Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4C

Orthogroup ID

OG0015796

Physical Location & Seq

Genomic Coordinates Forward (+)

9475409 .. 9479406

Gene Structure 3998 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4CG047500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 990 bp

ATGGAAACTGCGGTTCTTGATTCCATAATCTATAGGCTTCTTGAAGTGAAAGGGAAGCCAGGGAAGCTTGTGCAGCTTCAAGAGTCTGAGATTAGAGAGCTCTGTTTTGTGTCTAGAGATATTTTCTTGAGGCAGCCTAATCTTTTGGAGCTTGATGCACCCATCAAGATTTGTGGTGATATTCATGGTCAGTATTCAGATCTTCTGAGGCTTTTTGAGTTTGGTGGACCACCTTCTCACGCCAACTACTTATTCTTGGGGGACTATGTAGATCGAGGAAAGCAAAGCCTAGAAACAATATGCCTTCTCCTTGCATATAAAATTAAGTATCCTGAGAATTTTTTCCTTCTGAGGGGAAACCATGAGTGTGCTTCAATTAACCGAATATATGGGTTTTTTGATGAGTGTAAACGGAGGTTCAATGTCAGACTCTGGAAAGTATTTACAGATTGCTTCAACTGCCTTCCTGTGGCAGCTCTCATTGATGAAAAAATACTCTGTATGCATGGTGGACTGTCTCCCGAGTTAAATAATCTAAATCAAATTAAGAATTTACCAAGACCTACTGATGTTCCTGAAAGTGGCTTGCTATGTGATCTCCTCTGGTCTGATCCAAGCAAAGACATCCAAGGCTGGGGACCAAATGACAGGGGAGTTTCCTTTACCTTTGGTGCTGAGAAGGTGACAGAGTTTCTTCAGAGGCATGATCTAGACTTAGTTTGTAGAGCTCACCAGGTTGTACAAGATGGATATGAGTTTTTTGCTAATAGACAACTTGTCACCATATTTTCGGCTCCTAATTACTGTGGCGAGTTTGACAATGCTGGGGCGATGATGAGCGTGGATGAGTCTCTTATGTGTTCTTTCCAGATATTAAAGCCTGCTGATAAGAAGCTAAAGTTTGGGTTTGGGTTTGGGAGTAGAGCGGCACCTAAGCCGGGTAATCCGATGAAAGTGAAGGTATATCCATCCATTCCATCAAATGTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko03015 ko04022 ko04024 ko04113 ko04114 ko04218 ko04261 ko04270 ko04390 ko04510 ko04611 ko04720 ko04728 ko04750 ko04810 ko04910 ko04921 ko04931 ko05031 ko05034 ko05168 ko05205 map03015 map04022 map04024 map04113 map04114 map04218 map04261 map04270 map04390 map04510 map04611 map04720 map04728 map04750 map04810 map04910 map04921 map04931 map05031 map05034 map05168 map05205

Pfam Domains

Protein Families

Metallophos STPPase_N

Protein Analysis

329

Amino Acids

37.26

Weight (kDa)

6.11

Isoelectric Point (pI)

38.28

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
STPPase_N	PF16891	6 - 52	2.4e-19	Serine-threonine protein phosphatase N-terminal domain
Metallophos	PF00149	54 - 247	8.3e-51	Calcineurin-like phosphoesterase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0015796)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_4g03530
malus_domestica	MD16G1217200.v1.1
prunus_persica	Prupe.1G038500_v2.0.a1 Prupe.1G038500_v2.0.a1 Prupe.1G038500_v2.0.a1 Prupe.1G038500_v2.0.a1
pyrus_communis	pycom16g18150
rosa_chinensis	RchiOBHm_Chr4g0392801
rosa_laevigata	RLG00000009787
rosa_multiflora	Rmu_sc0000498.1_g000060
rosa_roxburghii	Rroxscaffold_5G00337900
rosa_rugosa	Rorug03G0340500 Rorug03G0340600
rosa_samantha	Rh4CG047500
rosa_wichuraiana	Rw4G003420

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	928
AccBSI	CCGCTC	1 cut(s)	926
AciI	CCGC	2 cut(s)	11, 926
AclWI	GGATC	1 cut(s)	605
AcsI	RAATTY	2 cut(s)	337, 550
AcuI	CTGAAG	1 cut(s)	680
AfaI	GTAC	1 cut(s)	741
AfiI	CCNNNNNNNGG	5 cut(s)	352, 469, 581, 634, 938
AgsI	TTSAA	5 cut(s)	44, 80, 375, 421, 457
AhdI	GACNNNNNGTC	1 cut(s)	776
AjnI	CCWGG	2 cut(s)	58, 732
AjuI	GAANNNNNNNTTGG	2 cut(s)	236, 268
AluBI	AGCT	7 cut(s)	67, 76, 100, 151, 476, 728, 895
AluI	AGCT	7 cut(s)	67, 76, 100, 151, 476, 728, 895
Alw21I	GWGCWC	2 cut(s)	102, 730
Alw26I	GTCTC	2 cut(s)	522, 855
AlwI	GGATC	1 cut(s)	605
AlwNI	CAGNNNCTG	1 cut(s)	432
Ama87I	CYCGRG	1 cut(s)	521
ApeKI	GCWGC	3 cut(s)	73, 133, 473
ApoI	RAATTY	2 cut(s)	337, 550
Asp700I	GAANNNNTTC	1 cut(s)	341
AspS9I	GGNCC	2 cut(s)	227, 638
AsuC2I	CCSGG	1 cut(s)	939
AsuHPI	GGTGA	4 cut(s)	188, 694, 722, 772
AvaI	CYCGRG	1 cut(s)	521
AvaII	GGWCC	2 cut(s)	227, 638
BanI	GGYRCC	1 cut(s)	928
BanII	GRGCYC	2 cut(s)	102, 730
Bbv12I	GWGCWC	2 cut(s)	102, 730
BbvI	GCAGC	3 cut(s)	85, 145, 485
BccI	CCATC	4 cut(s)	170, 740, 976, 985
BciT130I	CCWGG	2 cut(s)	60, 734
BciVI	GTATCC	1 cut(s)	339
BcnI	CCSGG	1 cut(s)	939
BcoDI	GTCTC	2 cut(s)	522, 855
BfaI	CTAG	3 cut(s)	114, 290, 710
BfmI	CTRYAG	1 cut(s)	31
BfuI	GTATCC	1 cut(s)	339
BglII	AGATCT	1 cut(s)	199
BisI	GCNGC	4 cut(s)	74, 134, 474, 927
BlsI	GCNGC	4 cut(s)	75, 135, 475, 928
Bme1390I	CCNGG	3 cut(s)	60, 734, 939
Bme18I	GGWCC	2 cut(s)	227, 638
BmeRI	GACNNNNNGTC	1 cut(s)	776
BmeT110I	CYCGRG	1 cut(s)	521
BmgT120I	GGNCC	2 cut(s)	227, 638
BmiI	GGNNCC	3 cut(s)	639, 795, 930
BmrFI	CCNGG	3 cut(s)	60, 734, 939
BmsI	GCATC	1 cut(s)	145
Bpu10I	CCTNAGC	1 cut(s)	933
BpuEI	CTTGAG	1 cut(s)	148
BpuMI	CCSGG	1 cut(s)	939
BsaJI	CCNNGG	2 cut(s)	59, 628
Bsc4I	CCNNNNNNNGG	5 cut(s)	352, 469, 581, 634, 938
BseBI	CCWGG	2 cut(s)	60, 734
BseDI	CCNNGG	2 cut(s)	59, 628
BseGI	GGATG	3 cut(s)	624, 850, 968
BseLI	CCNNNNNNNGG	5 cut(s)	352, 469, 581, 634, 938
BseMII	CTCAG	5 cut(s)	78, 197, 324, 341, 666
BseRI	GAGGAG	1 cut(s)	590
BseXI	GCAGC	3 cut(s)	85, 145, 485
BseYI	CCCAGC	2 cut(s)	633, 824
BsgI	GTGCAG	1 cut(s)	92
BshNI	GGYRCC	1 cut(s)	928
BsiHKAI	GWGCWC	2 cut(s)	102, 730
BsiHKCI	CYCGRG	1 cut(s)	521
BsiSI	CCGG	1 cut(s)	938
BslFI	GGGAC	2 cut(s)	275, 651
BslI	CCNNNNNNNGG	5 cut(s)	352, 469, 581, 634, 938
BsmAI	GTCTC	2 cut(s)	522, 855
BsmFI	GGGAC	2 cut(s)	275, 651
BsoBI	CYCGRG	1 cut(s)	521
Bsp1286I	GDGCHC	2 cut(s)	102, 730
Bsp1407I	TGTACA	1 cut(s)	739
Bsp143I	GATC	5 cut(s)	199, 271, 595, 610, 706
BspACI	CCGC	2 cut(s)	11, 926
BspCNI	CTCAG	5 cut(s)	79, 198, 325, 342, 667
BspLI	GGNNCC	3 cut(s)	639, 795, 930
BspPI	GGATC	1 cut(s)	605
BspT107I	GGYRCC	1 cut(s)	928
BsrBI	CCGCTC	1 cut(s)	926
BsrGI	TGTACA	1 cut(s)	739
BssECI	CCNNGG	2 cut(s)	59, 628
BssMI	GATC	5 cut(s)	199, 271, 595, 610, 706
BssT1I	CCWWGG	1 cut(s)	628
Bst2UI	CCWGG	2 cut(s)	60, 734
Bst4CI	ACNGT	2 cut(s)	516, 806
BstAUI	TGTACA	1 cut(s)	739
BstC8I	GCNNGC	2 cut(s)	587, 882
BstDEI	CTNAG	7 cut(s)	87, 206, 333, 350, 675, 715, 933
BstF5I	GGATG	3 cut(s)	624, 850, 968
BstKTI	GATC	5 cut(s)	202, 274, 598, 613, 709
BstMAI	GTCTC	2 cut(s)	522, 855
BstMBI	GATC	5 cut(s)	199, 271, 595, 610, 706
BstMWI	GCNNNNNNNGC	3 cut(s)	64, 73, 459
BstNI	CCWGG	2 cut(s)	60, 734
BstSCI	CCNGG	3 cut(s)	58, 732, 937
BstSFI	CTRYAG	1 cut(s)	31
BstV1I	GCAGC	3 cut(s)	85, 145, 485
BstX2I	RGATCY	1 cut(s)	199
BstYI	RGATCY	1 cut(s)	199
BsuI	GTATCC	1 cut(s)	339
BtgZI	GCGATG	1 cut(s)	845
BtsCI	GGATG	3 cut(s)	624, 850, 968
Cac8I	GCNNGC	2 cut(s)	587, 882
CaiI	CAGNNNCTG	1 cut(s)	432
Cfr13I	GGNCC	2 cut(s)	227, 638
CsiI	ACCWGGT	1 cut(s)	732
Csp6I	GTAC	1 cut(s)	740
CspCI	CAANNNNNGTGG	2 cut(s)	154, 189
CviAII	CATG	4 cut(s)	185, 362, 506, 704
CviQI	GTAC	1 cut(s)	740
DdeI	CTNAG	7 cut(s)	87, 206, 333, 350, 675, 715, 933
DpnI	GATC	5 cut(s)	201, 273, 597, 612, 708
DpnII	GATC	5 cut(s)	199, 271, 595, 610, 706
DriI	GACNNNNNGTC	1 cut(s)	776
Eam1105I	GACNNNNNGTC	1 cut(s)	776
Ecl136II	GAGCTC	2 cut(s)	100, 728
Eco130I	CCWWGG	1 cut(s)	628
Eco24I	GRGCYC	2 cut(s)	102, 730
Eco47I	GGWCC	2 cut(s)	227, 638
Eco53kI	GAGCTC	2 cut(s)	100, 728
Eco57I	CTGAAG	1 cut(s)	680
Eco88I	CYCGRG	1 cut(s)	521
EcoICRI	GAGCTC	2 cut(s)	100, 728
EcoRII	CCWGG	2 cut(s)	58, 732
EcoT14I	CCWWGG	1 cut(s)	628
EcoT22I	ATGCAT	1 cut(s)	507
EcoT38I	GRGCYC	2 cut(s)	102, 730
ErhI	CCWWGG	1 cut(s)	628
FaeI	CATG	4 cut(s)	188, 365, 509, 707
FaqI	GGGAC	2 cut(s)	275, 651
FatI	CATG	4 cut(s)	184, 361, 505, 703
Fnu4HI	GCNGC	4 cut(s)	74, 134, 474, 927
FokI	GGATG	3 cut(s)	611, 857, 955
FriOI	GRGCYC	2 cut(s)	102, 730
Fsp4HI	GCNGC	4 cut(s)	74, 134, 474, 927
FspBI	CTAG	3 cut(s)	114, 290, 710
GluI	GCNGC	4 cut(s)	74, 134, 474, 927
GsaI	CCCAGC	2 cut(s)	637, 828
HapII	CCGG	1 cut(s)	938
Hin1II	CATG	4 cut(s)	188, 365, 509, 707
HindIII	AAGCTT	1 cut(s)	65
HinfI	GANTC	4 cut(s)	20, 83, 429, 848
HpaII	CCGG	1 cut(s)	938
HphI	GGTGA	4 cut(s)	188, 694, 722, 772
Hpy166II	GTNNAC	3 cut(s)	227, 410, 512
Hpy188I	TCNGA	8 cut(s)	88, 199, 207, 351, 428, 610, 699, 948
Hpy8I	GTNNAC	3 cut(s)	227, 410, 512
HpyAV	CCTTC	6 cut(s)	243, 314, 356, 473, 673, 952
HpyCH4III	ACNGT	2 cut(s)	516, 806
HpyCH4V	TGCA	4 cut(s)	73, 158, 314, 505
HpyF10VI	GCNNNNNNNGC	3 cut(s)	64, 73, 459
HpyF3I	CTNAG	7 cut(s)	87, 206, 333, 350, 675, 715, 933
Hsp92II	CATG	4 cut(s)	188, 365, 509, 707
Kzo9I	GATC	5 cut(s)	199, 271, 595, 610, 706
LmnI	GCTCC	2 cut(s)	148, 799
Lsp1109I	GCAGC	3 cut(s)	85, 145, 485
LweI	GCATC	1 cut(s)	145
MabI	ACCWGGT	1 cut(s)	732
MaeI	CTAG	3 cut(s)	114, 290, 710
MaeIII	GTNAC	2 cut(s)	682, 778
MalI	GATC	5 cut(s)	201, 273, 597, 612, 708
MbiI	CCGCTC	1 cut(s)	926
MboI	GATC	5 cut(s)	199, 271, 595, 610, 706
MboII	GAAGA	2 cut(s)	194, 686
MflI	RGATCY	1 cut(s)	199
MhlI	GDGCHC	2 cut(s)	102, 730
MluCI	AATT	6 cut(s)	321, 337, 375, 543, 550, 799
MlyI	GAGTC	3 cut(s)	92, 423, 857
MnlI	CCTC	7 cut(s)	123, 201, 269, 345, 408, 611, 693
Mph1103I	ATGCAT	1 cut(s)	507
MroXI	GAANNNNTTC	1 cut(s)	341
MseI	TTAA	5 cut(s)	324, 378, 527, 546, 875
MslI	CAYNNNNRTG	1 cut(s)	366
MspI	CCGG	1 cut(s)	938
MspR9I	CCNGG	3 cut(s)	60, 734, 939
MvaI	CCWGG	2 cut(s)	60, 734
MwoI	GCNNNNNNNGC	3 cut(s)	64, 73, 459
NciI	CCSGG	1 cut(s)	939
NdeII	GATC	5 cut(s)	199, 271, 595, 610, 706
NlaIII	CATG	4 cut(s)	188, 365, 509, 707
NlaIV	GGNNCC	3 cut(s)	639, 795, 930
NmuCI	GTSAC	2 cut(s)	682, 778
NsiI	ATGCAT	1 cut(s)	507
PdmI	GAANNNNTTC	1 cut(s)	341
PfeI	GAWTC	1 cut(s)	20
PkrI	GCNGC	4 cut(s)	75, 135, 475, 928
PleI	GAGTC	3 cut(s)	91, 423, 856
PpsI	GAGTC	3 cut(s)	91, 423, 856
Psp124BI	GAGCTC	2 cut(s)	102, 730
Psp6I	CCWGG	2 cut(s)	58, 732
PspFI	CCCAGC	2 cut(s)	633, 824
PspGI	CCWGG	2 cut(s)	58, 732
PspN4I	GGNNCC	3 cut(s)	639, 795, 930
PspPI	GGNCC	2 cut(s)	227, 638
PstNI	CAGNNNCTG	1 cut(s)	432
PsuI	RGATCY	1 cut(s)	199
RsaI	GTAC	1 cut(s)	741
RsaNI	GTAC	1 cut(s)	740
RseI	CAYNNNNRTG	1 cut(s)	366
SacI	GAGCTC	2 cut(s)	102, 730
SaqAI	TTAA	5 cut(s)	324, 378, 527, 546, 875
SatI	GCNGC	4 cut(s)	74, 134, 474, 927
Sau3AI	GATC	5 cut(s)	199, 271, 595, 610, 706
Sau96I	GGNCC	2 cut(s)	227, 638
SchI	GAGTC	3 cut(s)	92, 423, 857
ScrFI	CCNGG	3 cut(s)	60, 734, 939
SduI	GDGCHC	2 cut(s)	102, 730
SexAI	ACCWGGT	1 cut(s)	732
SfaNI	GCATC	1 cut(s)	145
SfcI	CTRYAG	1 cut(s)	31
SinI	GGWCC	2 cut(s)	227, 638
SmiMI	CAYNNNNRTG	1 cut(s)	366
SmlI	CTYRAG	1 cut(s)	127
SmoI	CTYRAG	1 cut(s)	127
Sse9I	AATT	6 cut(s)	321, 337, 375, 543, 550, 799
SsiI	CCGC	2 cut(s)	11, 926
SspMI	CTAG	3 cut(s)	114, 290, 710
SstI	GAGCTC	2 cut(s)	102, 730
StyD4I	CCNGG	3 cut(s)	58, 732, 937
StyI	CCWWGG	1 cut(s)	628
TaaI	ACNGT	2 cut(s)	516, 806
TaqI	TCGA	1 cut(s)	274
TasI	AATT	6 cut(s)	321, 337, 375, 543, 550, 799
TatI	WGTACW	1 cut(s)	739
TauI	GCSGC	1 cut(s)	929
TfiI	GAWTC	1 cut(s)	20
Tru1I	TTAA	5 cut(s)	324, 378, 527, 546, 875
Tru9I	TTAA	5 cut(s)	324, 378, 527, 546, 875
TseFI	GTSAC	2 cut(s)	682, 778
TseI	GCWGC	3 cut(s)	73, 133, 473
Tsp45I	GTSAC	2 cut(s)	682, 778
TspDTI	ATGAA	3 cut(s)	173, 501, 965
TspGWI	ACGGA	1 cut(s)	427
VpaK11BI	GGWCC	2 cut(s)	227, 638
XapI	RAATTY	2 cut(s)	337, 550
XbaI	TCTAGA	2 cut(s)	113, 709
XmnI	GAANNNNTTC	1 cut(s)	341
XspI	CTAG	3 cut(s)	114, 290, 710
Zsp2I	ATGCAT	1 cut(s)	507

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.