Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr4

Orthogroup ID

OG0018895

Physical Location & Seq

Genomic Coordinates Forward (+)

41020750 .. 41021265

Gene Structure 516 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw4G018470.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 516 bp

ATGATAATGGGTCTTTCTAGAAATGGGTTTTGGAGGGAAGCTGTTGAGGTTTTTAGGGATATGAGGAATGCCGGTGTGATGCCGAATCAGCTGACAATGGGTACTGTGATCTCGACGTTTTCACATTTGGGTGGGATTTGGAATTGTAGAAAGCTTTATGGTTTGGTGGTTAAGTTGCAGCTTGATGGAATGGTGCTTGTTTCGACGAATTTGGTGAAGGTGTATTGTGCTTGTAAGAGCGTGTGGGAAGCGAGAATTTTGTTTGATGAGATGCCCGAAAGGAATATAGTTTCGTGGACTGTCATGTTGAATGGGTACTCTAAGGCTGGACTTGTGCATTTGGCAAGAGAGTTGTTTGAGAGGATTGATATGAAAGATGTGGTTTCGTGGGGTACAATGATTGATGGGTATGTGCAAGTGGAGTGCTCGAGTGAAGCTTTGATGATGTATCGTGAAATGCTGTGTGCCAGGTTGGGACCGAATGATGTTATGAAAAGCTTTGATGATGTATTATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000959 GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0016070 GO:0016071 GO:0016556 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0046483 GO:0071704 GO:0080156 GO:0090304 GO:0090305 GO:0097159 GO:1900864 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PPR PPR_2

Protein Analysis

171

Amino Acids

19.49

Weight (kDa)

6.12

Isoelectric Point (pI)

24.86

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PPR	PF01535	1 - 26	5.4e-06	PPR repeat
PPR_2	PF13041	1 - 41	3.4e-07	PPR repeat family
PPR	PF01535	97 - 124	2.5e-06	PPR repeat
PPR_2	PF13041	125 - 162	7.9e-06	PPR repeat family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0018895)

Species	Orthologous Gene IDs
malus_domestica	MD16G1182800.v1.1
rosa_chinensis	RchiOBHm_Chr4g0418811
rosa_multiflora	Rmu_sc0000935.1_g000025 Rmu_sc0000935.1_g000032 Rmu_sc0006705.1_g000001 Rmu_sc0020345.1_g000004
rosa_samantha	Rh4AG216500 Rh4CG228500
rosa_wichuraiana	Rw4G018470

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AcsI	RAATTY	2 cut(s)	208, 255
AfaI	GTAC	3 cut(s)	103, 317, 394
AgsI	TTSAA	1 cut(s)	310
AjnI	CCWGG	1 cut(s)	467
AjuI	GAANNNNNNNTTGG	2 cut(s)	13, 45
AluBI	AGCT	6 cut(s)	41, 91, 154, 181, 437, 498
AluI	AGCT	6 cut(s)	41, 91, 154, 181, 437, 498
Alw21I	GWGCWC	1 cut(s)	428
Ama87I	CYCGRG	1 cut(s)	427
ApeKI	GCWGC	1 cut(s)	178
ApoI	RAATTY	2 cut(s)	208, 255
AspS9I	GGNCC	1 cut(s)	476
AsuHPI	GGTGA	1 cut(s)	226
AvaI	CYCGRG	1 cut(s)	427
AvaII	GGWCC	1 cut(s)	476
Bbv12I	GWGCWC	1 cut(s)	428
BbvI	GCAGC	1 cut(s)	190
BccI	CCATC	2 cut(s)	179, 398
BciT130I	CCWGG	1 cut(s)	469
BfaI	CTAG	1 cut(s)	18
BisI	GCNGC	1 cut(s)	179
BlsI	GCNGC	1 cut(s)	180
Bme1390I	CCNGG	1 cut(s)	469
Bme18I	GGWCC	1 cut(s)	476
BmeT110I	CYCGRG	1 cut(s)	427
BmgT120I	GGNCC	1 cut(s)	476
BmiI	GGNNCC	1 cut(s)	477
BmrFI	CCNGG	1 cut(s)	469
BmsI	GCATC	2 cut(s)	69, 261
Bse118I	RCCGGY	1 cut(s)	71
BseBI	CCWGG	1 cut(s)	469
BseXI	GCAGC	1 cut(s)	190
BsiHKAI	GWGCWC	1 cut(s)	428
BsiHKCI	CYCGRG	1 cut(s)	427
BsiSI	CCGG	1 cut(s)	72
BslFI	GGGAC	1 cut(s)	489
BsmFI	GGGAC	1 cut(s)	489
BsmI	GAATGC	1 cut(s)	73
BsoBI	CYCGRG	1 cut(s)	427
Bsp1286I	GDGCHC	1 cut(s)	428
Bsp143I	GATC	1 cut(s)	108
BspLI	GGNNCC	1 cut(s)	477
BsrFI	RCCGGY	1 cut(s)	71
BssAI	RCCGGY	1 cut(s)	71
BssMI	GATC	1 cut(s)	108
Bst2UI	CCWGG	1 cut(s)	469
Bst4CI	ACNGT	2 cut(s)	106, 301
BstDEI	CTNAG	1 cut(s)	321
BstKTI	GATC	1 cut(s)	111
BstMBI	GATC	1 cut(s)	108
BstMWI	GCNNNNNNNGC	1 cut(s)	88
BstNI	CCWGG	1 cut(s)	469
BstSCI	CCNGG	1 cut(s)	467
BstV1I	GCAGC	1 cut(s)	190
Cfr10I	RCCGGY	1 cut(s)	71
Cfr13I	GGNCC	1 cut(s)	476
Csp6I	GTAC	3 cut(s)	102, 316, 393
CviAII	CATG	1 cut(s)	304
CviJI	RGCY	7 cut(s)	41, 91, 154, 181, 326, 437, 498
CviKI_1	RGCY	7 cut(s)	41, 91, 154, 181, 326, 437, 498
CviQI	GTAC	3 cut(s)	102, 316, 393
DdeI	CTNAG	1 cut(s)	321
DpnI	GATC	1 cut(s)	110
DpnII	GATC	1 cut(s)	108
Eco47I	GGWCC	1 cut(s)	476
Eco88I	CYCGRG	1 cut(s)	427
EcoRII	CCWGG	1 cut(s)	467
FaeI	CATG	1 cut(s)	307
FaiI	YATR	8 cut(s)	62, 159, 287, 305, 371, 411, 491, 514
FaqI	GGGAC	1 cut(s)	489
FatI	CATG	1 cut(s)	303
Fnu4HI	GCNGC	1 cut(s)	179
Fsp4HI	GCNGC	1 cut(s)	179
FspBI	CTAG	1 cut(s)	18
GluI	GCNGC	1 cut(s)	179
HapII	CCGG	1 cut(s)	72
Hin1II	CATG	1 cut(s)	307
HindIII	AAGCTT	3 cut(s)	152, 435, 496
HinfI	GANTC	1 cut(s)	85
HpaII	CCGG	1 cut(s)	72
HphI	GGTGA	1 cut(s)	226
Hpy166II	GTNNAC	1 cut(s)	297
Hpy188III	TCNNGA	3 cut(s)	18, 112, 452
Hpy8I	GTNNAC	1 cut(s)	297
Hpy99I	CGWCG	2 cut(s)	118, 208
HpyAV	CCTTC	1 cut(s)	211
HpyCH4III	ACNGT	2 cut(s)	106, 301
HpyCH4IV	ACGT	1 cut(s)	116
HpyCH4V	TGCA	3 cut(s)	178, 337, 415
HpyF10VI	GCNNNNNNNGC	1 cut(s)	88
HpyF3I	CTNAG	1 cut(s)	321
HpySE526I	ACGT	1 cut(s)	116
Hsp92II	CATG	1 cut(s)	307
Kzo9I	GATC	1 cut(s)	108
LpnPI	CCDG	4 cut(s)	85, 312, 454, 481
Lsp1109I	GCAGC	1 cut(s)	190
LweI	GCATC	2 cut(s)	69, 261
MaeI	CTAG	1 cut(s)	18
MaeII	ACGT	1 cut(s)	116
MalI	GATC	1 cut(s)	110
MboI	GATC	1 cut(s)	108
MhlI	GDGCHC	1 cut(s)	428
MluCI	AATT	3 cut(s)	142, 208, 255
MnlI	CCTC	4 cut(s)	27, 40, 57, 354
MseI	TTAA	1 cut(s)	171
MslI	CAYNNNNRTG	1 cut(s)	129
MspA1I	CMGCKG	1 cut(s)	91
MspI	CCGG	1 cut(s)	72
MspR9I	CCNGG	1 cut(s)	469
Mva1269I	GAATGC	1 cut(s)	73
MvaI	CCWGG	1 cut(s)	469
MwoI	GCNNNNNNNGC	1 cut(s)	88
NdeII	GATC	1 cut(s)	108
NlaIII	CATG	1 cut(s)	307
NlaIV	GGNNCC	1 cut(s)	477
PaeR7I	CTCGAG	1 cut(s)	427
PctI	GAATGC	1 cut(s)	73
PfeI	GAWTC	1 cut(s)	85
PkrI	GCNGC	1 cut(s)	180
Psp6I	CCWGG	1 cut(s)	467
PspGI	CCWGG	1 cut(s)	467
PspN4I	GGNNCC	1 cut(s)	477
PspPI	GGNCC	1 cut(s)	476
PspXI	VCTCGAGB	1 cut(s)	427
PvuII	CAGCTG	1 cut(s)	91
RsaI	GTAC	3 cut(s)	103, 317, 394
RsaNI	GTAC	3 cut(s)	102, 316, 393
RseI	CAYNNNNRTG	1 cut(s)	129
SaqAI	TTAA	1 cut(s)	171
SatI	GCNGC	1 cut(s)	179
Sau3AI	GATC	1 cut(s)	108
Sau96I	GGNCC	1 cut(s)	476
ScrFI	CCNGG	1 cut(s)	469
SduI	GDGCHC	1 cut(s)	428
SfaNI	GCATC	2 cut(s)	69, 261
Sfr274I	CTCGAG	1 cut(s)	427
SinI	GGWCC	1 cut(s)	476
SlaI	CTCGAG	1 cut(s)	427
SmiMI	CAYNNNNRTG	1 cut(s)	129
SmlI	CTYRAG	1 cut(s)	427
SmoI	CTYRAG	1 cut(s)	427
Sse9I	AATT	3 cut(s)	142, 208, 255
SspMI	CTAG	1 cut(s)	18
StyD4I	CCNGG	1 cut(s)	467
TaaI	ACNGT	2 cut(s)	106, 301
TaiI	ACGT	1 cut(s)	119
TaqI	TCGA	3 cut(s)	113, 203, 428
TaqII	GACCGA	1 cut(s)	493
TasI	AATT	3 cut(s)	142, 208, 255
TfiI	GAWTC	1 cut(s)	85
Tru1I	TTAA	1 cut(s)	171
Tru9I	TTAA	1 cut(s)	171
TseI	GCWGC	1 cut(s)	178
TspDTI	ATGAA	2 cut(s)	386, 506
VpaK11BI	GGWCC	1 cut(s)	476
XapI	RAATTY	2 cut(s)	208, 255
XbaI	TCTAGA	1 cut(s)	17
XhoI	CTCGAG	1 cut(s)	427
XspI	CTAG	1 cut(s)	18

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.