Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0006705.1

Orthogroup ID

OG0018895

Physical Location & Seq

Genomic Coordinates Reverse (-)

89 .. 559

Gene Structure 471 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0006705.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 471 bp

atgcttacatctctgagacccaaatccctcaccggccttccacacgtttctgctgcttcacctctcaaatgggtctccacagccaccacccaaaacccagacgaccatctgcgtctcttcttcaaattccgaacgaaccaaacccacatcgactacgagcgccaattggtctctgttctaaaatcttgcgcaaccctttcggccctcttgcaaggccagcaactccattcccttgttctcaagtccggtctcgactccaacactttcatgaacaacagtttgatcagcatgtatgccacatgctgctccatctccggcgccgaatcgttgttcggctcttgttctgagccggacccggtttcctgtaatatcatggttgctgggtatgtgaaatctggtgacttggacaatgcacgccagatgtttgataaaatgcctatgagaggttgtgtctcgtatgagtctttctag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000959 GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0016070 GO:0016071 GO:0016556 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0046483 GO:0071704 GO:0080156 GO:0090304 GO:0090305 GO:0097159 GO:1900864 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PPR PPR_2

Protein Analysis

156

Amino Acids

17.14

Weight (kDa)

7.62

Isoelectric Point (pI)

40.23

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0018895)

Species	Orthologous Gene IDs
malus_domestica	MD16G1182800.v1.1
rosa_chinensis	RchiOBHm_Chr4g0418811
rosa_multiflora	Rmu_sc0000935.1_g000025 Rmu_sc0000935.1_g000032 Rmu_sc0006705.1_g000001 Rmu_sc0020345.1_g000004
rosa_samantha	Rh4AG216500 Rh4CG228500
rosa_wichuraiana	Rw4G018470

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	190
AccB1I	GGYRCC	1 cut(s)	317
AcsI	RAATTY	1 cut(s)	125
AcyI	GRCGYC	1 cut(s)	318
AfiI	CCNNNNNNNGG	1 cut(s)	443
AflIII	ACRYGT	1 cut(s)	43
AgsI	TTSAA	1 cut(s)	124
Alw26I	GTCTC	6 cut(s)	10, 79, 119, 175, 254, 457
AoxI	GGCC	3 cut(s)	34, 201, 214
ApeKI	GCWGC	2 cut(s)	53, 303
ApoI	RAATTY	1 cut(s)	125
AspLEI	GCGC	3 cut(s)	162, 191, 320
AspS9I	GGNCC	2 cut(s)	202, 352
AsuC2I	CCSGG	1 cut(s)	356
AsuHPI	GGTGA	3 cut(s)	22, 51, 410
AvaII	GGWCC	1 cut(s)	352
BanI	GGYRCC	1 cut(s)	317
BbvI	GCAGC	2 cut(s)	40, 290
BccI	CCATC	2 cut(s)	114, 317
BcgI	CGANNNNNNTGC	2 cut(s)	180, 214
BclI	TGATCA	1 cut(s)	282
BcnI	CCSGG	1 cut(s)	356
BcoDI	GTCTC	6 cut(s)	10, 79, 119, 175, 254, 457
BfaI	CTAG	1 cut(s)	469
BfoI	RGCGCY	2 cut(s)	163, 321
BisI	GCNGC	2 cut(s)	54, 304
BlsI	GCNGC	2 cut(s)	55, 305
Bme1390I	CCNGG	1 cut(s)	356
Bme18I	GGWCC	1 cut(s)	352
BmgT120I	GGNCC	2 cut(s)	202, 352
BmiI	GGNNCC	2 cut(s)	319, 354
BmrFI	CCNGG	1 cut(s)	356
BpuEI	CTTGAG	1 cut(s)	224
BpuMI	CCSGG	1 cut(s)	356
BsaHI	GRCGYC	1 cut(s)	318
BsaI	GGTCTC	4 cut(s)	10, 79, 175, 254
BsaWI	WCCGGW	1 cut(s)	245
Bsc4I	CCNNNNNNNGG	1 cut(s)	443
Bse118I	RCCGGY	1 cut(s)	32
BseLI	CCNNNNNNNGG	1 cut(s)	443
BseMII	CTCAG	2 cut(s)	5, 336
BseXI	GCAGC	2 cut(s)	40, 290
BseYI	CCCAGC	1 cut(s)	380
BshFI	GGCC	3 cut(s)	36, 203, 216
BshNI	GGYRCC	1 cut(s)	317
BsiSI	CCGG	5 cut(s)	33, 246, 315, 350, 356
BslI	CCNNNNNNNGG	1 cut(s)	443
BsmAI	GTCTC	6 cut(s)	10, 79, 119, 175, 254, 457
BsmBI	CGTCTC	1 cut(s)	119
BsnI	GGCC	3 cut(s)	36, 203, 216
Bso31I	GGTCTC	4 cut(s)	10, 79, 175, 254
Bsp143I	GATC	1 cut(s)	282
BspANI	GGCC	3 cut(s)	36, 203, 216
BspCNI	CTCAG	2 cut(s)	6, 337
BspHI	TCATGA	1 cut(s)	267
BspLI	GGNNCC	2 cut(s)	319, 354
BspT107I	GGYRCC	1 cut(s)	317
BspTNI	GGTCTC	4 cut(s)	10, 79, 175, 254
BsrFI	RCCGGY	1 cut(s)	32
BssAI	RCCGGY	1 cut(s)	32
BssMI	GATC	1 cut(s)	282
BssNI	GRCGYC	1 cut(s)	318
Bst4CI	ACNGT	1 cut(s)	278
Bst6I	CTCTTC	1 cut(s)	122
BstACI	GRCGYC	1 cut(s)	318
BstC8I	GCNNGC	2 cut(s)	218, 415
BstDEI	CTNAG	2 cut(s)	14, 345
BstENI	CCTNNNNNAGG	1 cut(s)	441
BstH2I	RGCGCY	2 cut(s)	163, 321
BstHHI	GCGC	3 cut(s)	162, 191, 320
BstKTI	GATC	1 cut(s)	285
BstMAI	GTCTC	6 cut(s)	10, 79, 119, 175, 254, 457
BstMBI	GATC	1 cut(s)	282
BstMWI	GCNNNNNNNGC	1 cut(s)	217
BstNSI	RCATGY	2 cut(s)	292, 303
BstSCI	CCNGG	1 cut(s)	354
BstV1I	GCAGC	2 cut(s)	40, 290
BsuRI	GGCC	3 cut(s)	36, 203, 216
Cac8I	GCNNGC	2 cut(s)	218, 415
CciI	TCATGA	1 cut(s)	267
CfoI	GCGC	3 cut(s)	162, 191, 320
Cfr10I	RCCGGY	1 cut(s)	32
Cfr13I	GGNCC	2 cut(s)	202, 352
CseI	GACGC	1 cut(s)	101
CviAII	CATG	4 cut(s)	268, 289, 300, 373
CviJI	RGCY	6 cut(s)	36, 83, 203, 216, 336, 349
CviKI_1	RGCY	6 cut(s)	36, 83, 203, 216, 336, 349
DdeI	CTNAG	2 cut(s)	14, 345
DinI	GGCGCC	1 cut(s)	319
DpnI	GATC	1 cut(s)	284
DpnII	GATC	1 cut(s)	282
Eam1104I	CTCTTC	1 cut(s)	122
EarI	CTCTTC	1 cut(s)	122
Eco31I	GGTCTC	4 cut(s)	10, 79, 175, 254
Eco47I	GGWCC	1 cut(s)	352
EcoNI	CCTNNNNNAGG	1 cut(s)	441
EgeI	GGCGCC	1 cut(s)	319
EheI	GGCGCC	1 cut(s)	319
Esp3I	CGTCTC	1 cut(s)	119
FaeI	CATG	4 cut(s)	271, 292, 303, 376
FaiI	YATR	8 cut(s)	269, 290, 294, 301, 374, 387, 440, 459
FatI	CATG	4 cut(s)	267, 288, 299, 372
FbaI	TGATCA	1 cut(s)	282
Fnu4HI	GCNGC	2 cut(s)	54, 304
Fsp4HI	GCNGC	2 cut(s)	54, 304
FspBI	CTAG	1 cut(s)	469
FspI	TGCGCA	1 cut(s)	190
GlaI	GCGC	3 cut(s)	161, 190, 319
GluI	GCNGC	2 cut(s)	54, 304
GsaI	CCCAGC	1 cut(s)	384
HaeII	RGCGCY	2 cut(s)	163, 321
HaeIII	GGCC	3 cut(s)	36, 203, 216
HapII	CCGG	5 cut(s)	33, 246, 315, 350, 356
HgaI	GACGC	1 cut(s)	101
HhaI	GCGC	3 cut(s)	162, 191, 320
Hin1I	GRCGYC	1 cut(s)	318
Hin1II	CATG	4 cut(s)	271, 292, 303, 376
Hin6I	GCGC	3 cut(s)	160, 189, 318
HinP1I	GCGC	3 cut(s)	160, 189, 318
HinfI	GANTC	3 cut(s)	254, 323, 461
HpaII	CCGG	5 cut(s)	33, 246, 315, 350, 356
HphI	GGTGA	3 cut(s)	22, 51, 410
Hpy188I	TCNGA	3 cut(s)	15, 131, 346
Hpy188III	TCNNGA	2 cut(s)	251, 268
HpyAV	CCTTC	1 cut(s)	47
HpyCH4III	ACNGT	1 cut(s)	278
HpyCH4IV	ACGT	1 cut(s)	45
HpyCH4V	TGCA	2 cut(s)	211, 413
HpyF10VI	GCNNNNNNNGC	1 cut(s)	217
HpyF3I	CTNAG	2 cut(s)	14, 345
HpySE526I	ACGT	1 cut(s)	45
Hsp92I	GRCGYC	1 cut(s)	318
Hsp92II	CATG	4 cut(s)	271, 292, 303, 376
HspAI	GCGC	3 cut(s)	160, 189, 318
KasI	GGCGCC	1 cut(s)	317
Ksp22I	TGATCA	1 cut(s)	282
Kzo9I	GATC	1 cut(s)	282
LmnI	GCTCC	1 cut(s)	311
Lsp1109I	GCAGC	2 cut(s)	40, 290
MaeI	CTAG	1 cut(s)	469
MaeII	ACGT	1 cut(s)	45
MaeIII	GTNAC	1 cut(s)	398
MalI	GATC	1 cut(s)	284
MboI	GATC	1 cut(s)	282
MboII	GAAGA	2 cut(s)	109, 112
MfeI	CAATTG	1 cut(s)	164
MluCI	AATT	2 cut(s)	125, 164
Mly113I	GGCGCC	1 cut(s)	318
MlyI	GAGTC	2 cut(s)	248, 470
MmeI	TCCRAC	1 cut(s)	282
MnlI	CCTC	4 cut(s)	38, 72, 215, 437
MslI	CAYNNNNRTG	1 cut(s)	266
MspI	CCGG	5 cut(s)	33, 246, 315, 350, 356
MspR9I	CCNGG	1 cut(s)	356
MunI	CAATTG	1 cut(s)	164
MwoI	GCNNNNNNNGC	1 cut(s)	217
NarI	GGCGCC	1 cut(s)	318
NciI	CCSGG	1 cut(s)	356
NdeII	GATC	1 cut(s)	282
NlaIII	CATG	4 cut(s)	271, 292, 303, 376
NlaIV	GGNNCC	2 cut(s)	319, 354
NmuCI	GTSAC	1 cut(s)	398
NsbI	TGCGCA	1 cut(s)	190
NspI	RCATGY	2 cut(s)	292, 303
PagI	TCATGA	1 cut(s)	267
PfeI	GAWTC	1 cut(s)	323
PkrI	GCNGC	2 cut(s)	55, 305
PleI	GAGTC	2 cut(s)	248, 469
PluTI	GGCGCC	1 cut(s)	321
PpsI	GAGTC	2 cut(s)	248, 469
PspFI	CCCAGC	1 cut(s)	380
PspN4I	GGNNCC	2 cut(s)	319, 354
PspPI	GGNCC	2 cut(s)	202, 352
RseI	CAYNNNNRTG	1 cut(s)	266
SatI	GCNGC	2 cut(s)	54, 304
Sau3AI	GATC	1 cut(s)	282
Sau96I	GGNCC	2 cut(s)	202, 352
SchI	GAGTC	2 cut(s)	248, 470
ScrFI	CCNGG	1 cut(s)	356
SetI	ASST	3 cut(s)	48, 64, 448
SfoI	GGCGCC	1 cut(s)	319
SinI	GGWCC	1 cut(s)	352
SmiMI	CAYNNNNRTG	1 cut(s)	266
SmlI	CTYRAG	1 cut(s)	239
SmoI	CTYRAG	1 cut(s)	239
Sse9I	AATT	2 cut(s)	125, 164
SspDI	GGCGCC	1 cut(s)	317
SspMI	CTAG	1 cut(s)	469
StyD4I	CCNGG	1 cut(s)	354
TaaI	ACNGT	1 cut(s)	278
TaiI	ACGT	1 cut(s)	48
TaqI	TCGA	2 cut(s)	150, 252
TasI	AATT	2 cut(s)	125, 164
TfiI	GAWTC	1 cut(s)	323
TseFI	GTSAC	1 cut(s)	398
TseI	GCWGC	2 cut(s)	53, 303
Tsp45I	GTSAC	1 cut(s)	398
TspDTI	ATGAA	2 cut(s)	256, 284
VpaK11BI	GGWCC	1 cut(s)	352
XagI	CCTNNNNNAGG	1 cut(s)	441
XapI	RAATTY	1 cut(s)	125
XceI	RCATGY	2 cut(s)	292, 303
XspI	CTAG	1 cut(s)	469

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.