Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0000935.1

Orthogroup ID

OG0018895

Physical Location & Seq

Genomic Coordinates Forward (+)

127860 .. 128180

Gene Structure 321 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0000935.1_g000025.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 321 bp

atgtctctgagacccaaatccatcaccagccttccacacctctctgagcatgtcactaatcatgtctcaaatgggtctcccccagacgaccatctgcatctcttcttcaaatccagaccgaaccaaacccacatcgactacgaccgccaatttgtctctgctctaaaatcttgcgcaaccctttcggccctcttgcaaggccagcaactccattcccttgttctcaagtccggtctcgactccaacactttcatcaacaacagtttgattagcatgtacgccaaatgcggctccatttccggcgccgaatcgttgtactga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000959 GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0016070 GO:0016071 GO:0016556 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0046483 GO:0071704 GO:0080156 GO:0090304 GO:0090305 GO:0097159 GO:1900864 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PPR PPR_2

Protein Analysis

106

Amino Acids

11.65

Weight (kDa)

7.88

Isoelectric Point (pI)

44.53

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0018895)

Species	Orthologous Gene IDs
malus_domestica	MD16G1182800.v1.1
rosa_chinensis	RchiOBHm_Chr4g0418811
rosa_multiflora	Rmu_sc0000935.1_g000025 Rmu_sc0000935.1_g000032 Rmu_sc0006705.1_g000001 Rmu_sc0020345.1_g000004
rosa_samantha	Rh4AG216500 Rh4CG228500
rosa_wichuraiana	Rw4G018470

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	175
AccB1I	GGYRCC	1 cut(s)	302
AciI	CCGC	2 cut(s)	145, 288
AcyI	GRCGYC	1 cut(s)	303
AfaI	GTAC	2 cut(s)	278, 317
AgsI	TTSAA	1 cut(s)	109
Alw26I	GTCTC	6 cut(s)	4, 9, 70, 81, 160, 239
AoxI	GGCC	2 cut(s)	186, 199
ArsI	GACNNNNNNTTYG	2 cut(s)	134, 166
AspLEI	GCGC	2 cut(s)	176, 305
AspS9I	GGNCC	1 cut(s)	187
AsuHPI	GGTGA	1 cut(s)	16
BanI	GGYRCC	1 cut(s)	302
BccI	CCATC	2 cut(s)	29, 99
BcgI	CGANNNNNNTGC	2 cut(s)	165, 199
BcoDI	GTCTC	6 cut(s)	4, 9, 70, 81, 160, 239
BfoI	RGCGCY	1 cut(s)	306
BisI	GCNGC	1 cut(s)	289
BlsI	GCNGC	1 cut(s)	290
BmgT120I	GGNCC	1 cut(s)	187
BmiI	GGNNCC	2 cut(s)	292, 304
BmsI	GCATC	1 cut(s)	106
BpuEI	CTTGAG	1 cut(s)	209
BsaHI	GRCGYC	1 cut(s)	303
BsaI	GGTCTC	3 cut(s)	4, 81, 239
BsaWI	WCCGGW	1 cut(s)	230
BseMII	CTCAG	1 cut(s)	36
Bsh1285I	CGRYCG	1 cut(s)	145
BshFI	GGCC	2 cut(s)	188, 201
BshNI	GGYRCC	1 cut(s)	302
BsiEI	CGRYCG	1 cut(s)	145
BsiSI	CCGG	2 cut(s)	231, 300
BsmAI	GTCTC	6 cut(s)	4, 9, 70, 81, 160, 239
BsnI	GGCC	2 cut(s)	188, 201
Bso31I	GGTCTC	3 cut(s)	4, 81, 239
BspACI	CCGC	2 cut(s)	145, 288
BspANI	GGCC	2 cut(s)	188, 201
BspCNI	CTCAG	1 cut(s)	37
BspLI	GGNNCC	2 cut(s)	292, 304
BspT107I	GGYRCC	1 cut(s)	302
BspTNI	GGTCTC	3 cut(s)	4, 81, 239
BssNI	GRCGYC	1 cut(s)	303
Bst4CI	ACNGT	1 cut(s)	263
Bst6I	CTCTTC	1 cut(s)	107
BstACI	GRCGYC	1 cut(s)	303
BstC8I	GCNNGC	1 cut(s)	203
BstDEI	CTNAG	2 cut(s)	8, 45
BstH2I	RGCGCY	1 cut(s)	306
BstHHI	GCGC	2 cut(s)	176, 305
BstMAI	GTCTC	6 cut(s)	4, 9, 70, 81, 160, 239
BstMCI	CGRYCG	1 cut(s)	145
BstMWI	GCNNNNNNNGC	1 cut(s)	202
BstNSI	RCATGY	2 cut(s)	53, 277
BsuRI	GGCC	2 cut(s)	188, 201
Cac8I	GCNNGC	1 cut(s)	203
CfoI	GCGC	2 cut(s)	176, 305
Cfr13I	GGNCC	1 cut(s)	187
Csp6I	GTAC	2 cut(s)	277, 316
CviAII	CATG	3 cut(s)	50, 62, 274
CviJI	RGCY	4 cut(s)	30, 188, 201, 291
CviKI_1	RGCY	4 cut(s)	30, 188, 201, 291
CviQI	GTAC	2 cut(s)	277, 316
DdeI	CTNAG	2 cut(s)	8, 45
DinI	GGCGCC	1 cut(s)	304
Eam1104I	CTCTTC	1 cut(s)	107
EarI	CTCTTC	1 cut(s)	107
Eco31I	GGTCTC	3 cut(s)	4, 81, 239
EgeI	GGCGCC	1 cut(s)	304
EheI	GGCGCC	1 cut(s)	304
FaeI	CATG	3 cut(s)	53, 65, 277
FaiI	YATR	3 cut(s)	51, 63, 275
FatI	CATG	3 cut(s)	49, 61, 273
Fnu4HI	GCNGC	1 cut(s)	289
Fsp4HI	GCNGC	1 cut(s)	289
FspI	TGCGCA	1 cut(s)	175
GlaI	GCGC	2 cut(s)	175, 304
GluI	GCNGC	1 cut(s)	289
HaeII	RGCGCY	1 cut(s)	306
HaeIII	GGCC	2 cut(s)	188, 201
HapII	CCGG	2 cut(s)	231, 300
HhaI	GCGC	2 cut(s)	176, 305
Hin1I	GRCGYC	1 cut(s)	303
Hin1II	CATG	3 cut(s)	53, 65, 277
Hin6I	GCGC	2 cut(s)	174, 303
HinP1I	GCGC	2 cut(s)	174, 303
HinfI	GANTC	2 cut(s)	239, 308
HpaII	CCGG	2 cut(s)	231, 300
HphI	GGTGA	1 cut(s)	16
Hpy188I	TCNGA	2 cut(s)	9, 46
Hpy188III	TCNNGA	2 cut(s)	114, 236
HpyAV	CCTTC	1 cut(s)	41
HpyCH4III	ACNGT	1 cut(s)	263
HpyCH4V	TGCA	2 cut(s)	97, 196
HpyF10VI	GCNNNNNNNGC	1 cut(s)	202
HpyF3I	CTNAG	2 cut(s)	8, 45
Hsp92I	GRCGYC	1 cut(s)	303
Hsp92II	CATG	3 cut(s)	53, 65, 277
HspAI	GCGC	2 cut(s)	174, 303
KasI	GGCGCC	1 cut(s)	302
LmnI	GCTCC	1 cut(s)	296
LpnPI	CCDG	6 cut(s)	40, 96, 127, 215, 244, 313
LweI	GCATC	1 cut(s)	106
MaeIII	GTNAC	1 cut(s)	52
MboII	GAAGA	2 cut(s)	94, 97
MluCI	AATT	1 cut(s)	149
Mly113I	GGCGCC	1 cut(s)	303
MlyI	GAGTC	1 cut(s)	233
MmeI	TCCRAC	1 cut(s)	267
MnlI	CCTC	2 cut(s)	50, 200
MspI	CCGG	2 cut(s)	231, 300
MwoI	GCNNNNNNNGC	1 cut(s)	202
NarI	GGCGCC	1 cut(s)	303
NlaIII	CATG	3 cut(s)	53, 65, 277
NlaIV	GGNNCC	2 cut(s)	292, 304
NmuCI	GTSAC	1 cut(s)	52
NsbI	TGCGCA	1 cut(s)	175
NspI	RCATGY	2 cut(s)	53, 277
PfeI	GAWTC	1 cut(s)	308
PkrI	GCNGC	1 cut(s)	290
PleI	GAGTC	1 cut(s)	233
PluTI	GGCGCC	1 cut(s)	306
PpsI	GAGTC	1 cut(s)	233
PspN4I	GGNNCC	2 cut(s)	292, 304
PspPI	GGNCC	1 cut(s)	187
RsaI	GTAC	2 cut(s)	278, 317
RsaNI	GTAC	2 cut(s)	277, 316
SatI	GCNGC	1 cut(s)	289
Sau96I	GGNCC	1 cut(s)	187
SchI	GAGTC	1 cut(s)	233
SetI	ASST	1 cut(s)	42
SfaNI	GCATC	1 cut(s)	106
SfoI	GGCGCC	1 cut(s)	304
SmlI	CTYRAG	1 cut(s)	224
SmoI	CTYRAG	1 cut(s)	224
Sse9I	AATT	1 cut(s)	149
SsiI	CCGC	2 cut(s)	145, 288
SspDI	GGCGCC	1 cut(s)	302
TaaI	ACNGT	1 cut(s)	263
TaqI	TCGA	2 cut(s)	135, 237
TaqII	GACCGA	1 cut(s)	133
TasI	AATT	1 cut(s)	149
TatI	WGTACW	1 cut(s)	315
TauI	GCSGC	1 cut(s)	291
TfiI	GAWTC	1 cut(s)	308
TseFI	GTSAC	1 cut(s)	52
Tsp45I	GTSAC	1 cut(s)	52
TspDTI	ATGAA	1 cut(s)	241
XceI	RCATGY	2 cut(s)	53, 277

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.