MD17G1155700.v1.1

Lipase (class 3)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr17
OG0017699
Physical Location & Seq
Forward (+)
14832694 .. 14833163
470 bp
Loading structure...
UTR
Exon/CDS
Intron
MD17G1155700.v1.1.491

Sequence Viewer

Length: 150 bp
ATGTCAGTGCTGGTGTTGCATGAGGAGATGAAGGTGATGCAAAGGTTGTTGGGTGTGTACACATTTGGACAGCCTAGGGTAGGGGACAGGAAGCTGGCAAGGTACATGGACGATCGGTTCCAAAGTACTCAGGGTTGTCTACTGCAATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Lipase_3

Protein Analysis

50

Amino Acids

5.75

Weight (kDa)

9.1

Isoelectric Point (pI)

42.68

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Lipase_3 PF01764 6 - 42 2.5e-06 Lipase (class 3)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0017699)

Species Orthologous Gene IDs
fragaria_vesca FvH4_6g36220
malus_domestica MD17G1155700.v1.1
rosa_chinensis RchiOBHm_Chr2g0148191
rosa_laevigata RLG00000020325
rosa_multiflora Rmu_co8278977.1_g000001 Rmu_sc0001516.1_g000104
rosa_roxburghii Rroxscaffold_2G00099010
rosa_rugosa Rorug02G0404300.1
rosa_samantha Rh2BG476100 Rh2DG484800 Rh6BG483600 Rh6DG474800

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 139
AfaI GTAC 3 cut(s) 59, 104, 127
AfiI CCNNNNNNNGG 1 cut(s) 80
AloI GAACNNNNNNTCC 2 cut(s) 101, 133
AluBI AGCT 1 cut(s) 94
AluI AGCT 1 cut(s) 94
AspA2I CCTAGG 1 cut(s) 74
AsuHPI GGTGA 1 cut(s) 46
AvrII CCTAGG 1 cut(s) 74
BfaI CTAG 1 cut(s) 75
BlnI CCTAGG 1 cut(s) 74
BmcAI AGTACT 1 cut(s) 127
BmiI GGNNCC 1 cut(s) 119
BmsI GCATC 1 cut(s) 27
BsaJI CCNNGG 1 cut(s) 74
Bsc4I CCNNNNNNNGG 1 cut(s) 80
BseDI CCNNGG 1 cut(s) 74
BseLI CCNNNNNNNGG 1 cut(s) 80
BseMII CTCAG 1 cut(s) 143
BseRI GAGGAG 1 cut(s) 38
Bsh1285I CGRYCG 1 cut(s) 115
BsiEI CGRYCG 1 cut(s) 115
BslFI GGGAC 1 cut(s) 98
BslI CCNNNNNNNGG 1 cut(s) 80
BsmFI GGGAC 1 cut(s) 98
Bsp1407I TGTACA 1 cut(s) 57
Bsp143I GATC 1 cut(s) 112
BspCNI CTCAG 1 cut(s) 142
BspLI GGNNCC 1 cut(s) 119
BsrGI TGTACA 1 cut(s) 57
BssECI CCNNGG 1 cut(s) 74
BssMI GATC 1 cut(s) 112
BssT1I CCWWGG 1 cut(s) 74
BstAUI TGTACA 1 cut(s) 57
BstC8I GCNNGC 1 cut(s) 96
BstDEI CTNAG 1 cut(s) 129
BstENI CCTNNNNNAGG 1 cut(s) 78
BstKTI GATC 1 cut(s) 115
BstMBI GATC 1 cut(s) 112
BstMCI CGRYCG 1 cut(s) 115
BstMWI GCNNNNNNNGC 1 cut(s) 16
BtsIMutI CAGTG 1 cut(s) 12
Cac8I GCNNGC 1 cut(s) 96
Csp6I GTAC 3 cut(s) 58, 103, 126
CviAII CATG 2 cut(s) 20, 106
CviJI RGCY 2 cut(s) 73, 94
CviKI_1 RGCY 2 cut(s) 73, 94
CviQI GTAC 3 cut(s) 58, 103, 126
DdeI CTNAG 1 cut(s) 129
DpnI GATC 1 cut(s) 114
DpnII GATC 1 cut(s) 112
Eco130I CCWWGG 1 cut(s) 74
EcoNI CCTNNNNNAGG 1 cut(s) 78
EcoT14I CCWWGG 1 cut(s) 74
ErhI CCWWGG 1 cut(s) 74
FaeI CATG 2 cut(s) 23, 109
FaiI YATR 2 cut(s) 21, 107
FaqI GGGAC 1 cut(s) 98
FatI CATG 2 cut(s) 19, 105
FblI GTMKAC 1 cut(s) 139
FspBI CTAG 1 cut(s) 75
Hin1II CATG 2 cut(s) 23, 109
HphI GGTGA 1 cut(s) 46
Hpy166II GTNNAC 3 cut(s) 58, 60, 140
Hpy8I GTNNAC 3 cut(s) 58, 60, 140
HpyAV CCTTC 1 cut(s) 25
HpyCH4V TGCA 3 cut(s) 19, 40, 145
HpyF10VI GCNNNNNNNGC 1 cut(s) 16
HpyF3I CTNAG 1 cut(s) 129
Hsp92II CATG 2 cut(s) 23, 109
Kzo9I GATC 1 cut(s) 112
LpnPI CCDG 3 cut(s) 73, 80, 116
LweI GCATC 1 cut(s) 27
MaeI CTAG 1 cut(s) 75
MalI GATC 1 cut(s) 114
MboI GATC 1 cut(s) 112
MnlI CCTC 1 cut(s) 16
MwoI GCNNNNNNNGC 1 cut(s) 16
NdeII GATC 1 cut(s) 112
NlaIII CATG 2 cut(s) 23, 109
NlaIV GGNNCC 1 cut(s) 119
Ple19I CGATCG 1 cut(s) 115
PspN4I GGNNCC 1 cut(s) 119
PvuI CGATCG 1 cut(s) 115
RsaI GTAC 3 cut(s) 59, 104, 127
RsaNI GTAC 3 cut(s) 58, 103, 126
Sau3AI GATC 1 cut(s) 112
ScaI AGTACT 1 cut(s) 127
SetI ASST 4 cut(s) 36, 47, 96, 104
SfaNI GCATC 1 cut(s) 27
SgeI CNNG 8 cut(s) 23, 32, 87, 100, 107, 111, 118, 143
SspMI CTAG 1 cut(s) 75
StyI CCWWGG 1 cut(s) 74
TatI WGTACW 2 cut(s) 57, 125
TscAI CASTG 1 cut(s) 12
TspDTI ATGAA 1 cut(s) 44
TspRI CASTG 1 cut(s) 12
XagI CCTNNNNNAGG 1 cut(s) 78
XmaJI CCTAGG 1 cut(s) 74
XmiI GTMKAC 1 cut(s) 139
XspI CTAG 1 cut(s) 75
ZrmI AGTACT 1 cut(s) 127
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.