 247
FaiI	YATR	4 cut(s)	38, 44, 245, 249
FatI	CATG	2 cut(s)	36, 243
Fnu4HI	GCNGC	2 cut(s)	90, 259
Fsp4HI	GCNGC	2 cut(s)	90, 259
GlaI	GCGC	3 cut(s)	197, 226, 274
GluI	GCNGC	2 cut(s)	90, 259
HaeII	RGCGCY	2 cut(s)	199, 276
HaeIII	GGCC	1 cut(s)	72
HapII	CCGG	2 cut(s)	69, 270
HgaI	GACGC	1 cut(s)	137
HhaI	GCGC	3 cut(s)	198, 227, 275
Hin1I	GRCGYC	1 cut(s)	273
Hin1II	CATG	2 cut(s)	40, 247
Hin6I	GCGC	3 cut(s)	196, 225, 273
HinP1I	GCGC	3 cut(s)	196, 225, 273
HpaII	CCGG	2 cut(s)	69, 270
HphI	GGTGA	2 cut(s)	58, 87
Hpy188I	TCNGA	1 cut(s)	51
Hpy188III	TCNNGA	2 cut(s)	17, 165
HpyAV	CCTTC	1 cut(s)	83
HpyCH4III	ACNGT	1 cut(s)	233
HpyF3I	CTNAG	1 cut(s)	50
Hsp92I	GRCGYC	1 cut(s)	273
Hsp92II	CATG	2 cut(s)	40, 247
HspAI	GCGC	3 cut(s)	196, 225, 273
KasI	GGCGCC	1 cut(s)	272
LmnI	GCTCC	1 cut(s)	266
LpnPI	CCDG	3 cut(s)	10, 82, 147
Lsp1109I	GCAGC	1 cut(s)	76
MaeIII	GTNAC	1 cut(s)	17
MboII	GAAGA	2 cut(s)	145, 148
MfeI	CAATTG	1 cut(s)	200
MluCI	AATT	1 cut(s)	200
Mly113I	GGCGCC	1 cut(s)	273
MnlI	CCTC	4 cut(s)	32, 42, 74, 108
MroXI	GAANNNNTTC	1 cut(s)	8
MspI	CCGG	2 cut(s)	69, 270
MunI	CAATTG	1 cut(s)	200
NarI	GGCGCC	1 cut(s)	273
NlaIII	CATG	2 cut(s)	40, 247
NlaIV	GGNNCC	2 cut(s)	262, 274
NmuCI	GTSAC	1 cut(s)	17
NspI	RCATGY	1 cut(s)	247
PdmI	GAANNNNTTC	1 cut(s)	8
PkrI	GCNGC	2 cut(s)	91, 260
PluTI	GGCGCC	1 cut(s)	276
PspN4I	GGNNCC	2 cut(s)	262, 274
SatI	GCNGC	2 cut(s)	90, 259
SetI	ASST	3 cut(s)	24, 84, 100
SfoI	GGCGCC	1 cut(s)	274
SgeI	CNNG	9 cut(s)	29, 37, 49, 81, 146, 177, 205, 234, 256
Sse9I	AATT	1 cut(s)	200
SsiI	CCGC	1 cut(s)	258
SspDI	GGCGCC	1 cut(s)	272
TaaI	ACNGT	1 cut(s)	233
TaqI	TCGA	2 cut(s)	164, 186
TasI	AATT	1 cut(s)	200
TauI	GCSGC	1 cut(s)	261
TseFI	GTSAC	1 cut(s)	17
TseI	GCWGC	1 cut(s)	89
Tsp45I	GTSAC	1 cut(s)	17
TspDTI	ATGAA	1 cut(s)	17
XceI	RCATGY	1 cut(s)	247
XmnI	GAANNNNTTC	1 cut(s)	8

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.