Rorug03G0340600

serine threonine-protein phosphatase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000003
OG0015796
Physical Location & Seq
Reverse (-)
40629163 .. 40633833
4671 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug03G0340600.1

Sequence Viewer

Length: 1506 bp
ATGGCCGAAAGGAATGCATCATCCCTTTTGATTATTACTCGGAAATCTTTGTTCTGTTTATTTACATTTACATCACTACTCTTCATACTATCTTGGGTCTTCCTGTTGCGTTCAAGCAGTCGCCCCCAATTCATAGACAATACATTGTTGCCTAATTCTAAGCTTCTTGCTGTGATTGACCATGCGATTTCTGCAACTGAGAGTCAAAATGATGTTGAACCCTCAGTTGGGAATCGATCCATCCTTGTAAATAAGGAAGAAGAAGAAAAATCATCATCTTCCTCCCGACCTAGTCGTGGTGTAAAATGTGACACCAATGAAAAAGAAGTTCTCAAGGTATTCATGTATGATTTACCCCCTGAGTTTCATTTTGGACTCTTAGATTGGAAACCCCAAGGAGCTACTGTTTGGCCAGATCTTCAAAGTAAAGTGCCGAGTTATCCTGGTGGCTTGAATTTGCAACACAGTATAGAATATTGGTTAACATTGGACCTCCTTGCTTCAGAACTTCCCAATCCCCCAAATGCACGTTTTGCAATCAGAGTGCGCAATGTCAGTGAATCTGATATTATATTTGTACCATTCTTTTCTTCCTTGAGCTATAACCGATTCTCCAAGATAGACCTACACCAAAAGAAGAGCAATAACAAGGCCCTTCAAGATATATTGGTTAAGTATTTGACAGCTCAAAAGGAATGGAAGGCCTCAGGGGGAAGAGACCACTTAATCGTGGCTCACCATCCAAATAGCCTTCTGGATGCGAGGATGAAGCTGTGGCCTGCAACTTTCATACTTTCAGACTTTGGGAGGTATCCTCCAAATGTAGCCAATGTGGAGAAAGACGTCATTGCACCGTACAATCATGTAATCAAAACCTTTGTAAATGATTCGTCTACTTTTGAGAGCCGTCCTACTTTGCTCTACTTCCAAGGAGCAATATACCGAAAAGATGGTGGTTTTGCTCGGCAAGAGTTATTCTATCTTCTTAAAGATGAAAAGGATGTACATTTTGCATTTGGGACTGTTCAGAAAAATGGAATAAGAAATGCTACGAAGGGAATGCATTCCTCCAAATTCTGTCTTAACATAGCCGGCGACACCCCATCATCGAATCGCCTTTTTGATGCTATTGCTAGCCACTGTGTGCCTGTTATCATCAGTGATGATATTGAACTCCCATATGAAGATGTGCTTGACTACTCTGAGTTCTGCATATTTGTTCGTACAAGTGATGCTGTTAAAAAGAACTATCTTATTAAGCTCATAAGAAGCATTGGTAGGGATGAGTGGACGCGAATGTGGAAGAGGTTACAGGAGGTTCAAAATTTCTACGAGTTTCAGTACCCATCAAAAGAGGGTGATGCAGTTCAGATGATATGGAAAGCAGTCGCTCGAAAGGTTCCTGGAATAAGATTGAAGTTACACAAGTCTAGACGGTACTCTCGTGCACCTATCCAGAATGAGAAGGGGTTAACAAGGATACCATCACCAAAAAACTTTTGGTAG

Protein Analysis

501

Amino Acids

57.44

Weight (kDa)

9.24

Isoelectric Point (pI)

48.59

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Exostosin_GT47 PF03016 109 - 419 9.5e-60 Exostosin GT47 domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0015796)

Species Orthologous Gene IDs
fragaria_vesca FvH4_4g03530
malus_domestica MD16G1217200.v1.1
prunus_persica Prupe.1G038500_v2.0.a1 Prupe.1G038500_v2.0.a1 Prupe.1G038500_v2.0.a1 Prupe.1G038500_v2.0.a1
pyrus_communis pycom16g18150
rosa_chinensis RchiOBHm_Chr4g0392801
rosa_laevigata RLG00000009787
rosa_multiflora Rmu_sc0000498.1_g000060
rosa_roxburghii Rroxscaffold_5G00337900
rosa_rugosa Rorug03G0340500 Rorug03G0340600
rosa_samantha Rh4CG047500
rosa_wichuraiana Rw4G003420

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 846
Acc16I TGCGCA 1 cut(s) 548
AccI GTMKAC 1 cut(s) 893
AccII CGCG 1 cut(s) 1294
AclWI GGATC 1 cut(s) 231
AcoI YGGCCR 2 cut(s) 3, 410
AcsI RAATTY 3 cut(s) 454, 1073, 1324
AcuI CTGAAG 1 cut(s) 486
AcyI GRCGYC 1 cut(s) 843
AdeI CACNNNGTG 1 cut(s) 1144
AfaI GTAC 6 cut(s) 579, 857, 1005, 1225, 1343, 1439
AfiI CCNNNNNNNGG 3 cut(s) 227, 228, 296
AgsI TTSAA 8 cut(s) 114, 218, 422, 454, 659, 1172, 1322, 1417
AjnI CCWGG 2 cut(s) 442, 1402
AjuI GAANNNNNNNTTGG 2 cut(s) 210, 242
AluBI AGCT 6 cut(s) 163, 401, 600, 686, 772, 1261
AluI AGCT 6 cut(s) 163, 401, 600, 686, 772, 1261
Alw21I GWGCWC 1 cut(s) 1450
Alw26I GTCTC 1 cut(s) 711
Alw44I GTGCAC 1 cut(s) 1446
AlwI GGATC 1 cut(s) 231
AoxI GGCC 5 cut(s) 3, 410, 651, 702, 776
ApaLI GTGCAC 1 cut(s) 1446
ApoI RAATTY 3 cut(s) 454, 1073, 1324
Asp700I GAANNNNTTC 1 cut(s) 1063
AspLEI GCGC 1 cut(s) 549
AspS9I GGNCC 2 cut(s) 490, 652
AsuHPI GGTGA 3 cut(s) 728, 1370, 1479
AsuNHI GCTAGC 1 cut(s) 1133
AvaII GGWCC 1 cut(s) 490
AxyI CCTNAGG 1 cut(s) 706
BaeGI GKGCMC 1 cut(s) 1450
BaeI ACNNNNGTAYC 2 cut(s) 1429, 1462
BalI TGGCCA 1 cut(s) 412
BauI CACGAG 1 cut(s) 1443
BbsI GAAGAC 1 cut(s) 91
Bbv12I GWGCWC 1 cut(s) 1450
BccI CCATC 6 cut(s) 248, 747, 944, 1111, 1354, 1492
BceAI ACGGC 1 cut(s) 891
BcgI CGANNNNNNTGC 3 cut(s) 30, 1042, 1076
BciT130I CCWGG 2 cut(s) 444, 1404
BciVI GTATCC 2 cut(s) 822, 1473
BcoDI GTCTC 1 cut(s) 711
BfaI CTAG 3 cut(s) 291, 1134, 1431
BfuI GTATCC 2 cut(s) 822, 1473
BglII AGATCT 1 cut(s) 415
Bme1390I CCNGG 2 cut(s) 444, 1404
Bme18I GGWCC 1 cut(s) 490
BmgT120I GGNCC 2 cut(s) 490, 652
BmiI GGNNCC 1 cut(s) 1401
BmrFI CCNGG 2 cut(s) 444, 1404
BmsI GCATC 5 cut(s) 26, 748, 1114, 1222, 1351
BmtI GCTAGC 1 cut(s) 1137
BpiI GAAGAC 1 cut(s) 91
BplI GAGNNNNNCTC 2 cut(s) 799, 831
BpuEI CTTGAG 2 cut(s) 317, 616
Bsa29I ATCGAT 1 cut(s) 235
BsaHI GRCGYC 1 cut(s) 843
BsaI GGTCTC 1 cut(s) 711
BsaJI CCNNGG 2 cut(s) 394, 928
BsaXI ACNNNNNCTCC 4 cut(s) 390, 420, 596, 626
Bsc4I CCNNNNNNNGG 3 cut(s) 227, 228, 296
Bse118I RCCGGY 1 cut(s) 1091
Bse21I CCTNAGG 1 cut(s) 706
Bse3DI GCAATG 2 cut(s) 556, 846
BseBI CCWGG 2 cut(s) 444, 1404
BseCI ATCGAT 1 cut(s) 235
BseDI CCNNGG 2 cut(s) 394, 928
BseGI GGATG 7 cut(s) 20, 240, 739, 763, 771, 1006, 1288
BseLI CCNNNNNNNGG 3 cut(s) 227, 228, 296
BseMI GCAATG 2 cut(s) 556, 846
BseMII CTCAG 5 cut(s) 189, 237, 351, 720, 1194
BseSI GKGCMC 1 cut(s) 1450
Bsh1236I CGCG 1 cut(s) 1294
BshFI GGCC 5 cut(s) 5, 412, 653, 704, 778
BshVI ATCGAT 1 cut(s) 235
BsiHKAI GWGCWC 1 cut(s) 1450
BsiSI CCGG 1 cut(s) 1092
BslFI GGGAC 1 cut(s) 1033
BslI CCNNNNNNNGG 3 cut(s) 227, 228, 296
BsmAI GTCTC 1 cut(s) 711
BsmFI GGGAC 1 cut(s) 1033
BsmI GAATGC 3 cut(s) 19, 1063, 1065
BsnI GGCC 5 cut(s) 5, 412, 653, 704, 778
Bso31I GGTCTC 1 cut(s) 711
Bsp1286I GDGCHC 1 cut(s) 1450
Bsp1407I TGTACA 1 cut(s) 1003
Bsp143I GATC 2 cut(s) 236, 415
BspANI GGCC 5 cut(s) 5, 412, 653, 704, 778
BspCNI CTCAG 5 cut(s) 190, 236, 352, 719, 1195
BspDI ATCGAT 1 cut(s) 235
BspFNI CGCG 1 cut(s) 1294
BspLI GGNNCC 1 cut(s) 1401
BspOI GCTAGC 1 cut(s) 1137
BspPI GGATC 1 cut(s) 231
BspQI GCTCTTC 1 cut(s) 632
BspTNI GGTCTC 1 cut(s) 711
BsrDI GCAATG 2 cut(s) 556, 846
BsrFI RCCGGY 1 cut(s) 1091
BsrGI TGTACA 1 cut(s) 1003
BssAI RCCGGY 1 cut(s) 1091
BssECI CCNNGG 2 cut(s) 394, 928
BssMI GATC 2 cut(s) 236, 415
BssNI GRCGYC 1 cut(s) 843
BssSI CACGAG 1 cut(s) 1443
BssT1I CCWWGG 2 cut(s) 394, 928
Bst2BI CACGAG 1 cut(s) 1443
Bst2UI CCWGG 2 cut(s) 444, 1404
Bst4CI ACNGT 6 cut(s) 406, 467, 855, 1024, 1142, 1437
Bst6I CTCTTC 4 cut(s) 86, 632, 709, 1298
BstACI GRCGYC 1 cut(s) 843
BstAPI GCANNNNNTGC 1 cut(s) 533
BstAUI TGTACA 1 cut(s) 1003
BstC8I GCNNGC 3 cut(s) 780, 1093, 1135
BstDEI CTNAG 7 cut(s) 159, 198, 223, 360, 379, 706, 1203
BstF5I GGATG 7 cut(s) 20, 240, 739, 763, 771, 1006, 1288
BstFNI CGCG 1 cut(s) 1294
BstHHI GCGC 1 cut(s) 549
BstKTI GATC 2 cut(s) 239, 418
BstMAI GTCTC 1 cut(s) 711
BstMBI GATC 2 cut(s) 236, 415
BstMWI GCNNNNNNNGC 2 cut(s) 191, 533
BstNI CCWGG 2 cut(s) 444, 1404
BstSCI CCNGG 2 cut(s) 442, 1402
BstSLI GKGCMC 1 cut(s) 1450
BstUI CGCG 1 cut(s) 1294
BstV2I GAAGAC 1 cut(s) 91
BstX2I RGATCY 1 cut(s) 415
BstYI RGATCY 1 cut(s) 415
Bsu15I ATCGAT 1 cut(s) 235
Bsu36I CCTNAGG 1 cut(s) 706
BsuI GTATCC 2 cut(s) 822, 1473
BsuRI GGCC 5 cut(s) 5, 412, 653, 704, 778
BsuTUI ATCGAT 1 cut(s) 235
BtsCI GGATG 7 cut(s) 20, 240, 739, 763, 771, 1006, 1288
BtsIMutI CAGTG 3 cut(s) 562, 1138, 1165
Cac8I GCNNGC 3 cut(s) 780, 1093, 1135
CfoI GCGC 1 cut(s) 549
Cfr10I RCCGGY 1 cut(s) 1091
Cfr13I GGNCC 2 cut(s) 490, 652
ClaI ATCGAT 1 cut(s) 235
CseI GACGC 1 cut(s) 1300
Csp6I GTAC 6 cut(s) 578, 856, 1004, 1224, 1342, 1438
CviAII CATG 3 cut(s) 182, 343, 863
CviQI GTAC 6 cut(s) 578, 856, 1004, 1224, 1342, 1438
DdeI CTNAG 7 cut(s) 159, 198, 223, 360, 379, 706, 1203
DpnI GATC 2 cut(s) 238, 417
DpnII GATC 2 cut(s) 236, 415
DraIII CACNNNGTG 1 cut(s) 1144
EaeI YGGCCR 2 cut(s) 3, 410
Eam1104I CTCTTC 4 cut(s) 86, 632, 709, 1298
EarI CTCTTC 4 cut(s) 86, 632, 709, 1298
Eco130I CCWWGG 2 cut(s) 394, 928
Eco147I AGGCCT 1 cut(s) 704
Eco31I GGTCTC 1 cut(s) 711
Eco47I GGWCC 1 cut(s) 490
Eco57I CTGAAG 1 cut(s) 486
Eco81I CCTNAGG 1 cut(s) 706
EcoO109I RGGNCCY 1 cut(s) 652
EcoRII CCWGG 2 cut(s) 442, 1402
EcoT14I CCWWGG 2 cut(s) 394, 928
EcoT22I ATGCAT 2 cut(s) 19, 1065
ErhI CCWWGG 2 cut(s) 394, 928
FaeI CATG 3 cut(s) 185, 346, 866
FalI AAGNNNNNCTT 2 cut(s) 1176, 1208
FaqI GGGAC 1 cut(s) 1033
FatI CATG 3 cut(s) 181, 342, 862
FauNDI CATATG 1 cut(s) 1180
FblI GTMKAC 1 cut(s) 893
FokI GGATG 7 cut(s) 7, 227, 726, 770, 778, 1013, 1295
FspBI CTAG 3 cut(s) 291, 1134, 1431
FspI TGCGCA 1 cut(s) 548
GlaI GCGC 1 cut(s) 548
HaeIII GGCC 5 cut(s) 5, 412, 653, 704, 778
HapII CCGG 1 cut(s) 1092
HgaI GACGC 1 cut(s) 1300
HhaI GCGC 1 cut(s) 549
Hin1I GRCGYC 1 cut(s) 843
Hin1II CATG 3 cut(s) 185, 346, 866
Hin6I GCGC 1 cut(s) 547
HinP1I GCGC 1 cut(s) 547
HincII GTYRAC 2 cut(s) 483, 1473
HindII GTYRAC 2 cut(s) 483, 1473
HindIII AAGCTT 1 cut(s) 161
HinfI GANTC 7 cut(s) 202, 232, 375, 560, 609, 887, 1111
HpaI GTTAAC 2 cut(s) 483, 1473
HpaII CCGG 1 cut(s) 1092
HphI GGTGA 3 cut(s) 728, 1370, 1479
Hpy166II GTNNAC 5 cut(s) 483, 894, 1290, 1448, 1473
Hpy188I TCNGA 8 cut(s) 42, 505, 542, 565, 799, 1029, 1204, 1371
Hpy188III TCNNGA 5 cut(s) 285, 659, 755, 1431, 1456
Hpy8I GTNNAC 5 cut(s) 483, 894, 1290, 1448, 1473
HpyAV CCTTC 5 cut(s) 665, 694, 761, 1048, 1459
HpyCH4III ACNGT 6 cut(s) 406, 467, 855, 1024, 1142, 1437
HpyCH4IV ACGT 2 cut(s) 529, 843
HpyF10VI GCNNNNNNNGC 2 cut(s) 191, 533
HpyF3I CTNAG 7 cut(s) 159, 198, 223, 360, 379, 706, 1203
HpySE526I ACGT 2 cut(s) 529, 843
Hsp92I GRCGYC 1 cut(s) 843
Hsp92II CATG 3 cut(s) 185, 346, 866
HspAI GCGC 1 cut(s) 547
KroI GCCGGC 1 cut(s) 1091
KroNI GCCGGC 1 cut(s) 1093
KspAI GTTAAC 2 cut(s) 483, 1473
Kzo9I GATC 2 cut(s) 236, 415
LguI GCTCTTC 1 cut(s) 632
LmnI GCTCC 2 cut(s) 398, 932
LweI GCATC 5 cut(s) 26, 748, 1114, 1222, 1351
MaeI CTAG 3 cut(s) 291, 1134, 1431
MaeII ACGT 2 cut(s) 529, 843
MaeIII GTNAC 3 cut(s) 308, 1308, 1419
MalI GATC 2 cut(s) 238, 417
MboI GATC 2 cut(s) 236, 415
MflI RGATCY 1 cut(s) 415
MhlI GDGCHC 1 cut(s) 1450
MlsI TGGCCA 1 cut(s) 412
MluCI AATT 5 cut(s) 128, 154, 454, 1073, 1324
MluNI TGGCCA 1 cut(s) 412
MlyI GAGTC 2 cut(s) 211, 369
Mox20I TGGCCA 1 cut(s) 412
Mph1103I ATGCAT 2 cut(s) 19, 1065
MroNI GCCGGC 1 cut(s) 1091
MroXI GAANNNNTTC 1 cut(s) 1063
MscI TGGCCA 1 cut(s) 412
MseI TTAA 8 cut(s) 482, 672, 725, 987, 1083, 1239, 1257, 1472
Msp20I TGGCCA 1 cut(s) 412
MspI CCGG 1 cut(s) 1092
MspR9I CCNGG 2 cut(s) 444, 1404
Mva1269I GAATGC 3 cut(s) 19, 1063, 1065
MvaI CCWGG 2 cut(s) 444, 1404
MvnI CGCG 1 cut(s) 1294
MwoI GCNNNNNNNGC 2 cut(s) 191, 533
NaeI GCCGGC 1 cut(s) 1093
NdeI CATATG 1 cut(s) 1180
NdeII GATC 2 cut(s) 236, 415
NgoMIV GCCGGC 1 cut(s) 1091
NheI GCTAGC 1 cut(s) 1133
NlaIII CATG 3 cut(s) 185, 346, 866
NlaIV GGNNCC 1 cut(s) 1401
NmeAIII GCCGAG 2 cut(s) 459, 943
NmuCI GTSAC 1 cut(s) 308
NsbI TGCGCA 1 cut(s) 548
NsiI ATGCAT 2 cut(s) 19, 1065
PceI AGGCCT 1 cut(s) 704
PciSI GCTCTTC 1 cut(s) 632
PcsI WCGNNNNNNNCGW 1 cut(s) 1441
PctI GAATGC 3 cut(s) 19, 1063, 1065
PdiI GCCGGC 1 cut(s) 1093
PdmI GAANNNNTTC 1 cut(s) 1063
PfeI GAWTC 5 cut(s) 232, 560, 609, 887, 1111
PflFI GACNNNGTC 1 cut(s) 291
PfoI TCCNGGA 1 cut(s) 1402
PleI GAGTC 2 cut(s) 210, 369
PpsI GAGTC 2 cut(s) 210, 369
Psp6I CCWGG 2 cut(s) 442, 1402
PspGI CCWGG 2 cut(s) 442, 1402
PspN4I GGNNCC 1 cut(s) 1401
PspPI GGNCC 2 cut(s) 490, 652
PsuI RGATCY 1 cut(s) 415
PsyI GACNNNGTC 1 cut(s) 291
RsaI GTAC 6 cut(s) 579, 857, 1005, 1225, 1343, 1439
RsaNI GTAC 6 cut(s) 578, 856, 1004, 1224, 1342, 1438
SapI GCTCTTC 1 cut(s) 632
SaqAI TTAA 8 cut(s) 482, 672, 725, 987, 1083, 1239, 1257, 1472
Sau3AI GATC 2 cut(s) 236, 415
Sau96I GGNCC 2 cut(s) 490, 652
SchI GAGTC 2 cut(s) 211, 369
ScrFI CCNGG 2 cut(s) 444, 1404
SduI GDGCHC 1 cut(s) 1450
SfaNI GCATC 5 cut(s) 26, 748, 1114, 1222, 1351
SinI GGWCC 1 cut(s) 490
SmlI CTYRAG 2 cut(s) 332, 595
SmoI CTYRAG 2 cut(s) 332, 595
Sse9I AATT 5 cut(s) 128, 154, 454, 1073, 1324
SseBI AGGCCT 1 cut(s) 704
SspI AATATT 1 cut(s) 476
SspMI CTAG 3 cut(s) 291, 1134, 1431
StuI AGGCCT 1 cut(s) 704
StyD4I CCNGG 2 cut(s) 442, 1402
StyI CCWWGG 2 cut(s) 394, 928
TaaI ACNGT 6 cut(s) 406, 467, 855, 1024, 1142, 1437
TaiI ACGT 2 cut(s) 532, 846
TaqI TCGA 3 cut(s) 235, 1109, 1393
TasI AATT 5 cut(s) 128, 154, 454, 1073, 1324
TatI WGTACW 1 cut(s) 1003
TfiI GAWTC 5 cut(s) 232, 560, 609, 887, 1111
Tru1I TTAA 8 cut(s) 482, 672, 725, 987, 1083, 1239, 1257, 1472
Tru9I TTAA 8 cut(s) 482, 672, 725, 987, 1083, 1239, 1257, 1472
TscAI CASTG 3 cut(s) 562, 1145, 1165
TseFI GTSAC 1 cut(s) 308
Tsp45I GTSAC 1 cut(s) 308
TspDTI ATGAA 9 cut(s) 73, 121, 331, 333, 356, 778, 782, 1008, 1197
TspRI CASTG 3 cut(s) 562, 1145, 1165
Tth111I GACNNNGTC 1 cut(s) 291
VneI GTGCAC 1 cut(s) 1446
VpaK11BI GGWCC 1 cut(s) 490
XapI RAATTY 3 cut(s) 454, 1073, 1324
XbaI TCTAGA 1 cut(s) 1430
XcmI CCANNNNNNNNNTGG 1 cut(s) 1497
XmiI GTMKAC 1 cut(s) 893
XmnI GAANNNNTTC 1 cut(s) 1063
XspI CTAG 3 cut(s) 291, 1134, 1431
ZraI GACGTC 1 cut(s) 844
Zsp2I ATGCAT 2 cut(s) 19, 1065
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.