Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr2

Orthogroup ID

OG0015796

Physical Location & Seq

Genomic Coordinates Reverse (-)

57762414 .. 57765654

Gene Structure 3241 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000009787

Sequence Viewer

CDS Protein Promoter (2k)

Length: 975 bp

ATGGAAACTGCGGTTCTTGATTCCATAATCTATAGGCTTCTTGAAGTGAAAGGGAAGCCAGGGAAGCTTGTGCAGCTTCAAGAGTCTGAGATTAGACAGCTCTGTGTTGTGTCTAGAGCTATTTTCTTGAGGCAGCCTAATCTTTTGGAGCTTGATGCACCCATCAAGATTTGTGGTGATATTCATGGTCAGTATTCAGATCTTCTGAGGCTTTTTGAGTTTGGACCACCTTCTCACGCCAACTACTTATTCTTGGGGGACTATGTAGATCGAGGAAAGCAAAGCCTAGAAACAATATGCCTTCTCCTTGCATATAAAATTAAGTATCCTGAGAATTTTTTCCTTCTGAGGGGAAACCATGAATGTGCTTCAATTAACCGAATATATGGGTTTTATGATGAGTGTAAACGGAGGTTCAATGTCAGACTCTGGAAACTATTTACAGATTGCTTCAACTGCCTTCCTGTGGCAGCTCTCATTGATGAAAAAATACTCTGCATGCATGGTGGACTGTCTCCCGAGTTAAATAATCTAAATCAAATTAAGAATTTGCCAAGACCTACTGATGTTCCTGAAAGTGGTTTGCTATGTGATCTCCTCTGGTCTGATCCAAGCAAAGACATCCAAGGCTGGGGACCAAATGACAGGGGAGTTTCCTTTACCTTTGGTGCTGAGAAGGTGACAGAGTTTCTTCAGAGGCATGATCTAGACTTAGTTTGTCGAGCTCACCAGGTTGTAGAAGATGGATATGAATTCTTTGCTAATAGACAACTTGTAACCATATTTTCGGCTCCTAATTACTGTGGGGAGTTTGACAATGCTGGGGCGATGATGAACGTGGATGAGTCTCTTATGTGTTCTTTCCAGATATTAAAGCCTGCTGATAAGAAGCTAAAGTTTGGGTTTGGGAGTAGAGCGGCATCTAAGCCGGGTACTCCGATGAAAGTCAAGTCATTTATTGGCGGAATGGTGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko03015 ko04022 ko04024 ko04113 ko04114 ko04218 ko04261 ko04270 ko04390 ko04510 ko04611 ko04720 ko04728 ko04750 ko04810 ko04910 ko04921 ko04931 ko05031 ko05034 ko05168 ko05205 map03015 map04022 map04024 map04113 map04114 map04218 map04261 map04270 map04390 map04510 map04611 map04720 map04728 map04750 map04810 map04910 map04921 map04931 map05031 map05034 map05168 map05205

Pfam Domains

Protein Families

Metallophos STPPase_N

Protein Analysis

325

Amino Acids

36.68

Weight (kDa)

6.33

Isoelectric Point (pI)

37.59

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
STPPase_N	PF16891	6 - 52	1.1e-19	Serine-threonine protein phosphatase N-terminal domain
Metallophos	PF00149	54 - 246	6.9e-52	Calcineurin-like phosphoesterase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0015796)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_4g03530
malus_domestica	MD16G1217200.v1.1
prunus_persica	Prupe.1G038500_v2.0.a1 Prupe.1G038500_v2.0.a1 Prupe.1G038500_v2.0.a1 Prupe.1G038500_v2.0.a1
pyrus_communis	pycom16g18150
rosa_chinensis	RchiOBHm_Chr4g0392801
rosa_laevigata	RLG00000009787
rosa_multiflora	Rmu_sc0000498.1_g000060
rosa_roxburghii	Rroxscaffold_5G00337900
rosa_rugosa	Rorug03G0340500 Rorug03G0340600
rosa_samantha	Rh4CG047500
rosa_wichuraiana	Rw4G003420

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	917
AciI	CCGC	3 cut(s)	11, 917, 963
AclWI	GGATC	1 cut(s)	602
AcsI	RAATTY	3 cut(s)	334, 547, 752
AcuI	CTGAAG	1 cut(s)	677
AfaI	GTAC	1 cut(s)	934
AfiI	CCNNNNNNNGG	4 cut(s)	349, 466, 578, 631
AgsI	TTSAA	5 cut(s)	44, 80, 372, 418, 454
AjnI	CCWGG	2 cut(s)	58, 729
AjuI	GAANNNNNNNTTGG	2 cut(s)	233, 265
AluBI	AGCT	8 cut(s)	67, 76, 100, 119, 151, 473, 725, 892
AluI	AGCT	8 cut(s)	67, 76, 100, 119, 151, 473, 725, 892
Alw21I	GWGCWC	1 cut(s)	727
Alw26I	GTCTC	2 cut(s)	519, 852
AlwI	GGATC	1 cut(s)	602
AlwNI	CAGNNNCTG	1 cut(s)	429
Ama87I	CYCGRG	1 cut(s)	518
ApeKI	GCWGC	3 cut(s)	73, 133, 470
ApoI	RAATTY	3 cut(s)	334, 547, 752
Asp700I	GAANNNNTTC	1 cut(s)	338
AspS9I	GGNCC	2 cut(s)	224, 635
AsuC2I	CCSGG	1 cut(s)	930
AsuHPI	GGTGA	3 cut(s)	188, 691, 719
AvaI	CYCGRG	1 cut(s)	518
AvaII	GGWCC	2 cut(s)	224, 635
BanII	GRGCYC	1 cut(s)	727
Bbv12I	GWGCWC	1 cut(s)	727
BbvI	GCAGC	3 cut(s)	85, 145, 482
BccI	CCATC	2 cut(s)	170, 737
BciT130I	CCWGG	2 cut(s)	60, 731
BciVI	GTATCC	1 cut(s)	336
BcnI	CCSGG	1 cut(s)	930
BcoDI	GTCTC	2 cut(s)	519, 852
BfaI	CTAG	3 cut(s)	114, 287, 707
BfmI	CTRYAG	1 cut(s)	31
BfuI	GTATCC	1 cut(s)	336
BglII	AGATCT	1 cut(s)	199
BisI	GCNGC	4 cut(s)	74, 134, 471, 918
BlsI	GCNGC	4 cut(s)	75, 135, 472, 919
Bme1390I	CCNGG	3 cut(s)	60, 731, 930
Bme18I	GGWCC	2 cut(s)	224, 635
BmeT110I	CYCGRG	1 cut(s)	518
BmgT120I	GGNCC	2 cut(s)	224, 635
BmiI	GGNNCC	2 cut(s)	636, 792
BmrFI	CCNGG	3 cut(s)	60, 731, 930
BmsI	GCATC	2 cut(s)	145, 929
BpuEI	CTTGAG	1 cut(s)	148
BpuMI	CCSGG	1 cut(s)	930
BsaJI	CCNNGG	2 cut(s)	59, 625
Bsc4I	CCNNNNNNNGG	4 cut(s)	349, 466, 578, 631
BseBI	CCWGG	2 cut(s)	60, 731
BseDI	CCNNGG	2 cut(s)	59, 625
BseGI	GGATG	2 cut(s)	621, 847
BseLI	CCNNNNNNNGG	4 cut(s)	349, 466, 578, 631
BseMII	CTCAG	5 cut(s)	78, 197, 321, 338, 663
BseRI	GAGGAG	1 cut(s)	587
BseXI	GCAGC	3 cut(s)	85, 145, 482
BseYI	CCCAGC	2 cut(s)	630, 821
BsgI	GTGCAG	1 cut(s)	92
BsiHKAI	GWGCWC	1 cut(s)	727
BsiHKCI	CYCGRG	1 cut(s)	518
BsiSI	CCGG	1 cut(s)	929
BslFI	GGGAC	2 cut(s)	272, 648
BslI	CCNNNNNNNGG	4 cut(s)	349, 466, 578, 631
BsmAI	GTCTC	2 cut(s)	519, 852
BsmFI	GGGAC	2 cut(s)	272, 648
BsoBI	CYCGRG	1 cut(s)	518
Bsp1286I	GDGCHC	1 cut(s)	727
Bsp143I	GATC	5 cut(s)	199, 268, 592, 607, 703
BspACI	CCGC	3 cut(s)	11, 917, 963
BspCNI	CTCAG	5 cut(s)	79, 198, 322, 339, 664
BspLI	GGNNCC	2 cut(s)	636, 792
BspPI	GGATC	1 cut(s)	602
BsrBI	CCGCTC	1 cut(s)	917
BssECI	CCNNGG	2 cut(s)	59, 625
BssMI	GATC	5 cut(s)	199, 268, 592, 607, 703
BssT1I	CCWWGG	1 cut(s)	625
Bst2UI	CCWGG	2 cut(s)	60, 731
Bst4CI	ACNGT	2 cut(s)	513, 803
BstC8I	GCNNGC	2 cut(s)	500, 879
BstDEI	CTNAG	7 cut(s)	87, 206, 330, 347, 672, 712, 924
BstF5I	GGATG	2 cut(s)	621, 847
BstKTI	GATC	5 cut(s)	202, 271, 595, 610, 706
BstMAI	GTCTC	2 cut(s)	519, 852
BstMBI	GATC	5 cut(s)	199, 268, 592, 607, 703
BstMWI	GCNNNNNNNGC	3 cut(s)	64, 73, 456
BstNI	CCWGG	2 cut(s)	60, 731
BstNSI	RCATGY	1 cut(s)	502
BstSCI	CCNGG	3 cut(s)	58, 729, 928
BstSFI	CTRYAG	1 cut(s)	31
BstV1I	GCAGC	3 cut(s)	85, 145, 482
BstX2I	RGATCY	1 cut(s)	199
BstYI	RGATCY	1 cut(s)	199
BsuI	GTATCC	1 cut(s)	336
BtgZI	GCGATG	1 cut(s)	842
BtsCI	GGATG	2 cut(s)	621, 847
Cac8I	GCNNGC	2 cut(s)	500, 879
CaiI	CAGNNNCTG	1 cut(s)	429
Cfr13I	GGNCC	2 cut(s)	224, 635
CsiI	ACCWGGT	1 cut(s)	729
Csp6I	GTAC	1 cut(s)	933
CspCI	CAANNNNNGTGG	2 cut(s)	154, 189
CviAII	CATG	5 cut(s)	185, 359, 499, 503, 701
CviQI	GTAC	1 cut(s)	933
DdeI	CTNAG	7 cut(s)	87, 206, 330, 347, 672, 712, 924
DpnI	GATC	5 cut(s)	201, 270, 594, 609, 705
DpnII	GATC	5 cut(s)	199, 268, 592, 607, 703
Ecl136II	GAGCTC	1 cut(s)	725
Eco130I	CCWWGG	1 cut(s)	625
Eco24I	GRGCYC	1 cut(s)	727
Eco47I	GGWCC	2 cut(s)	224, 635
Eco53kI	GAGCTC	1 cut(s)	725
Eco57I	CTGAAG	1 cut(s)	677
Eco88I	CYCGRG	1 cut(s)	518
EcoICRI	GAGCTC	1 cut(s)	725
EcoRI	GAATTC	1 cut(s)	752
EcoRII	CCWGG	2 cut(s)	58, 729
EcoT14I	CCWWGG	1 cut(s)	625
EcoT22I	ATGCAT	1 cut(s)	504
EcoT38I	GRGCYC	1 cut(s)	727
ErhI	CCWWGG	1 cut(s)	625
FaeI	CATG	5 cut(s)	188, 362, 502, 506, 704
FaqI	GGGAC	2 cut(s)	272, 648
FatI	CATG	5 cut(s)	184, 358, 498, 502, 700
Fnu4HI	GCNGC	4 cut(s)	74, 134, 471, 918
FokI	GGATG	2 cut(s)	608, 854
FriOI	GRGCYC	1 cut(s)	727
Fsp4HI	GCNGC	4 cut(s)	74, 134, 471, 918
FspBI	CTAG	3 cut(s)	114, 287, 707
GluI	GCNGC	4 cut(s)	74, 134, 471, 918
GsaI	CCCAGC	2 cut(s)	634, 825
HapII	CCGG	1 cut(s)	929
Hin1II	CATG	5 cut(s)	188, 362, 502, 506, 704
HindIII	AAGCTT	1 cut(s)	65
HinfI	GANTC	4 cut(s)	20, 83, 426, 845
HpaII	CCGG	1 cut(s)	929
HphI	GGTGA	3 cut(s)	188, 691, 719
Hpy166II	GTNNAC	2 cut(s)	407, 509
Hpy188I	TCNGA	8 cut(s)	88, 199, 207, 348, 425, 607, 696, 939
Hpy8I	GTNNAC	2 cut(s)	407, 509
HpyAV	CCTTC	5 cut(s)	240, 311, 353, 470, 670
HpyCH4III	ACNGT	2 cut(s)	513, 803
HpyCH4IV	ACGT	1 cut(s)	837
HpyCH4V	TGCA	5 cut(s)	73, 158, 311, 498, 502
HpyF10VI	GCNNNNNNNGC	3 cut(s)	64, 73, 456
HpyF3I	CTNAG	7 cut(s)	87, 206, 330, 347, 672, 712, 924
HpySE526I	ACGT	1 cut(s)	837
Hsp92II	CATG	5 cut(s)	188, 362, 502, 506, 704
Kzo9I	GATC	5 cut(s)	199, 268, 592, 607, 703
LmnI	GCTCC	2 cut(s)	148, 796
Lsp1109I	GCAGC	3 cut(s)	85, 145, 482
LweI	GCATC	2 cut(s)	145, 929
MabI	ACCWGGT	1 cut(s)	729
MaeI	CTAG	3 cut(s)	114, 287, 707
MaeII	ACGT	1 cut(s)	837
MaeIII	GTNAC	2 cut(s)	679, 775
MalI	GATC	5 cut(s)	201, 270, 594, 609, 705
MbiI	CCGCTC	1 cut(s)	917
MboI	GATC	5 cut(s)	199, 268, 592, 607, 703
MboII	GAAGA	3 cut(s)	194, 683, 752
MflI	RGATCY	1 cut(s)	199
MhlI	GDGCHC	1 cut(s)	727
MluCI	AATT	7 cut(s)	318, 334, 372, 540, 547, 752, 796
MlyI	GAGTC	3 cut(s)	92, 420, 854
MnlI	CCTC	7 cut(s)	123, 201, 266, 342, 405, 608, 690
Mph1103I	ATGCAT	1 cut(s)	504
MroXI	GAANNNNTTC	1 cut(s)	338
MseI	TTAA	5 cut(s)	321, 375, 524, 543, 872
MslI	CAYNNNNRTG	1 cut(s)	363
MspI	CCGG	1 cut(s)	929
MspR9I	CCNGG	3 cut(s)	60, 731, 930
MvaI	CCWGG	2 cut(s)	60, 731
MwoI	GCNNNNNNNGC	3 cut(s)	64, 73, 456
NciI	CCSGG	1 cut(s)	930
NdeII	GATC	5 cut(s)	199, 268, 592, 607, 703
NlaIII	CATG	5 cut(s)	188, 362, 502, 506, 704
NlaIV	GGNNCC	2 cut(s)	636, 792
NmuCI	GTSAC	1 cut(s)	679
NsiI	ATGCAT	1 cut(s)	504
NspI	RCATGY	1 cut(s)	502
PaeI	GCATGC	1 cut(s)	502
PdmI	GAANNNNTTC	1 cut(s)	338
PfeI	GAWTC	1 cut(s)	20
PkrI	GCNGC	4 cut(s)	75, 135, 472, 919
PleI	GAGTC	3 cut(s)	91, 420, 853
PpsI	GAGTC	3 cut(s)	91, 420, 853
Psp124BI	GAGCTC	1 cut(s)	727
Psp6I	CCWGG	2 cut(s)	58, 729
PspFI	CCCAGC	2 cut(s)	630, 821
PspGI	CCWGG	2 cut(s)	58, 729
PspN4I	GGNNCC	2 cut(s)	636, 792
PspPI	GGNCC	2 cut(s)	224, 635
PstNI	CAGNNNCTG	1 cut(s)	429
PsuI	RGATCY	1 cut(s)	199
RsaI	GTAC	1 cut(s)	934
RsaNI	GTAC	1 cut(s)	933
RseI	CAYNNNNRTG	1 cut(s)	363
SacI	GAGCTC	1 cut(s)	727
SaqAI	TTAA	5 cut(s)	321, 375, 524, 543, 872
SatI	GCNGC	4 cut(s)	74, 134, 471, 918
Sau3AI	GATC	5 cut(s)	199, 268, 592, 607, 703
Sau96I	GGNCC	2 cut(s)	224, 635
SchI	GAGTC	3 cut(s)	92, 420, 854
ScrFI	CCNGG	3 cut(s)	60, 731, 930
SduI	GDGCHC	1 cut(s)	727
SexAI	ACCWGGT	1 cut(s)	729
SfaNI	GCATC	2 cut(s)	145, 929
SfcI	CTRYAG	1 cut(s)	31
SinI	GGWCC	2 cut(s)	224, 635
SmiMI	CAYNNNNRTG	1 cut(s)	363
SmlI	CTYRAG	1 cut(s)	127
SmoI	CTYRAG	1 cut(s)	127
SphI	GCATGC	1 cut(s)	502
Sse9I	AATT	7 cut(s)	318, 334, 372, 540, 547, 752, 796
SsiI	CCGC	3 cut(s)	11, 917, 963
SspMI	CTAG	3 cut(s)	114, 287, 707
SstI	GAGCTC	1 cut(s)	727
StyD4I	CCNGG	3 cut(s)	58, 729, 928
StyI	CCWWGG	1 cut(s)	625
TaaI	ACNGT	2 cut(s)	513, 803
TaiI	ACGT	1 cut(s)	840
TaqI	TCGA	2 cut(s)	271, 721
TasI	AATT	7 cut(s)	318, 334, 372, 540, 547, 752, 796
TauI	GCSGC	1 cut(s)	920
TfiI	GAWTC	1 cut(s)	20
Tru1I	TTAA	5 cut(s)	321, 375, 524, 543, 872
Tru9I	TTAA	5 cut(s)	321, 375, 524, 543, 872
TseFI	GTSAC	1 cut(s)	679
TseI	GCWGC	3 cut(s)	73, 133, 470
Tsp45I	GTSAC	1 cut(s)	679
TspDTI	ATGAA	6 cut(s)	173, 375, 498, 765, 848, 956
TspGWI	ACGGA	1 cut(s)	424
VpaK11BI	GGWCC	2 cut(s)	224, 635
XapI	RAATTY	3 cut(s)	334, 547, 752
XbaI	TCTAGA	2 cut(s)	113, 706
XceI	RCATGY	1 cut(s)	502
XmnI	GAANNNNTTC	1 cut(s)	338
XspI	CTAG	3 cut(s)	114, 287, 707
Zsp2I	ATGCAT	1 cut(s)	504

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.