MD17G1087400.v1.1

Leucine-rich repeat

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr17
OG0007873
Physical Location & Seq
Reverse (-)
7198384 .. 7199974
1591 bp
Loading structure...
UTR
Exon/CDS
Intron
MD17G1087400.v1.1.491

Sequence Viewer

Length: 1167 bp
ATGCCAGCTGCAGATGAGGTAATCACAGAGAAAAACCTCCAAGGAGAATCCTCAGTTCTAAGTTGGGATGAATTGCCAAACAAGGATTTTAAATATAAGCGTATCGAGGAGTGGGTTAATAATCTTCAGCATAGCAGCAGTCCGGTGGAAGAAACGGATGAATTGTCCCAATCTAATGATCAGGTGAAGAGAGAGTCCAATGACTCAAACGGTTTGACTACTGCTAAGGCAGATGGTAAGGTCACTCCTGGCATGGAAGTTGCTAAGCGATATATATCTTCTTTGAGTGCAGCTGCCACCACAGCTCAGCTTGCAAATCATGGATTGGTAGTGATCCCGTTCCTTAGTGCTTTTGTAAATCTCAGGGTGCTCAATTTATCAGGAAATTCCATAGTAAGGATAACTGCTGGTGCTCTTCCTCGAGGACTCCATATGCTGAATCTTTCAAAAAACAGTATTTCTACTATTGAAGGTTTGCGTGAACTCACAAGACTACGTGTACTGGACCTGAGCTACAACAGGATTTTGAGGATCGGACATGGCCTAGCTTCTTGTTCATCTCTAAAGGAATTGTACCTGGCTGGAAACAAGATCAGTGAGGTGGAGGGTCTTCATCGCCTCCTAAAACTGACTGTTCTGGATCTGCGCTTCAACAAAATCTCAACGGCAAAATGTCTTGGTCAACTTGCGGCGAACTACAACTCCTTGCAAGCCATCAGTCTGGAAGGAAACCCAGCTCAGAAGAATGTCGGCGATGACCAATTGAAGAAATACCTGCAAGGACTTCTTCCCCACATGGCTTACTACAACCGGCAGCAAATCAAGTCCAGCTCTCTGAAGGATTCTGCAGATCGGTCAGTTCGCTTAGGTATTAGTAACCACCAGTTTGATCGAACCCTTAGACCCGATCACAAGGCTCCGAGGAAGGCTAGTCATGGTGTATCTTCCAAAAAGCCATCGACTTCATCAACTCACGCTCATGCAAGTGCATCTGTAGCAACATTGAAAAAGTCTCGGGGTAGACACAGCCACCTCCCTCCGAGCGGAACAAAAGCAACAGCGCATAGTCGGCAGCACTACCTTGATTTGGGAAGCAGAATTATGAACCTCAAGCAGGATCTCTCGATGCGCAGGAGTCGGAGTGAGGGAACAATGGCAGCTATGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
LRR_4 LRR_6 LRR_8

Protein Analysis

389

Amino Acids

42.64

Weight (kDa)

9.86

Isoelectric Point (pI)

46.61

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
LRR_8 PF13855 120 - 175 1.6e-10 Leucine rich repeat
LRR_9 PF14580 120 - 222 2.4e-09 Leucine-rich repeat
LRR_4 PF12799 143 - 176 1.2e-06 Leucine Rich repeats (2 copies)
LRR_8 PF13855 164 - 220 2e-09 Leucine rich repeat
LRR_4 PF12799 187 - 222 6.5e-07 Leucine Rich repeats (2 copies)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AbsI CCTCGAGG 1 cut(s) 420
Acc16I TGCGCA 1 cut(s) 1130
Acc36I ACCTGC 1 cut(s) 783
AccBSI CCGCTC 1 cut(s) 1044
AccI GTMKAC 1 cut(s) 1021
AciI CCGC 2 cut(s) 689, 1044
AclWI GGATC 4 cut(s) 328, 539, 648, 1125
AcsI RAATTY 1 cut(s) 385
AcuI CTGAAG 2 cut(s) 110, 857
AfaI GTAC 2 cut(s) 501, 575
AfiI CCNNNNNNNGG 4 cut(s) 396, 1043, 1087, 1114
AflIII ACRYGT 1 cut(s) 496
AgsI TTSAA 5 cut(s) 447, 470, 652, 766, 1006
AjnI CCWGG 2 cut(s) 247, 576
AloI GAACNNNNNNTCC 2 cut(s) 686, 718
AluBI AGCT 9 cut(s) 8, 293, 305, 310, 513, 548, 737, 831, 1160
AluI AGCT 9 cut(s) 8, 293, 305, 310, 513, 548, 737, 831, 1160
Alw21I GWGCWC 2 cut(s) 372, 415
Alw26I GTCTC 1 cut(s) 1017
AlwI GGATC 4 cut(s) 328, 539, 648, 1125
Ama87I CYCGRG 2 cut(s) 420, 1014
AoxI GGCC 1 cut(s) 541
ApeKI GCWGC 7 cut(s) 8, 135, 290, 293, 814, 1072, 1157
ApoI RAATTY 1 cut(s) 385
AspLEI GCGC 3 cut(s) 648, 1063, 1131
AspS9I GGNCC 1 cut(s) 505
AsuHPI GGTGA 1 cut(s) 196
AvaI CYCGRG 2 cut(s) 420, 1014
AvaII GGWCC 1 cut(s) 505
BbsI GAAGAC 1 cut(s) 602
Bbv12I GWGCWC 2 cut(s) 372, 415
BbvI GCAGC 5 cut(s) 147, 280, 302, 826, 1084
BccI CCATC 3 cut(s) 227, 722, 964
BceAI ACGGC 1 cut(s) 681
BciT130I CCWGG 2 cut(s) 249, 578
BclI TGATCA 1 cut(s) 178
BcoDI GTCTC 1 cut(s) 1017
BfaI CTAG 2 cut(s) 545, 930
BfmI CTRYAG 3 cut(s) 9, 846, 993
BfuAI ACCTGC 1 cut(s) 783
BisI GCNGC 8 cut(s) 9, 136, 291, 294, 690, 815, 1073, 1158
BlpI GCTNAGC 2 cut(s) 264, 306
BlsI GCNGC 8 cut(s) 10, 137, 292, 295, 691, 816, 1074, 1159
Bme1390I CCNGG 2 cut(s) 249, 578
Bme18I GGWCC 1 cut(s) 505
BmeT110I CYCGRG 2 cut(s) 420, 1014
BmgT120I GGNCC 1 cut(s) 505
BmiI GGNNCC 1 cut(s) 918
BmrFI CCNGG 2 cut(s) 249, 578
BmsI GCATC 2 cut(s) 998, 1116
BpiI GAAGAC 1 cut(s) 602
Bpu10I CCTNAGC 3 cut(s) 225, 509, 865
Bpu1102I GCTNAGC 2 cut(s) 264, 306
BpuEI CTTGAG 1 cut(s) 1094
BsaAI YACGTR 1 cut(s) 497
BsaBI GATNNNNATC 1 cut(s) 274
BsaJI CCNNGG 2 cut(s) 40, 920
BsaWI WCCGGW 1 cut(s) 142
BsaXI ACNNNNNCTCC 4 cut(s) 686, 716, 1126, 1156
Bsc4I CCNNNNNNNGG 4 cut(s) 396, 1043, 1087, 1114
Bse118I RCCGGY 1 cut(s) 810
Bse1I ACTGG 2 cut(s) 507, 883
Bse8I GATNNNNATC 1 cut(s) 274
BseBI CCWGG 2 cut(s) 249, 578
BseDI CCNNGG 2 cut(s) 40, 920
BseGI GGATG 2 cut(s) 73, 163
BseJI GATNNNNATC 1 cut(s) 274
BseLI CCNNNNNNNGG 4 cut(s) 396, 1043, 1087, 1114
BseMII CTCAG 5 cut(s) 66, 320, 376, 500, 752
BseNI ACTGG 2 cut(s) 507, 883
BseRI GAGGAG 1 cut(s) 122
BseXI GCAGC 5 cut(s) 147, 280, 302, 826, 1084
BseYI CCCAGC 1 cut(s) 733
BsgI GTGCAG 1 cut(s) 309
BshFI GGCC 1 cut(s) 543
BsiHKAI GWGCWC 2 cut(s) 372, 415
BsiHKCI CYCGRG 2 cut(s) 420, 1014
BsiSI CCGG 2 cut(s) 143, 811
BslFI GGGAC 1 cut(s) 151
BslI CCNNNNNNNGG 4 cut(s) 396, 1043, 1087, 1114
BsmAI GTCTC 1 cut(s) 1017
BsmFI GGGAC 1 cut(s) 151
BsnI GGCC 1 cut(s) 543
BsoBI CYCGRG 2 cut(s) 420, 1014
Bsp1286I GDGCHC 2 cut(s) 372, 415
Bsp143I GATC 9 cut(s) 178, 333, 531, 591, 640, 850, 889, 907, 1117
Bsp1720I GCTNAGC 2 cut(s) 264, 306
BspACI CCGC 2 cut(s) 689, 1044
BspANI GGCC 1 cut(s) 543
BspCNI CTCAG 5 cut(s) 65, 319, 375, 501, 751
BspLI GGNNCC 1 cut(s) 918
BspMAI CTGCAG 2 cut(s) 13, 850
BspMI ACCTGC 1 cut(s) 783
BspPI GGATC 4 cut(s) 328, 539, 648, 1125
BspQI GCTCTTC 1 cut(s) 420
BsrBI CCGCTC 1 cut(s) 1044
BsrFI RCCGGY 1 cut(s) 810
BsrI ACTGG 2 cut(s) 507, 883
BssAI RCCGGY 1 cut(s) 810
BssECI CCNNGG 2 cut(s) 40, 920
BssMI GATC 9 cut(s) 178, 333, 531, 591, 640, 850, 889, 907, 1117
BssT1I CCWWGG 1 cut(s) 40
Bst2UI CCWGG 2 cut(s) 249, 578
Bst4CI ACNGT 3 cut(s) 212, 455, 634
Bst6I CTCTTC 2 cut(s) 182, 420
BstBAI YACGTR 1 cut(s) 497
BstC8I GCNNGC 3 cut(s) 6, 312, 711
BstENI CCTNNNNNAGG 1 cut(s) 1112
BstF5I GGATG 2 cut(s) 73, 163
BstHHI GCGC 3 cut(s) 648, 1063, 1131
BstKTI GATC 9 cut(s) 181, 336, 534, 594, 643, 853, 892, 910, 1120
BstMAI GTCTC 1 cut(s) 1017
BstMBI GATC 9 cut(s) 178, 333, 531, 591, 640, 850, 889, 907, 1117
BstMWI GCNNNNNNNGC 4 cut(s) 302, 311, 995, 1069
BstNI CCWGG 2 cut(s) 249, 578
BstSCI CCNGG 2 cut(s) 247, 576
BstSFI CTRYAG 3 cut(s) 9, 846, 993
BstV1I GCAGC 5 cut(s) 147, 280, 302, 826, 1084
BstV2I GAAGAC 1 cut(s) 602
BstX2I RGATCY 2 cut(s) 640, 1117
BstXI CCANNNNNNTGG 1 cut(s) 721
BstYI RGATCY 2 cut(s) 640, 1117
BsuRI GGCC 1 cut(s) 543
BtgZI GCGATG 2 cut(s) 599, 768
BtsCI GGATG 2 cut(s) 73, 163
BtsIMutI CAGTG 1 cut(s) 601
BveI ACCTGC 1 cut(s) 783
Cac8I GCNNGC 3 cut(s) 6, 312, 711
CfoI GCGC 3 cut(s) 648, 1063, 1131
Cfr10I RCCGGY 1 cut(s) 810
Cfr13I GGNCC 1 cut(s) 505
Csp6I GTAC 2 cut(s) 500, 574
CviAII CATG 6 cut(s) 253, 320, 539, 796, 935, 980
CviQI GTAC 2 cut(s) 500, 574
DpnI GATC 9 cut(s) 180, 335, 533, 593, 642, 852, 891, 909, 1119
DpnII GATC 9 cut(s) 178, 333, 531, 591, 640, 850, 889, 907, 1117
DraI TTTAAA 1 cut(s) 91
Eam1104I CTCTTC 2 cut(s) 182, 420
EarI CTCTTC 2 cut(s) 182, 420
Eco130I CCWWGG 1 cut(s) 40
Eco47I GGWCC 1 cut(s) 505
Eco57I CTGAAG 2 cut(s) 110, 857
Eco88I CYCGRG 2 cut(s) 420, 1014
EcoNI CCTNNNNNAGG 1 cut(s) 1112
EcoRII CCWGG 2 cut(s) 247, 576
EcoT14I CCWWGG 1 cut(s) 40
ErhI CCWWGG 1 cut(s) 40
FaeI CATG 6 cut(s) 256, 323, 542, 799, 938, 983
FalI AAGNNNNNCTT 2 cut(s) 771, 803
FaqI GGGAC 1 cut(s) 151
FatI CATG 6 cut(s) 252, 319, 538, 795, 934, 979
FauNDI CATATG 1 cut(s) 432
FbaI TGATCA 1 cut(s) 178
FblI GTMKAC 1 cut(s) 1021
Fnu4HI GCNGC 8 cut(s) 9, 136, 291, 294, 690, 815, 1073, 1158
FokI GGATG 2 cut(s) 80, 170
Fsp4HI GCNGC 8 cut(s) 9, 136, 291, 294, 690, 815, 1073, 1158
FspBI CTAG 2 cut(s) 545, 930
FspI TGCGCA 1 cut(s) 1130
GlaI GCGC 3 cut(s) 647, 1062, 1130
GluI GCNGC 8 cut(s) 9, 136, 291, 294, 690, 815, 1073, 1158
GsaI CCCAGC 1 cut(s) 737
HaeIII GGCC 1 cut(s) 543
HapII CCGG 2 cut(s) 143, 811
HhaI GCGC 3 cut(s) 648, 1063, 1131
Hin1II CATG 6 cut(s) 256, 323, 542, 799, 938, 983
Hin6I GCGC 3 cut(s) 646, 1061, 1129
HinP1I GCGC 3 cut(s) 646, 1061, 1129
HincII GTYRAC 1 cut(s) 683
HindII GTYRAC 1 cut(s) 683
HinfI GANTC 7 cut(s) 47, 194, 203, 426, 439, 842, 1135
HpaII CCGG 2 cut(s) 143, 811
HphI GGTGA 1 cut(s) 196
Hpy166II GTNNAC 4 cut(s) 482, 500, 683, 1022
Hpy188I TCNGA 6 cut(s) 536, 741, 837, 921, 1041, 1140
Hpy188III TCNNGA 4 cut(s) 381, 638, 722, 1123
Hpy8I GTNNAC 4 cut(s) 482, 500, 683, 1022
HpyAV CCTTC 4 cut(s) 464, 719, 832, 919
HpyCH4III ACNGT 3 cut(s) 212, 455, 634
HpyCH4IV ACGT 1 cut(s) 496
HpyCH4V TGCA 8 cut(s) 11, 290, 314, 709, 778, 848, 983, 989
HpyF10VI GCNNNNNNNGC 4 cut(s) 302, 311, 995, 1069
HpySE526I ACGT 1 cut(s) 496
Hsp92II CATG 6 cut(s) 256, 323, 542, 799, 938, 983
HspAI GCGC 3 cut(s) 646, 1061, 1129
Ksp22I TGATCA 1 cut(s) 178
Kzo9I GATC 9 cut(s) 178, 333, 531, 591, 640, 850, 889, 907, 1117
LguI GCTCTTC 1 cut(s) 420
LmnI GCTCC 1 cut(s) 922
Lsp1109I GCAGC 5 cut(s) 147, 280, 302, 826, 1084
LweI GCATC 2 cut(s) 998, 1116
MaeI CTAG 2 cut(s) 545, 930
MaeII ACGT 1 cut(s) 496
MaeIII GTNAC 2 cut(s) 241, 875
MalI GATC 9 cut(s) 180, 335, 533, 593, 642, 852, 891, 909, 1119
MbiI CCGCTC 1 cut(s) 1044
MboI GATC 9 cut(s) 178, 333, 531, 591, 640, 850, 889, 907, 1117
MfeI CAATTG 1 cut(s) 761
MflI RGATCY 2 cut(s) 640, 1117
MhlI GDGCHC 2 cut(s) 372, 415
MluCI AATT 7 cut(s) 71, 161, 373, 385, 569, 761, 1098
MlyI GAGTC 4 cut(s) 197, 203, 420, 1144
MmeI TCCRAC 1 cut(s) 1118
MseI TTAA 2 cut(s) 90, 117
MslI CAYNNNNRTG 2 cut(s) 978, 984
MspA1I CMGCKG 2 cut(s) 8, 293
MspI CCGG 2 cut(s) 143, 811
MspR9I CCNGG 2 cut(s) 249, 578
MunI CAATTG 1 cut(s) 761
MvaI CCWGG 2 cut(s) 249, 578
MwoI GCNNNNNNNGC 4 cut(s) 302, 311, 995, 1069
NdeI CATATG 1 cut(s) 432
NdeII GATC 9 cut(s) 178, 333, 531, 591, 640, 850, 889, 907, 1117
NlaIII CATG 6 cut(s) 256, 323, 542, 799, 938, 983
NlaIV GGNNCC 1 cut(s) 918
NmuCI GTSAC 1 cut(s) 241
NsbI TGCGCA 1 cut(s) 1130
PaeR7I CTCGAG 1 cut(s) 420
PciSI GCTCTTC 1 cut(s) 420
PfeI GAWTC 3 cut(s) 47, 439, 842
PkrI GCNGC 8 cut(s) 10, 137, 292, 295, 691, 816, 1074, 1159
PleI GAGTC 4 cut(s) 197, 202, 420, 1143
PpsI GAGTC 4 cut(s) 197, 202, 420, 1143
Ppu21I YACGTR 1 cut(s) 497
Psp6I CCWGG 2 cut(s) 247, 576
PspFI CCCAGC 1 cut(s) 733
PspGI CCWGG 2 cut(s) 247, 576
PspN4I GGNNCC 1 cut(s) 918
PspPI GGNCC 1 cut(s) 505
PspXI VCTCGAGB 1 cut(s) 420
PstI CTGCAG 2 cut(s) 13, 850
PsuI RGATCY 2 cut(s) 640, 1117
PvuII CAGCTG 2 cut(s) 8, 293
RsaI GTAC 2 cut(s) 501, 575
RsaNI GTAC 2 cut(s) 500, 574
RseI CAYNNNNRTG 2 cut(s) 978, 984
SapI GCTCTTC 1 cut(s) 420
SaqAI TTAA 2 cut(s) 90, 117
SatI GCNGC 8 cut(s) 9, 136, 291, 294, 690, 815, 1073, 1158
Sau3AI GATC 9 cut(s) 178, 333, 531, 591, 640, 850, 889, 907, 1117
Sau96I GGNCC 1 cut(s) 505
SchI GAGTC 4 cut(s) 197, 203, 420, 1144
ScrFI CCNGG 2 cut(s) 249, 578
SduI GDGCHC 2 cut(s) 372, 415
SfaNI GCATC 2 cut(s) 998, 1116
SfcI CTRYAG 3 cut(s) 9, 846, 993
Sfr274I CTCGAG 1 cut(s) 420
SinI GGWCC 1 cut(s) 505
SlaI CTCGAG 1 cut(s) 420
SmiMI CAYNNNNRTG 2 cut(s) 978, 984
SmlI CTYRAG 2 cut(s) 420, 1109
SmoI CTYRAG 2 cut(s) 420, 1109
Sse9I AATT 7 cut(s) 71, 161, 373, 385, 569, 761, 1098
SsiI CCGC 2 cut(s) 689, 1044
SspMI CTAG 2 cut(s) 545, 930
StyD4I CCNGG 2 cut(s) 247, 576
StyI CCWWGG 1 cut(s) 40
TaaI ACNGT 3 cut(s) 212, 455, 634
TaiI ACGT 1 cut(s) 499
TaqI TCGA 5 cut(s) 105, 421, 892, 959, 1124
TaqII GACCGA 1 cut(s) 843
TasI AATT 7 cut(s) 71, 161, 373, 385, 569, 761, 1098
TatI WGTACW 1 cut(s) 499
TauI GCSGC 1 cut(s) 692
TfiI GAWTC 3 cut(s) 47, 439, 842
Tru1I TTAA 2 cut(s) 90, 117
Tru9I TTAA 2 cut(s) 90, 117
TscAI CASTG 1 cut(s) 601
TseFI GTSAC 1 cut(s) 241
TseI GCWGC 7 cut(s) 8, 135, 290, 293, 814, 1072, 1157
Tsp45I GTSAC 1 cut(s) 241
TspDTI ATGAA 6 cut(s) 84, 174, 546, 602, 954, 1118
TspGWI ACGGA 1 cut(s) 170
TspRI CASTG 1 cut(s) 601
VpaK11BI GGWCC 1 cut(s) 505
XagI CCTNNNNNAGG 1 cut(s) 1112
XapI RAATTY 1 cut(s) 385
XhoI CTCGAG 1 cut(s) 420
XmiI GTMKAC 1 cut(s) 1021
XspI CTAG 2 cut(s) 545, 930
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.