Rorug02G0486600

Leucine-rich repeat

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000002
OG0007873
Physical Location & Seq
Forward (+)
61626353 .. 61629893
3541 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug02G0486600.1

Sequence Viewer

Length: 1164 bp
ATGCCGCCACCAGCCACACTCTCATCTTCTTCCTCCTTCACCCTCCTCTCCCCATCTCCCTCCCCATCTCCAAAGCTTGCATCTTTCCACTCCAAACACCACTCCTTCCACTCCGCCACGCGCTTCACGCGCCTCCGCCTCGCCCGCTCACTCACTCCGCGATGCGCCGTCATCGAGAAAGAGACGCCGGAGACGGAAAAGCCCGATACTTTCCTCCGCGAGTCGTCGTCGCCGACCTCAGTCCGGGCGCGGTTCGAGAAGATGATAAGGGAGGCGCAGGACACAGTGTGTGAGGCCATCGCCGCCGCGGACGGCGGAGGCAAGTTTAAGGAGGACGTGTGGTCGAGGCCGGGCGGCGGTGGGGGTATCAGTAGAGTCCTCCAAAACGGCGCCGTTTGGGAGAAGGCTGGGGTTAATGTGTCTGTTGTGTATGGAGTTATGCCTCCTGAGGCTTATAGAGCTGCCAAGGGCGCCGCCACTGATCACAAGCCCGGCCCGGTTCCGTTCTTCGCCGCCGGAATTAGCTCGGTTTTGCATCCAAAGAACCCTTTTGCTCCTACTTTGCATTTCAATTATCGGTATTTCGAAACAGATGCTCCCCAAGATGCTCCTGGAGCACCTAGGCAATGGTGGTTTGGAGGTGGAACTGACTTGACGCCTGCTTATATTTTTGAGGAGGATGTTAAACATTTTCATTCAGTTCAGAAAAGTGCTTGCGACAAATTTGATCCTACCTTCTATCCTCGGTTCAAGAAATGGTGTGATGATTATTTCTATATCAAGCATCGTGATGAGAGACGAGGGCTTGGGGGAATATTTTTTGATGATCTAAATGACTATGATCAGGAGATGCTTCTTTCTTTTGCCACTGAATGTGCAAACTCTGTGGTCCCTGCTTATGTACCAATTATAGAGAAAAGGAAGGATACACCATTTACAGAGGACCATAAGGCATGGCAGCAATTGCGAAGAGGGAGATATGTTGAATTCAATTTGGTTTATGATCGTGGAACAACTTTTGGACTAAAGACAGGAGGTCGAATTGAGAGTATTCTTGTCTCTCTTCCACTGACTGCTCGGTGGGAATACGACCATAAACCAGAAGAGGGAAGCGAAGAATGGAAACTATTAGATGCGTGCATCAACCCAAAGGAATGGGTTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
LRR_4 LRR_6 LRR_8

Protein Analysis

387

Amino Acids

43.56

Weight (kDa)

6.87

Isoelectric Point (pI)

61.07

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Coprogen_oxidas PF01218 85 - 386 6.1e-137 Coproporphyrinogen III oxidase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 2 cut(s) 389, 470
AccBSI CCGCTC 1 cut(s) 147
AccII CGCG 6 cut(s) 121, 130, 160, 219, 250, 308
AclWI GGATC 1 cut(s) 722
AcsI RAATTY 2 cut(s) 722, 986
AcyI GRCGYC 4 cut(s) 185, 390, 471, 656
AdeI CACNNNGTG 1 cut(s) 288
AfaI GTAC 1 cut(s) 903
AfiI CCNNNNNNNGG 3 cut(s) 243, 356, 1106
AflIII ACRYGT 1 cut(s) 336
AgsI TTSAA 4 cut(s) 571, 751, 986, 991
AhdI GACNNNNNGTC 2 cut(s) 340, 1035
AjiI CACGTC 1 cut(s) 337
AjnI CCWGG 1 cut(s) 610
AluBI AGCT 3 cut(s) 76, 461, 525
AluI AGCT 3 cut(s) 76, 461, 525
Alw21I GWGCWC 1 cut(s) 619
Alw26I GTCTC 4 cut(s) 176, 185, 790, 1063
AlwI GGATC 1 cut(s) 722
AoxI GGCC 3 cut(s) 294, 347, 493
ApeKI GCWGC 2 cut(s) 461, 958
ApoI RAATTY 2 cut(s) 722, 986
AspA2I CCTAGG 1 cut(s) 620
AspLEI GCGC 7 cut(s) 123, 132, 167, 250, 277, 392, 473
AspS9I GGNCC 3 cut(s) 494, 889, 943
AsuC2I CCSGG 4 cut(s) 245, 351, 492, 497
AsuHPI GGTGA 1 cut(s) 31
AsuII TTCGAA 1 cut(s) 585
AvaII GGWCC 2 cut(s) 889, 943
AvrII CCTAGG 1 cut(s) 620
AxyI CCTNAGG 1 cut(s) 447
BanI GGYRCC 2 cut(s) 389, 470
Bbv12I GWGCWC 1 cut(s) 619
BbvI GCAGC 2 cut(s) 448, 970
BccI CCATC 3 cut(s) 61, 73, 305
BceAI ACGGC 4 cut(s) 152, 328, 377, 403
BcgI CGANNNNNNTGC 2 cut(s) 575, 609
BciT130I CCWGG 1 cut(s) 612
BciVI GTATCC 1 cut(s) 919
BclI TGATCA 2 cut(s) 481, 841
BcnI CCSGG 4 cut(s) 245, 351, 492, 497
BcoDI GTCTC 4 cut(s) 176, 185, 790, 1063
BfaI CTAG 1 cut(s) 621
BfoI RGCGCY 2 cut(s) 393, 474
BfuI GTATCC 1 cut(s) 919
BisI GCNGC 8 cut(s) 5, 303, 306, 355, 462, 474, 513, 959
BlnI CCTAGG 1 cut(s) 620
BlsI GCNGC 8 cut(s) 6, 304, 307, 356, 463, 475, 514, 960
Bme1390I CCNGG 5 cut(s) 245, 351, 492, 497, 612
Bme18I GGWCC 2 cut(s) 889, 943
BmeRI GACNNNNNGTC 2 cut(s) 340, 1035
BmgBI CACGTC 1 cut(s) 337
BmgT120I GGNCC 3 cut(s) 494, 889, 943
BmiI GGNNCC 4 cut(s) 391, 472, 501, 891
BmrFI CCNGG 5 cut(s) 245, 351, 492, 497, 612
BmsI GCATC 9 cut(s) 89, 152, 544, 583, 595, 793, 840, 1123, 1149
BoxI GACNNNNGTC 1 cut(s) 239
BpmI CTGGAG 1 cut(s) 633
Bpu14I TTCGAA 1 cut(s) 585
BpuMI CCSGG 4 cut(s) 245, 351, 492, 497
BsaHI GRCGYC 4 cut(s) 185, 390, 471, 656
BsaJI CCNNGG 4 cut(s) 306, 465, 620, 743
BsaXI ACNNNNNCTCC 4 cut(s) 323, 353, 580, 610
Bsc4I CCNNNNNNNGG 3 cut(s) 243, 356, 1106
Bse21I CCTNAGG 1 cut(s) 447
Bse3DI GCAATG 1 cut(s) 632
BseBI CCWGG 1 cut(s) 612
BseDI CCNNGG 4 cut(s) 306, 465, 620, 743
BseGI GGATG 2 cut(s) 535, 685
BseLI CCNNNNNNNGG 3 cut(s) 243, 356, 1106
BseMI GCAATG 1 cut(s) 632
BseMII CTCAG 2 cut(s) 252, 438
BseRI GAGGAG 2 cut(s) 35, 689
BseXI GCAGC 2 cut(s) 448, 970
BseYI CCCAGC 1 cut(s) 407
Bsh1236I CGCG 6 cut(s) 121, 130, 160, 219, 250, 308
BshFI GGCC 3 cut(s) 296, 349, 495
BshNI GGYRCC 2 cut(s) 389, 470
BsiHKAI GWGCWC 1 cut(s) 619
BsiSI CCGG 6 cut(s) 188, 244, 350, 492, 497, 516
BslFI GGGAC 1 cut(s) 875
BslI CCNNNNNNNGG 3 cut(s) 243, 356, 1106
BsmAI GTCTC 4 cut(s) 176, 185, 790, 1063
BsmBI CGTCTC 3 cut(s) 176, 185, 790
BsmFI GGGAC 1 cut(s) 875
BsnI GGCC 3 cut(s) 296, 349, 495
Bsp119I TTCGAA 1 cut(s) 585
Bsp1286I GDGCHC 1 cut(s) 619
Bsp143I GATC 5 cut(s) 481, 727, 826, 841, 1003
BspANI GGCC 3 cut(s) 296, 349, 495
BspCNI CTCAG 2 cut(s) 251, 439
BspFNI CGCG 6 cut(s) 121, 130, 160, 219, 250, 308
BspLI GGNNCC 4 cut(s) 391, 472, 501, 891
BspPI GGATC 1 cut(s) 722
BspT104I TTCGAA 1 cut(s) 585
BspT107I GGYRCC 2 cut(s) 389, 470
BsrBI CCGCTC 1 cut(s) 147
BsrDI GCAATG 1 cut(s) 632
BssECI CCNNGG 4 cut(s) 306, 465, 620, 743
BssMI GATC 5 cut(s) 481, 727, 826, 841, 1003
BssNI GRCGYC 4 cut(s) 185, 390, 471, 656
BssT1I CCWWGG 2 cut(s) 465, 620
Bst2UI CCWGG 1 cut(s) 612
Bst4CI ACNGT 1 cut(s) 286
Bst6I CTCTTC 3 cut(s) 964, 1068, 1098
BstACI GRCGYC 4 cut(s) 185, 390, 471, 656
BstAPI GCANNNNNTGC 1 cut(s) 964
BstBI TTCGAA 1 cut(s) 585
BstC8I GCNNGC 5 cut(s) 78, 145, 660, 715, 1138
BstDEI CTNAG 2 cut(s) 238, 447
BstDSI CCRYGG 1 cut(s) 306
BstF5I GGATG 2 cut(s) 535, 685
BstFNI CGCG 6 cut(s) 121, 130, 160, 219, 250, 308
BstH2I RGCGCY 2 cut(s) 393, 474
BstHHI GCGC 7 cut(s) 123, 132, 167, 250, 277, 392, 473
BstKTI GATC 5 cut(s) 484, 730, 829, 844, 1006
BstMAI GTCTC 4 cut(s) 176, 185, 790, 1063
BstMBI GATC 5 cut(s) 481, 727, 826, 841, 1003
BstMWI GCNNNNNNNGC 8 cut(s) 127, 129, 144, 302, 458, 470, 614, 964
BstNI CCWGG 1 cut(s) 612
BstPAI GACNNNNGTC 1 cut(s) 239
BstSCI CCNGG 5 cut(s) 243, 349, 490, 495, 610
BstUI CGCG 6 cut(s) 121, 130, 160, 219, 250, 308
BstV1I GCAGC 2 cut(s) 448, 970
BstXI CCANNNNNNTGG 1 cut(s) 1155
Bsu36I CCTNAGG 1 cut(s) 447
BsuI GTATCC 1 cut(s) 919
BsuRI GGCC 3 cut(s) 296, 349, 495
BtgI CCRYGG 1 cut(s) 306
BtgZI GCGATG 2 cut(s) 175, 283
BtrI CACGTC 1 cut(s) 337
BtsCI GGATG 2 cut(s) 535, 685
BtsIMutI CAGTG 4 cut(s) 291, 477, 867, 1067
Cac8I GCNNGC 5 cut(s) 78, 145, 660, 715, 1138
CfoI GCGC 7 cut(s) 123, 132, 167, 250, 277, 392, 473
Cfr13I GGNCC 3 cut(s) 494, 889, 943
Cfr42I CCGCGG 1 cut(s) 309
CseI GACGC 2 cut(s) 193, 664
Csp6I GTAC 1 cut(s) 902
CspCI CAANNNNNGTGG 2 cut(s) 867, 902
CviAII CATG 1 cut(s) 954
CviQI GTAC 1 cut(s) 902
DdeI CTNAG 2 cut(s) 238, 447
DinI GGCGCC 2 cut(s) 391, 472
DpnI GATC 5 cut(s) 483, 729, 828, 843, 1005
DpnII GATC 5 cut(s) 481, 727, 826, 841, 1003
DraIII CACNNNGTG 1 cut(s) 288
DriI GACNNNNNGTC 2 cut(s) 340, 1035
Eam1104I CTCTTC 3 cut(s) 964, 1068, 1098
Eam1105I GACNNNNNGTC 2 cut(s) 340, 1035
EarI CTCTTC 3 cut(s) 964, 1068, 1098
EciI GGCGGA 3 cut(s) 103, 125, 330
Eco130I CCWWGG 2 cut(s) 465, 620
Eco47I GGWCC 2 cut(s) 889, 943
Eco81I CCTNAGG 1 cut(s) 447
EcoRI GAATTC 1 cut(s) 986
EcoRII CCWGG 1 cut(s) 610
EcoT14I CCWWGG 2 cut(s) 465, 620
EgeI GGCGCC 2 cut(s) 391, 472
EheI GGCGCC 2 cut(s) 391, 472
ErhI CCWWGG 2 cut(s) 465, 620
Esp3I CGTCTC 3 cut(s) 176, 185, 790
FaeI CATG 1 cut(s) 957
FaqI GGGAC 1 cut(s) 875
FatI CATG 1 cut(s) 953
FauI CCCGC 1 cut(s) 152
FbaI TGATCA 2 cut(s) 481, 841
Fnu4HI GCNGC 8 cut(s) 5, 303, 306, 355, 462, 474, 513, 959
FokI GGATG 2 cut(s) 522, 692
Fsp4HI GCNGC 8 cut(s) 5, 303, 306, 355, 462, 474, 513, 959
FspBI CTAG 1 cut(s) 621
GlaI GCGC 7 cut(s) 122, 131, 166, 249, 276, 391, 472
GluI GCNGC 8 cut(s) 5, 303, 306, 355, 462, 474, 513, 959
GsaI CCCAGC 1 cut(s) 411
GsuI CTGGAG 1 cut(s) 633
HaeII RGCGCY 2 cut(s) 393, 474
HaeIII GGCC 3 cut(s) 296, 349, 495
HapII CCGG 6 cut(s) 188, 244, 350, 492, 497, 516
HgaI GACGC 2 cut(s) 193, 664
HhaI GCGC 7 cut(s) 123, 132, 167, 250, 277, 392, 473
Hin1I GRCGYC 4 cut(s) 185, 390, 471, 656
Hin1II CATG 1 cut(s) 957
Hin6I GCGC 7 cut(s) 121, 130, 165, 248, 275, 390, 471
HinP1I GCGC 7 cut(s) 121, 130, 165, 248, 275, 390, 471
HindIII AAGCTT 1 cut(s) 74
HinfI GANTC 2 cut(s) 221, 375
HpaII CCGG 6 cut(s) 188, 244, 350, 492, 497, 516
HphI GGTGA 1 cut(s) 31
Hpy188I TCNGA 1 cut(s) 705
Hpy188III TCNNGA 6 cut(s) 175, 256, 446, 751, 788, 845
Hpy99I CGWCG 2 cut(s) 229, 232
HpyAV CCTTC 5 cut(s) 46, 115, 397, 745, 916
HpyCH4III ACNGT 1 cut(s) 286
HpyCH4IV ACGT 1 cut(s) 336
HpyCH4V TGCA 5 cut(s) 80, 535, 565, 878, 1140
HpyF10VI GCNNNNNNNGC 8 cut(s) 127, 129, 144, 302, 458, 470, 614, 964
HpyF3I CTNAG 2 cut(s) 238, 447
HpySE526I ACGT 1 cut(s) 336
Hsp92I GRCGYC 4 cut(s) 185, 390, 471, 656
Hsp92II CATG 1 cut(s) 957
HspAI GCGC 7 cut(s) 121, 130, 165, 248, 275, 390, 471
KasI GGCGCC 2 cut(s) 389, 470
Ksp22I TGATCA 2 cut(s) 481, 841
KspI CCGCGG 1 cut(s) 309
Kzo9I GATC 5 cut(s) 481, 727, 826, 841, 1003
LmnI GCTCC 4 cut(s) 559, 601, 613, 614
Lsp1109I GCAGC 2 cut(s) 448, 970
LweI GCATC 9 cut(s) 89, 152, 544, 583, 595, 793, 840, 1123, 1149
MaeI CTAG 1 cut(s) 621
MaeII ACGT 1 cut(s) 336
MalI GATC 5 cut(s) 483, 729, 828, 843, 1005
MbiI CCGCTC 1 cut(s) 147
MboI GATC 5 cut(s) 481, 727, 826, 841, 1003
MboII GAAGA 8 cut(s) 18, 21, 271, 499, 981, 1055, 1115, 1127
MfeI CAATTG 1 cut(s) 962
MhlI GDGCHC 1 cut(s) 619
MluCI AATT 8 cut(s) 519, 571, 722, 906, 962, 986, 991, 1041
Mly113I GGCGCC 2 cut(s) 390, 471
MlyI GAGTC 2 cut(s) 230, 384
MseI TTAA 4 cut(s) 327, 414, 684, 1162
MslI CAYNNNNRTG 1 cut(s) 789
MspA1I CMGCKG 1 cut(s) 308
MspI CCGG 6 cut(s) 188, 244, 350, 492, 497, 516
MspR9I CCNGG 5 cut(s) 245, 351, 492, 497, 612
MunI CAATTG 1 cut(s) 962
MvaI CCWGG 1 cut(s) 612
MvnI CGCG 6 cut(s) 121, 130, 160, 219, 250, 308
MwoI GCNNNNNNNGC 8 cut(s) 127, 129, 144, 302, 458, 470, 614, 964
NarI GGCGCC 2 cut(s) 390, 471
NciI CCSGG 4 cut(s) 245, 351, 492, 497
NdeII GATC 5 cut(s) 481, 727, 826, 841, 1003
NlaIII CATG 1 cut(s) 957
NlaIV GGNNCC 4 cut(s) 391, 472, 501, 891
NspV TTCGAA 1 cut(s) 585
PcsI WCGNNNNNNNCGW 1 cut(s) 230
PfoI TCCNGGA 1 cut(s) 610
PkrI GCNGC 8 cut(s) 6, 304, 307, 356, 463, 475, 514, 960
PleI GAGTC 2 cut(s) 229, 383
PluTI GGCGCC 2 cut(s) 393, 474
PpsI GAGTC 2 cut(s) 229, 383
PshAI GACNNNNGTC 1 cut(s) 239
Psp6I CCWGG 1 cut(s) 610
PspFI CCCAGC 1 cut(s) 407
PspGI CCWGG 1 cut(s) 610
PspN4I GGNNCC 4 cut(s) 391, 472, 501, 891
PspPI GGNCC 3 cut(s) 494, 889, 943
RsaI GTAC 1 cut(s) 903
RsaNI GTAC 1 cut(s) 902
RseI CAYNNNNRTG 1 cut(s) 789
SacII CCGCGG 1 cut(s) 309
SaqAI TTAA 4 cut(s) 327, 414, 684, 1162
SatI GCNGC 8 cut(s) 5, 303, 306, 355, 462, 474, 513, 959
Sau3AI GATC 5 cut(s) 481, 727, 826, 841, 1003
Sau96I GGNCC 3 cut(s) 494, 889, 943
SchI GAGTC 2 cut(s) 230, 384
ScrFI CCNGG 5 cut(s) 245, 351, 492, 497, 612
SduI GDGCHC 1 cut(s) 619
SetI ASST 9 cut(s) 78, 239, 339, 463, 527, 622, 643, 737, 1039
SfaNI GCATC 9 cut(s) 89, 152, 544, 583, 595, 793, 840, 1123, 1149
SfoI GGCGCC 2 cut(s) 391, 472
Sfr303I CCGCGG 1 cut(s) 309
SfuI TTCGAA 1 cut(s) 585
SgrBI CCGCGG 1 cut(s) 309
SinI GGWCC 2 cut(s) 889, 943
SmiMI CAYNNNNRTG 1 cut(s) 789
Sse9I AATT 8 cut(s) 519, 571, 722, 906, 962, 986, 991, 1041
SspDI GGCGCC 2 cut(s) 389, 470
SspI AATATT 1 cut(s) 816
SspMI CTAG 1 cut(s) 621
StyD4I CCNGG 5 cut(s) 243, 349, 490, 495, 610
StyI CCWWGG 2 cut(s) 465, 620
TaaI ACNGT 1 cut(s) 286
TaiI ACGT 1 cut(s) 339
TaqI TCGA 5 cut(s) 174, 255, 344, 585, 1039
TasI AATT 8 cut(s) 519, 571, 722, 906, 962, 986, 991, 1041
TauI GCSGC 6 cut(s) 7, 305, 308, 357, 476, 515
Tru1I TTAA 4 cut(s) 327, 414, 684, 1162
Tru9I TTAA 4 cut(s) 327, 414, 684, 1162
TscAI CASTG 4 cut(s) 291, 484, 874, 1074
TseI GCWGC 2 cut(s) 461, 958
TspDTI ATGAA 1 cut(s) 683
TspGWI ACGGA 2 cut(s) 209, 492
TspRI CASTG 4 cut(s) 291, 484, 874, 1074
VpaK11BI GGWCC 2 cut(s) 889, 943
XapI RAATTY 2 cut(s) 722, 986
XcmI CCANNNNNNNNNTGG 1 cut(s) 608
XmaJI CCTAGG 1 cut(s) 620
XspI CTAG 1 cut(s) 621
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.