Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr16

Orthogroup ID

OG0015796

Physical Location & Seq

Genomic Coordinates Forward (+)

21423719 .. 21427410

Gene Structure 3692 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD16G1217200.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 975 bp

ATGGAACGTGGGGTTCTTGATAGTTTAATCAATAGGCTTCTTGAAGTGAGAGGCAGACCAGGGAAGCAAGTGCAGCTTCAGGAGAGTGAGATGAGGCAGCTGTGTCTTGTCTCCAAGGATATTTTTCTGAGGCAGCCTAATCTTTTGGAGCTTGATGCTCCTATCAAGATTTGTGGTGATATTCATGGTCAGTATGCAGATCTTCTGAGGCTTTTTGAGTATGGTGGATTACCCTCTCAGTCCAACTATCTGTTCTTGGGGGATTATGTTGATCGCGGGAAGCAAAGCCTAGAAACAATATGCCTTCTCCTTGCATATAAAATTAAGTATCCTGAGAATTTTTTCCTTCTGAGGGGTAACCATGAATGTGCTTCAATAAACCGAATATATGGCTTTTATGATGAGTGTAAACGAAGATTCAATGTCAAACTCTGGAAAGTGTTTACAGATTGTTTCAACTGCCTTCCCGTGGCAGCTCTCATTGATGAAAAAATACTCTGCATGCATGGAGGGCTATCTCCCGAGTTAAACAATTTAAATCAGATCAAGACCTTAAAGCGACCTACTGATGTCCCAGATAGTGGTTTGCTATGTGATCTCCTGTGGTCTGATCCTAGCAAAGACATTCGAGGTTGGGGACCAAATGATAGGGGAGTTTCCTTTACCTTCGGTGCTGATAGGGTAACAGAGTTTCTTCAGAAGCTTGATCTAGATTTAATTTGTCGAGCTCACCAGGTTGTCGAAGATGGATATGAGTTCTTTGCGAATAGGCAACTTGTGACAATATTTTCAGCACCTAATTACTGTGGTGAGTTTGACAATGCTGGGGCAATGATGAGTGTCGATGAGTCTCTTATGTGCTCTTTCCAGATATTGAAGCCTGATAAGAAGCCAAAGTTTAGCTTTGGGAGTAGAGCTGCACCTAAGCCGGGTACTCCATTGAAAGCCAAGTCGTTTCTTGGTGCAATGGCGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko03015 ko04022 ko04024 ko04113 ko04114 ko04218 ko04261 ko04270 ko04390 ko04510 ko04611 ko04720 ko04728 ko04750 ko04810 ko04910 ko04921 ko04931 ko05031 ko05034 ko05168 ko05205 map03015 map04022 map04024 map04113 map04114 map04218 map04261 map04270 map04390 map04510 map04611 map04720 map04728 map04750 map04810 map04910 map04921 map04931 map05031 map05034 map05168 map05205

Pfam Domains

Protein Families

Metallophos STPPase_N

Protein Analysis

325

Amino Acids

36.7

Weight (kDa)

6.88

Isoelectric Point (pI)

41.37

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
STPPase_N	PF16891	6 - 52	2e-19	Serine-threonine protein phosphatase N-terminal domain
Metallophos	PF00149	54 - 247	8.1e-51	Calcineurin-like phosphoesterase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0015796)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_4g03530
malus_domestica	MD16G1217200.v1.1
prunus_persica	Prupe.1G038500_v2.0.a1 Prupe.1G038500_v2.0.a1 Prupe.1G038500_v2.0.a1 Prupe.1G038500_v2.0.a1
pyrus_communis	pycom16g18150
rosa_chinensis	RchiOBHm_Chr4g0392801
rosa_laevigata	RLG00000009787
rosa_multiflora	Rmu_sc0000498.1_g000060
rosa_roxburghii	Rroxscaffold_5G00337900
rosa_rugosa	Rorug03G0340500 Rorug03G0340600
rosa_samantha	Rh4CG047500
rosa_wichuraiana	Rw4G003420

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	581
AccII	CGCG	1 cut(s)	276
AciI	CCGC	1 cut(s)	276
AclWI	GGATC	1 cut(s)	605
AcsI	RAATTY	1 cut(s)	337
AcuI	CTGAAG	2 cut(s)	62, 680
AfaI	GTAC	1 cut(s)	934
AfiI	CCNNNNNNNGG	4 cut(s)	352, 469, 581, 929
AgsI	TTSAA	6 cut(s)	44, 375, 421, 457, 877, 943
AjnI	CCWGG	2 cut(s)	58, 732
AjuI	GAANNNNNNNTTGG	2 cut(s)	236, 268
AluBI	AGCT	8 cut(s)	76, 100, 151, 476, 703, 728, 903, 917
AluI	AGCT	8 cut(s)	76, 100, 151, 476, 703, 728, 903, 917
Alw21I	GWGCWC	2 cut(s)	730, 863
Alw26I	GTCTC	2 cut(s)	115, 855
AlwI	GGATC	1 cut(s)	605
Ama87I	CYCGRG	1 cut(s)	521
ApeKI	GCWGC	5 cut(s)	73, 97, 133, 473, 917
ApoI	RAATTY	1 cut(s)	337
Asp700I	GAANNNNTTC	1 cut(s)	341
AspS9I	GGNCC	1 cut(s)	638
AsuC2I	CCSGG	1 cut(s)	930
AsuHPI	GGTGA	3 cut(s)	188, 722, 821
AvaI	CYCGRG	1 cut(s)	521
AvaII	GGWCC	1 cut(s)	638
BanII	GRGCYC	1 cut(s)	730
Bbv12I	GWGCWC	2 cut(s)	730, 863
BbvI	GCAGC	5 cut(s)	85, 109, 145, 485, 904
BccI	CCATC	1 cut(s)	740
BciT130I	CCWGG	2 cut(s)	60, 734
BciVI	GTATCC	1 cut(s)	339
BcnI	CCSGG	1 cut(s)	930
BcoDI	GTCTC	2 cut(s)	115, 855
BfaI	CTAG	3 cut(s)	290, 615, 710
BfuI	GTATCC	1 cut(s)	339
BglII	AGATCT	1 cut(s)	199
BisI	GCNGC	5 cut(s)	74, 98, 134, 474, 918
BlsI	GCNGC	5 cut(s)	75, 99, 135, 475, 919
Bme1390I	CCNGG	3 cut(s)	60, 734, 930
Bme18I	GGWCC	1 cut(s)	638
BmeT110I	CYCGRG	1 cut(s)	521
BmgT120I	GGNCC	1 cut(s)	638
BmiI	GGNNCC	1 cut(s)	639
BmrFI	CCNGG	3 cut(s)	60, 734, 930
BmsI	GCATC	1 cut(s)	145
Bpu10I	CCTNAGC	1 cut(s)	924
BpuMI	CCSGG	1 cut(s)	930
BsaJI	CCNNGG	3 cut(s)	59, 114, 468
Bsc4I	CCNNNNNNNGG	4 cut(s)	352, 469, 581, 929
Bse3DI	GCAATG	2 cut(s)	837, 972
BseBI	CCWGG	2 cut(s)	60, 734
BseDI	CCNNGG	3 cut(s)	59, 114, 468
BseLI	CCNNNNNNNGG	4 cut(s)	352, 469, 581, 929
BseMI	GCAATG	2 cut(s)	837, 972
BseMII	CTCAG	5 cut(s)	119, 197, 251, 324, 341
BseXI	GCAGC	5 cut(s)	85, 109, 145, 485, 904
BseYI	CCCAGC	1 cut(s)	824
BsgI	GTGCAG	2 cut(s)	92, 903
Bsh1236I	CGCG	1 cut(s)	276
BsiHKAI	GWGCWC	2 cut(s)	730, 863
BsiHKCI	CYCGRG	1 cut(s)	521
BsiSI	CCGG	1 cut(s)	929
BslFI	GGGAC	2 cut(s)	557, 651
BslI	CCNNNNNNNGG	4 cut(s)	352, 469, 581, 929
BsmAI	GTCTC	2 cut(s)	115, 855
BsmFI	GGGAC	2 cut(s)	557, 651
BsoBI	CYCGRG	1 cut(s)	521
Bsp1286I	GDGCHC	2 cut(s)	730, 863
Bsp143I	GATC	6 cut(s)	199, 271, 543, 595, 610, 706
BspACI	CCGC	1 cut(s)	276
BspCNI	CTCAG	5 cut(s)	120, 198, 250, 325, 342
BspFNI	CGCG	1 cut(s)	276
BspLI	GGNNCC	1 cut(s)	639
BspPI	GGATC	1 cut(s)	605
BsrDI	GCAATG	2 cut(s)	837, 972
BssECI	CCNNGG	3 cut(s)	59, 114, 468
BssMI	GATC	6 cut(s)	199, 271, 543, 595, 610, 706
BssT1I	CCWWGG	1 cut(s)	114
Bst2UI	CCWGG	2 cut(s)	60, 734
Bst4CI	ACNGT	1 cut(s)	806
BstC8I	GCNNGC	1 cut(s)	503
BstDEI	CTNAG	6 cut(s)	128, 206, 237, 333, 350, 924
BstDSI	CCRYGG	1 cut(s)	468
BstEII	GGTNACC	1 cut(s)	356
BstFNI	CGCG	1 cut(s)	276
BstKTI	GATC	6 cut(s)	202, 274, 546, 598, 613, 709
BstMAI	GTCTC	2 cut(s)	115, 855
BstMBI	GATC	6 cut(s)	199, 271, 543, 595, 610, 706
BstMWI	GCNNNNNNNGC	2 cut(s)	73, 511
BstNI	CCWGG	2 cut(s)	60, 734
BstNSI	RCATGY	1 cut(s)	505
BstPI	GGTNACC	1 cut(s)	356
BstSCI	CCNGG	3 cut(s)	58, 732, 928
BstUI	CGCG	1 cut(s)	276
BstV1I	GCAGC	5 cut(s)	85, 109, 145, 485, 904
BstX2I	RGATCY	1 cut(s)	199
BstYI	RGATCY	1 cut(s)	199
BsuI	GTATCC	1 cut(s)	339
BtgI	CCRYGG	1 cut(s)	468
Cac8I	GCNNGC	1 cut(s)	503
Cfr13I	GGNCC	1 cut(s)	638
CsiI	ACCWGGT	1 cut(s)	732
Csp6I	GTAC	1 cut(s)	933
CspCI	CAANNNNNGTGG	2 cut(s)	154, 189
CviAII	CATG	4 cut(s)	185, 362, 502, 506
CviQI	GTAC	1 cut(s)	933
DdeI	CTNAG	6 cut(s)	128, 206, 237, 333, 350, 924
DpnI	GATC	6 cut(s)	201, 273, 545, 597, 612, 708
DpnII	GATC	6 cut(s)	199, 271, 543, 595, 610, 706
DraI	TTTAAA	1 cut(s)	537
Ecl136II	GAGCTC	1 cut(s)	728
Eco130I	CCWWGG	1 cut(s)	114
Eco24I	GRGCYC	1 cut(s)	730
Eco47I	GGWCC	1 cut(s)	638
Eco53kI	GAGCTC	1 cut(s)	728
Eco57I	CTGAAG	2 cut(s)	62, 680
Eco88I	CYCGRG	1 cut(s)	521
Eco91I	GGTNACC	1 cut(s)	356
EcoICRI	GAGCTC	1 cut(s)	728
EcoO65I	GGTNACC	1 cut(s)	356
EcoRII	CCWGG	2 cut(s)	58, 732
EcoT14I	CCWWGG	1 cut(s)	114
EcoT22I	ATGCAT	1 cut(s)	507
EcoT38I	GRGCYC	1 cut(s)	730
ErhI	CCWWGG	1 cut(s)	114
FaeI	CATG	4 cut(s)	188, 365, 505, 509
FalI	AAGNNNNNCTT	4 cut(s)	60, 92, 887, 919
FaqI	GGGAC	2 cut(s)	557, 651
FatI	CATG	4 cut(s)	184, 361, 501, 505
FauI	CCCGC	1 cut(s)	269
Fnu4HI	GCNGC	5 cut(s)	74, 98, 134, 474, 918
FriOI	GRGCYC	1 cut(s)	730
Fsp4HI	GCNGC	5 cut(s)	74, 98, 134, 474, 918
FspBI	CTAG	3 cut(s)	290, 615, 710
GluI	GCNGC	5 cut(s)	74, 98, 134, 474, 918
GsaI	CCCAGC	1 cut(s)	828
HapII	CCGG	1 cut(s)	929
Hin1II	CATG	4 cut(s)	188, 365, 505, 509
HindIII	AAGCTT	1 cut(s)	701
HinfI	GANTC	2 cut(s)	417, 848
HpaII	CCGG	1 cut(s)	929
HphI	GGTGA	3 cut(s)	188, 722, 821
Hpy166II	GTNNAC	2 cut(s)	410, 444
Hpy188I	TCNGA	6 cut(s)	129, 207, 351, 543, 610, 699
Hpy8I	GTNNAC	2 cut(s)	410, 444
HpyAV	CCTTC	4 cut(s)	314, 356, 473, 676
HpyCH4III	ACNGT	1 cut(s)	806
HpyCH4IV	ACGT	1 cut(s)	7
HpyCH4V	TGCA	7 cut(s)	73, 197, 314, 501, 505, 920, 965
HpyF10VI	GCNNNNNNNGC	2 cut(s)	73, 511
HpyF3I	CTNAG	6 cut(s)	128, 206, 237, 333, 350, 924
HpySE526I	ACGT	1 cut(s)	7
Hsp92II	CATG	4 cut(s)	188, 365, 505, 509
Kzo9I	GATC	6 cut(s)	199, 271, 543, 595, 610, 706
LmnI	GCTCC	2 cut(s)	148, 163
Lsp1109I	GCAGC	5 cut(s)	85, 109, 145, 485, 904
LweI	GCATC	1 cut(s)	145
MabI	ACCWGGT	1 cut(s)	732
MaeI	CTAG	3 cut(s)	290, 615, 710
MaeII	ACGT	1 cut(s)	7
MaeIII	GTNAC	3 cut(s)	356, 682, 778
MalI	GATC	6 cut(s)	201, 273, 545, 597, 612, 708
MboI	GATC	6 cut(s)	199, 271, 543, 595, 610, 706
MboII	GAAGA	4 cut(s)	194, 426, 686, 755
MflI	RGATCY	1 cut(s)	199
MhlI	GDGCHC	2 cut(s)	730, 863
MluCI	AATT	5 cut(s)	321, 337, 532, 717, 799
MlyI	GAGTC	1 cut(s)	857
MmeI	TCCRAC	1 cut(s)	267
MnlI	CCTC	8 cut(s)	44, 87, 123, 201, 244, 345, 503, 623
Mph1103I	ATGCAT	1 cut(s)	507
MroXI	GAANNNNTTC	1 cut(s)	341
MseI	TTAA	6 cut(s)	26, 324, 527, 536, 554, 716
MslI	CAYNNNNRTG	1 cut(s)	366
MspA1I	CMGCKG	1 cut(s)	100
MspI	CCGG	1 cut(s)	929
MspR9I	CCNGG	3 cut(s)	60, 734, 930
MvaI	CCWGG	2 cut(s)	60, 734
MvnI	CGCG	1 cut(s)	276
MwoI	GCNNNNNNNGC	2 cut(s)	73, 511
NciI	CCSGG	1 cut(s)	930
NdeII	GATC	6 cut(s)	199, 271, 543, 595, 610, 706
NlaIII	CATG	4 cut(s)	188, 365, 505, 509
NlaIV	GGNNCC	1 cut(s)	639
NmuCI	GTSAC	1 cut(s)	778
NsiI	ATGCAT	1 cut(s)	507
NspI	RCATGY	1 cut(s)	505
PaeI	GCATGC	1 cut(s)	505
PdmI	GAANNNNTTC	1 cut(s)	341
PfeI	GAWTC	1 cut(s)	417
PflMI	CCANNNNNTGG	1 cut(s)	581
PkrI	GCNGC	5 cut(s)	75, 99, 135, 475, 919
PleI	GAGTC	1 cut(s)	856
PpsI	GAGTC	1 cut(s)	856
Psp124BI	GAGCTC	1 cut(s)	730
Psp6I	CCWGG	2 cut(s)	58, 732
PspEI	GGTNACC	1 cut(s)	356
PspFI	CCCAGC	1 cut(s)	824
PspGI	CCWGG	2 cut(s)	58, 732
PspN4I	GGNNCC	1 cut(s)	639
PspPI	GGNCC	1 cut(s)	638
PsuI	RGATCY	1 cut(s)	199
PvuII	CAGCTG	1 cut(s)	100
RsaI	GTAC	1 cut(s)	934
RsaNI	GTAC	1 cut(s)	933
RseI	CAYNNNNRTG	1 cut(s)	366
SacI	GAGCTC	1 cut(s)	730
SaqAI	TTAA	6 cut(s)	26, 324, 527, 536, 554, 716
SatI	GCNGC	5 cut(s)	74, 98, 134, 474, 918
Sau3AI	GATC	6 cut(s)	199, 271, 543, 595, 610, 706
Sau96I	GGNCC	1 cut(s)	638
SchI	GAGTC	1 cut(s)	857
ScrFI	CCNGG	3 cut(s)	60, 734, 930
SduI	GDGCHC	2 cut(s)	730, 863
SexAI	ACCWGGT	1 cut(s)	732
SfaNI	GCATC	1 cut(s)	145
SinI	GGWCC	1 cut(s)	638
SmiI	ATTTAAAT	1 cut(s)	537
SmiMI	CAYNNNNRTG	1 cut(s)	366
SphI	GCATGC	1 cut(s)	505
Sse9I	AATT	5 cut(s)	321, 337, 532, 717, 799
SsiI	CCGC	1 cut(s)	276
SspI	AATATT	1 cut(s)	786
SspMI	CTAG	3 cut(s)	290, 615, 710
SstI	GAGCTC	1 cut(s)	730
StyD4I	CCNGG	3 cut(s)	58, 732, 928
StyI	CCWWGG	1 cut(s)	114
SwaI	ATTTAAAT	1 cut(s)	537
TaaI	ACNGT	1 cut(s)	806
TaiI	ACGT	1 cut(s)	10
TaqI	TCGA	4 cut(s)	628, 724, 741, 843
TasI	AATT	5 cut(s)	321, 337, 532, 717, 799
TfiI	GAWTC	1 cut(s)	417
Tru1I	TTAA	6 cut(s)	26, 324, 527, 536, 554, 716
Tru9I	TTAA	6 cut(s)	26, 324, 527, 536, 554, 716
TseFI	GTSAC	1 cut(s)	778
TseI	GCWGC	5 cut(s)	73, 97, 133, 473, 917
Tsp45I	GTSAC	1 cut(s)	778
TspDTI	ATGAA	3 cut(s)	173, 378, 501
Van91I	CCANNNNNTGG	1 cut(s)	581
VpaK11BI	GGWCC	1 cut(s)	638
XapI	RAATTY	1 cut(s)	337
XbaI	TCTAGA	1 cut(s)	709
XceI	RCATGY	1 cut(s)	505
XmnI	GAANNNNTTC	1 cut(s)	341
XspI	CTAG	3 cut(s)	290, 615, 710
Zsp2I	ATGCAT	1 cut(s)	507

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.