Rmu_co8278977.1_g000001

Lipase (class 3)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_co8278977.1
OG0017699
Physical Location & Seq
Reverse (-)
1 .. 833
833 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_co8278977.1_g000001.1.cds

Sequence Viewer

Length: 378 bp
atggtagagaagagtgcatactatgctgtaagaaaaaagctcaagagcttactagaggagcacaaaaacgcaaaattcgttgttacagggcatagtctaggtggggcacttgcgatattgttcccttgtgtgctggtgttgcatgaggagatggagttgatggataggttgttgggtatatatacatttggacagccaaggatagggaataggcagctggggaggtacatggaagtccatctgaataagccggtccaaaagtacttcagggttgtctactccaacgatcttgtccccaggttgccttatgatgacagaaccttcttgtttaaacatttcggtgtctgcctttactacgacagcctatacaatgaacat
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Lipase_3

Protein Analysis

126

Amino Acids

14.8

Weight (kDa)

9.06

Isoelectric Point (pI)

32.64

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0017699)

Species Orthologous Gene IDs
fragaria_vesca FvH4_6g36220
malus_domestica MD17G1155700.v1.1
rosa_chinensis RchiOBHm_Chr2g0148191
rosa_laevigata RLG00000020325
rosa_multiflora Rmu_co8278977.1_g000001 Rmu_sc0001516.1_g000104
rosa_roxburghii Rroxscaffold_2G00099010
rosa_rugosa Rorug02G0404300.1
rosa_samantha Rh2BG476100 Rh2DG484800 Rh6BG483600 Rh6DG474800

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 276
AcsI RAATTY 1 cut(s) 74
AcuI CTGAAG 1 cut(s) 250
AfaI GTAC 2 cut(s) 227, 263
AfiI CCNNNNNNNGG 1 cut(s) 203
AjnI CCWGG 1 cut(s) 296
AluBI AGCT 3 cut(s) 40, 48, 217
AluI AGCT 3 cut(s) 40, 48, 217
Alw21I GWGCWC 1 cut(s) 63
ApeKI GCWGC 1 cut(s) 214
ApoI RAATTY 1 cut(s) 74
AspS9I GGNCC 1 cut(s) 253
AvaII GGWCC 1 cut(s) 253
BaeGI GKGCMC 1 cut(s) 109
BarI GAAGNNNNNNTAC 1 cut(s) 34
Bbv12I GWGCWC 1 cut(s) 63
BbvI GCAGC 1 cut(s) 226
BccI CCATC 3 cut(s) 145, 154, 246
BciT130I CCWGG 1 cut(s) 298
BfaI CTAG 2 cut(s) 53, 98
BisI GCNGC 1 cut(s) 215
BlsI GCNGC 1 cut(s) 216
BmcAI AGTACT 1 cut(s) 263
Bme1390I CCNGG 1 cut(s) 298
Bme18I GGWCC 1 cut(s) 253
BmgT120I GGNCC 1 cut(s) 253
BmrFI CCNGG 1 cut(s) 298
BpuEI CTTGAG 1 cut(s) 26
BsaJI CCNNGG 2 cut(s) 197, 296
BsaXI ACNNNNNCTCC 2 cut(s) 140, 170
Bsc4I CCNNNNNNNGG 1 cut(s) 203
Bse118I RCCGGY 1 cut(s) 250
BseBI CCWGG 1 cut(s) 298
BseDI CCNNGG 2 cut(s) 197, 296
BseLI CCNNNNNNNGG 1 cut(s) 203
BseRI GAGGAG 2 cut(s) 71, 161
BseSI GKGCMC 1 cut(s) 109
BseXI GCAGC 1 cut(s) 226
BseYI CCCAGC 1 cut(s) 217
BsiHKAI GWGCWC 1 cut(s) 63
BsiSI CCGG 1 cut(s) 251
BslFI GGGAC 1 cut(s) 278
BslI CCNNNNNNNGG 1 cut(s) 203
BsmFI GGGAC 1 cut(s) 278
Bsp1286I GDGCHC 2 cut(s) 63, 109
Bsp143I GATC 1 cut(s) 286
BsrFI RCCGGY 1 cut(s) 250
BssAI RCCGGY 1 cut(s) 250
BssECI CCNNGG 2 cut(s) 197, 296
BssMI GATC 1 cut(s) 286
BssT1I CCWWGG 1 cut(s) 197
Bst2UI CCWGG 1 cut(s) 298
Bst6I CTCTTC 1 cut(s) 5
BstAPI GCANNNNNTGC 1 cut(s) 23
BstKTI GATC 1 cut(s) 289
BstMBI GATC 1 cut(s) 286
BstMWI GCNNNNNNNGC 2 cut(s) 23, 139
BstNI CCWGG 1 cut(s) 298
BstSCI CCNGG 1 cut(s) 296
BstSLI GKGCMC 1 cut(s) 109
BstV1I GCAGC 1 cut(s) 226
Cfr10I RCCGGY 1 cut(s) 250
Cfr13I GGNCC 1 cut(s) 253
Csp6I GTAC 2 cut(s) 226, 262
CviAII CATG 2 cut(s) 143, 229
CviJI RGCY 6 cut(s) 40, 48, 196, 217, 250, 363
CviKI_1 RGCY 6 cut(s) 40, 48, 196, 217, 250, 363
CviQI GTAC 2 cut(s) 226, 262
DpnI GATC 1 cut(s) 288
DpnII GATC 1 cut(s) 286
DraI TTTAAA 1 cut(s) 331
Eam1104I CTCTTC 1 cut(s) 5
EarI CTCTTC 1 cut(s) 5
Eco130I CCWWGG 1 cut(s) 197
Eco47I GGWCC 1 cut(s) 253
Eco57I CTGAAG 1 cut(s) 250
EcoRII CCWGG 1 cut(s) 296
EcoT14I CCWWGG 1 cut(s) 197
ErhI CCWWGG 1 cut(s) 197
FaeI CATG 2 cut(s) 146, 232
FaqI GGGAC 1 cut(s) 278
FatI CATG 2 cut(s) 142, 228
FblI GTMKAC 1 cut(s) 276
Fnu4HI GCNGC 1 cut(s) 215
Fsp4HI GCNGC 1 cut(s) 215
FspBI CTAG 2 cut(s) 53, 98
GluI GCNGC 1 cut(s) 215
GsaI CCCAGC 1 cut(s) 221
HapII CCGG 1 cut(s) 251
Hin1II CATG 2 cut(s) 146, 232
HpaII CCGG 1 cut(s) 251
Hpy166II GTNNAC 1 cut(s) 277
Hpy188I TCNGA 1 cut(s) 243
Hpy188III TCNNGA 1 cut(s) 43
Hpy8I GTNNAC 1 cut(s) 277
HpyAV CCTTC 1 cut(s) 331
HpyCH4V TGCA 2 cut(s) 17, 142
HpyF10VI GCNNNNNNNGC 2 cut(s) 23, 139
Hsp92II CATG 2 cut(s) 146, 232
Kzo9I GATC 1 cut(s) 286
LmnI GCTCC 1 cut(s) 58
LpnPI CCDG 7 cut(s) 72, 119, 203, 253, 264, 283, 310
Lsp1109I GCAGC 1 cut(s) 226
MaeI CTAG 2 cut(s) 53, 98
MaeIII GTNAC 1 cut(s) 82
MalI GATC 1 cut(s) 288
MboI GATC 1 cut(s) 286
MboII GAAGA 1 cut(s) 22
MhlI GDGCHC 2 cut(s) 63, 109
MluCI AATT 1 cut(s) 74
MmeI TCCRAC 1 cut(s) 306
MnlI CCTC 3 cut(s) 49, 139, 216
MseI TTAA 1 cut(s) 330
MslI CAYNNNNRTG 1 cut(s) 339
MspA1I CMGCKG 1 cut(s) 217
MspI CCGG 1 cut(s) 251
MspR9I CCNGG 1 cut(s) 298
MssI GTTTAAAC 1 cut(s) 331
MvaI CCWGG 1 cut(s) 298
MwoI GCNNNNNNNGC 2 cut(s) 23, 139
NdeII GATC 1 cut(s) 286
NlaIII CATG 2 cut(s) 146, 232
PcsI WCGNNNNNNNCGW 1 cut(s) 75
PkrI GCNGC 1 cut(s) 216
PmeI GTTTAAAC 1 cut(s) 331
Psp6I CCWGG 1 cut(s) 296
PspFI CCCAGC 1 cut(s) 217
PspGI CCWGG 1 cut(s) 296
PspPI GGNCC 1 cut(s) 253
PvuII CAGCTG 1 cut(s) 217
RsaI GTAC 2 cut(s) 227, 263
RsaNI GTAC 2 cut(s) 226, 262
RseI CAYNNNNRTG 1 cut(s) 339
SaqAI TTAA 1 cut(s) 330
SatI GCNGC 1 cut(s) 215
Sau3AI GATC 1 cut(s) 286
Sau96I GGNCC 1 cut(s) 253
ScaI AGTACT 1 cut(s) 263
ScrFI CCNGG 1 cut(s) 298
SduI GDGCHC 2 cut(s) 63, 109
SetI ASST 8 cut(s) 42, 50, 103, 170, 219, 227, 302, 323
SinI GGWCC 1 cut(s) 253
SmiMI CAYNNNNRTG 1 cut(s) 339
SmlI CTYRAG 1 cut(s) 41
SmoI CTYRAG 1 cut(s) 41
Sse9I AATT 1 cut(s) 74
SspMI CTAG 2 cut(s) 53, 98
StyD4I CCNGG 1 cut(s) 296
StyI CCWWGG 1 cut(s) 197
TasI AATT 1 cut(s) 74
TatI WGTACW 1 cut(s) 261
Tru1I TTAA 1 cut(s) 330
Tru9I TTAA 1 cut(s) 330
TseI GCWGC 1 cut(s) 214
VpaK11BI GGWCC 1 cut(s) 253
XapI RAATTY 1 cut(s) 74
XmiI GTMKAC 1 cut(s) 276
XspI CTAG 2 cut(s) 53, 98
ZrmI AGTACT 1 cut(s) 263
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.