Rorug03G0340500

serine threonine-protein phosphatase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000003
OG0015796
Physical Location & Seq
Reverse (-)
40627652 .. 40628566
915 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug03G0340500.1

Sequence Viewer

Length: 411 bp
ATGGCCCGTACAAAGCAGACTGCTCGGAAGTCGACCGGCGGCAAGGCTCCCCGGAAGCAACTGGCGACGAAGGCTGCCCGGAAGTCGGCCCCGACGACCGGAGGAGTGAAGAAGCCGCACAGGTACCGGCCTGGAACGGTGGCCCTACGTGAAATCCGAAAGTACCAGAAGAGCACGGAGCTGCTGATAAGGAAGCTTCCGTTCCAGAGGCTTGTTCGGGAAATAGCGCAGGACTTCAAGACGGACCTGCGTTTCCAGAGCCACGCCGTGTTGGCGCTGCAGGAGGCGGCGGAGGCCTACCTTGTTGGGCTCTTTGAGGATACCAATCTCTGCGCCATTCATGCCAAGCGTGTTACAATTATGCCTAAGGATATCCAGCTTGCTAGGAGAATCAGGGGTGAGAGGGCTTAA

Protein Analysis

136

Amino Acids

15.41

Weight (kDa)

11.15

Isoelectric Point (pI)

38.37

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Histone PF00125 44 - 131 1e-38 Core histone H2A/H2B/H3/H4 domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0015796)

Species Orthologous Gene IDs
fragaria_vesca FvH4_4g03530
malus_domestica MD16G1217200.v1.1
prunus_persica Prupe.1G038500_v2.0.a1 Prupe.1G038500_v2.0.a1 Prupe.1G038500_v2.0.a1 Prupe.1G038500_v2.0.a1
pyrus_communis pycom16g18150
rosa_chinensis RchiOBHm_Chr4g0392801
rosa_laevigata RLG00000009787
rosa_multiflora Rmu_sc0000498.1_g000060
rosa_roxburghii Rroxscaffold_5G00337900
rosa_rugosa Rorug03G0340500 Rorug03G0340600
rosa_samantha Rh4CG047500
rosa_wichuraiana Rw4G003420

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 255
Acc65I GGTACC 1 cut(s) 123
AccB1I GGYRCC 1 cut(s) 123
AccI GTMKAC 1 cut(s) 32
AciI CCGC 4 cut(s) 39, 116, 287, 290
AdeI CACNNNGTG 1 cut(s) 268
AfaI GTAC 3 cut(s) 10, 125, 164
AfiI CCNNNNNNNGG 2 cut(s) 85, 98
AgsI TTSAA 1 cut(s) 238
AjnI CCWGG 1 cut(s) 130
AluBI AGCT 3 cut(s) 181, 196, 379
AluI AGCT 3 cut(s) 181, 196, 379
Alw21I GWGCWC 1 cut(s) 176
AoxI GGCC 5 cut(s) 3, 87, 128, 141, 294
ApeKI GCWGC 3 cut(s) 74, 181, 277
Asp718I GGTACC 1 cut(s) 123
AspLEI GCGC 3 cut(s) 229, 277, 335
AspS9I GGNCC 4 cut(s) 4, 88, 142, 244
AsuC2I CCSGG 2 cut(s) 52, 79
AsuHPI GGTGA 1 cut(s) 410
AvaII GGWCC 1 cut(s) 244
AxyI CCTNAGG 1 cut(s) 366
BanI GGYRCC 1 cut(s) 123
BanII GRGCYC 1 cut(s) 312
Bbv12I GWGCWC 1 cut(s) 176
BbvI GCAGC 3 cut(s) 61, 168, 264
BceAI ACGGC 1 cut(s) 251
BcgI CGANNNNNNTGC 2 cut(s) 5, 39
BciT130I CCWGG 1 cut(s) 132
BciVI GTATCC 1 cut(s) 313
BcnI CCSGG 2 cut(s) 52, 79
BfaI CTAG 1 cut(s) 384
BfmI CTRYAG 1 cut(s) 278
BfoI RGCGCY 1 cut(s) 278
BfuAI ACCTGC 1 cut(s) 255
BfuI GTATCC 1 cut(s) 313
BglI GCCNNNNNGGC 1 cut(s) 272
BisI GCNGC 6 cut(s) 40, 75, 116, 182, 278, 288
BlsI GCNGC 6 cut(s) 41, 76, 117, 183, 279, 289
Bme1390I CCNGG 3 cut(s) 52, 79, 132
Bme18I GGWCC 1 cut(s) 244
BmgT120I GGNCC 4 cut(s) 4, 88, 142, 244
BmiI GGNNCC 3 cut(s) 48, 90, 125
BmrFI CCNGG 3 cut(s) 52, 79, 132
BpuMI CCSGG 2 cut(s) 52, 79
BsaAI YACGTR 1 cut(s) 149
BsaBI GATNNNNATC 1 cut(s) 324
BsaJI CCNNGG 1 cut(s) 50
BsaWI WCCGGW 1 cut(s) 98
Bsc4I CCNNNNNNNGG 2 cut(s) 85, 98
Bse118I RCCGGY 2 cut(s) 35, 126
Bse1I ACTGG 1 cut(s) 66
Bse21I CCTNAGG 1 cut(s) 366
Bse8I GATNNNNATC 1 cut(s) 324
BseBI CCWGG 1 cut(s) 132
BseDI CCNNGG 1 cut(s) 50
BseJI GATNNNNATC 1 cut(s) 324
BseLI CCNNNNNNNGG 2 cut(s) 85, 98
BseNI ACTGG 1 cut(s) 66
BseRI GAGGAG 1 cut(s) 117
BseXI GCAGC 3 cut(s) 61, 168, 264
Bsh1285I CGRYCG 2 cut(s) 36, 99
BshFI GGCC 5 cut(s) 5, 89, 130, 143, 296
BshNI GGYRCC 1 cut(s) 123
BsiEI CGRYCG 2 cut(s) 36, 99
BsiHKAI GWGCWC 1 cut(s) 176
BsiSI CCGG 5 cut(s) 36, 52, 79, 99, 127
BslI CCNNNNNNNGG 2 cut(s) 85, 98
BsnI GGCC 5 cut(s) 5, 89, 130, 143, 296
Bsp1286I GDGCHC 2 cut(s) 176, 312
BspACI CCGC 4 cut(s) 39, 116, 287, 290
BspANI GGCC 5 cut(s) 5, 89, 130, 143, 296
BspLI GGNNCC 3 cut(s) 48, 90, 125
BspMAI CTGCAG 1 cut(s) 282
BspMI ACCTGC 1 cut(s) 255
BspQI GCTCTTC 1 cut(s) 164
BspT107I GGYRCC 1 cut(s) 123
BsrFI RCCGGY 2 cut(s) 35, 126
BsrI ACTGG 1 cut(s) 66
BssAI RCCGGY 2 cut(s) 35, 126
BssECI CCNNGG 1 cut(s) 50
Bst2UI CCWGG 1 cut(s) 132
Bst4CI ACNGT 1 cut(s) 139
Bst6I CTCTTC 1 cut(s) 164
BstBAI YACGTR 1 cut(s) 149
BstC8I GCNNGC 1 cut(s) 381
BstDEI CTNAG 1 cut(s) 366
BstH2I RGCGCY 1 cut(s) 278
BstHHI GCGC 3 cut(s) 229, 277, 335
BstMCI CGRYCG 2 cut(s) 36, 99
BstMWI GCNNNNNNNGC 4 cut(s) 71, 272, 293, 341
BstNI CCWGG 1 cut(s) 132
BstSCI CCNGG 3 cut(s) 50, 77, 130
BstSFI CTRYAG 1 cut(s) 278
BstV1I GCAGC 3 cut(s) 61, 168, 264
Bsu36I CCTNAGG 1 cut(s) 366
BsuI GTATCC 1 cut(s) 313
BsuRI GGCC 5 cut(s) 5, 89, 130, 143, 296
BveI ACCTGC 1 cut(s) 255
Cac8I GCNNGC 1 cut(s) 381
CfoI GCGC 3 cut(s) 229, 277, 335
Cfr10I RCCGGY 2 cut(s) 35, 126
Cfr13I GGNCC 4 cut(s) 4, 88, 142, 244
Csp6I GTAC 3 cut(s) 9, 124, 163
CviAII CATG 1 cut(s) 341
CviQI GTAC 3 cut(s) 9, 124, 163
DdeI CTNAG 1 cut(s) 366
DraIII CACNNNGTG 1 cut(s) 268
Eam1104I CTCTTC 1 cut(s) 164
EarI CTCTTC 1 cut(s) 164
EciI GGCGGA 1 cut(s) 305
Eco147I AGGCCT 1 cut(s) 296
Eco24I GRGCYC 1 cut(s) 312
Eco32I GATATC 1 cut(s) 373
Eco47I GGWCC 1 cut(s) 244
Eco81I CCTNAGG 1 cut(s) 366
EcoRII CCWGG 1 cut(s) 130
EcoRV GATATC 1 cut(s) 373
EcoT38I GRGCYC 1 cut(s) 312
FaeI CATG 1 cut(s) 344
FaiI YATR 2 cut(s) 342, 362
FatI CATG 1 cut(s) 340
FblI GTMKAC 1 cut(s) 32
Fnu4HI GCNGC 6 cut(s) 40, 75, 116, 182, 278, 288
FriOI GRGCYC 1 cut(s) 312
Fsp4HI GCNGC 6 cut(s) 40, 75, 116, 182, 278, 288
FspBI CTAG 1 cut(s) 384
GlaI GCGC 3 cut(s) 228, 276, 334
GluI GCNGC 6 cut(s) 40, 75, 116, 182, 278, 288
HaeII RGCGCY 1 cut(s) 278
HaeIII GGCC 5 cut(s) 5, 89, 130, 143, 296
HapII CCGG 5 cut(s) 36, 52, 79, 99, 127
HhaI GCGC 3 cut(s) 229, 277, 335
Hin1II CATG 1 cut(s) 344
Hin6I GCGC 3 cut(s) 227, 275, 333
HinP1I GCGC 3 cut(s) 227, 275, 333
HincII GTYRAC 1 cut(s) 33
HindII GTYRAC 1 cut(s) 33
HindIII AAGCTT 1 cut(s) 194
HinfI GANTC 1 cut(s) 390
HpaII CCGG 5 cut(s) 36, 52, 79, 99, 127
HphI GGTGA 1 cut(s) 410
Hpy166II GTNNAC 1 cut(s) 33
Hpy188I TCNGA 2 cut(s) 27, 158
Hpy188III TCNNGA 4 cut(s) 205, 218, 238, 256
Hpy8I GTNNAC 1 cut(s) 33
Hpy99I CGWCG 2 cut(s) 70, 97
HpyAV CCTTC 1 cut(s) 64
HpyCH4III ACNGT 1 cut(s) 139
HpyCH4IV ACGT 1 cut(s) 148
HpyCH4V TGCA 1 cut(s) 280
HpyF10VI GCNNNNNNNGC 4 cut(s) 71, 272, 293, 341
HpyF3I CTNAG 1 cut(s) 366
HpySE526I ACGT 1 cut(s) 148
Hsp92II CATG 1 cut(s) 344
HspAI GCGC 3 cut(s) 227, 275, 333
KpnI GGTACC 1 cut(s) 127
LguI GCTCTTC 1 cut(s) 164
LmnI GCTCC 2 cut(s) 52, 178
Lsp1109I GCAGC 3 cut(s) 61, 168, 264
MaeI CTAG 1 cut(s) 384
MaeII ACGT 1 cut(s) 148
MaeIII GTNAC 1 cut(s) 352
MboII GAAGA 2 cut(s) 121, 181
MhlI GDGCHC 2 cut(s) 176, 312
MluCI AATT 1 cut(s) 357
MnlI CCTC 6 cut(s) 95, 201, 277, 286, 310, 396
MseI TTAA 1 cut(s) 409
MspI CCGG 5 cut(s) 36, 52, 79, 99, 127
MspR9I CCNGG 3 cut(s) 52, 79, 132
MvaI CCWGG 1 cut(s) 132
MwoI GCNNNNNNNGC 4 cut(s) 71, 272, 293, 341
NciI CCSGG 2 cut(s) 52, 79
NlaIII CATG 1 cut(s) 344
NlaIV GGNNCC 3 cut(s) 48, 90, 125
PceI AGGCCT 1 cut(s) 296
PciSI GCTCTTC 1 cut(s) 164
PcsI WCGNNNNNNNCGW 2 cut(s) 92, 154
PfeI GAWTC 1 cut(s) 390
PkrI GCNGC 6 cut(s) 41, 76, 117, 183, 279, 289
Ppu21I YACGTR 1 cut(s) 149
Psp6I CCWGG 1 cut(s) 130
PspGI CCWGG 1 cut(s) 130
PspN4I GGNNCC 3 cut(s) 48, 90, 125
PspPI GGNCC 4 cut(s) 4, 88, 142, 244
PstI CTGCAG 1 cut(s) 282
RsaI GTAC 3 cut(s) 10, 125, 164
RsaNI GTAC 3 cut(s) 9, 124, 163
SalI GTCGAC 1 cut(s) 31
SapI GCTCTTC 1 cut(s) 164
SaqAI TTAA 1 cut(s) 409
SatI GCNGC 6 cut(s) 40, 75, 116, 182, 278, 288
Sau96I GGNCC 4 cut(s) 4, 88, 142, 244
ScrFI CCNGG 3 cut(s) 52, 79, 132
SduI GDGCHC 2 cut(s) 176, 312
SetI ASST 7 cut(s) 125, 151, 183, 198, 249, 303, 381
SfcI CTRYAG 1 cut(s) 278
SinI GGWCC 1 cut(s) 244
Sse9I AATT 1 cut(s) 357
SseBI AGGCCT 1 cut(s) 296
SsiI CCGC 4 cut(s) 39, 116, 287, 290
SspMI CTAG 1 cut(s) 384
StuI AGGCCT 1 cut(s) 296
StyD4I CCNGG 3 cut(s) 50, 77, 130
TaaI ACNGT 1 cut(s) 139
TaiI ACGT 1 cut(s) 151
TaqI TCGA 1 cut(s) 32
TasI AATT 1 cut(s) 357
TauI GCSGC 3 cut(s) 42, 118, 290
TfiI GAWTC 1 cut(s) 390
Tru1I TTAA 1 cut(s) 409
Tru9I TTAA 1 cut(s) 409
TseI GCWGC 3 cut(s) 74, 181, 277
TspDTI ATGAA 1 cut(s) 329
TspGWI ACGGA 3 cut(s) 189, 191, 257
VpaK11BI GGWCC 1 cut(s) 244
XmiI GTMKAC 1 cut(s) 32
XspI CTAG 1 cut(s) 384
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.