Rh6DG474800

triglyceride lipase activity

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6D
OG0017699
Physical Location & Seq
Reverse (-)
64046732 .. 64047546
815 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6DG474800.1

Sequence Viewer

Length: 609 bp
ATGCTGAAAGATTTACTGCAAGAGGATGAGAATGCCAAGTTTATATTGACGGGGCACAGCTTGGGCGGGGCGTTGGCGATTTTGTTTGCCGGGGTGCTAGCAATGCATGACTGTGAGTATGCCTGGTTGCTGGAGAGGTTGGAGGGGGTTTACACGTTCGGACAGCCTAGGGTTGGAGATGGGAAGTTTGGGGTGTTTATGAAGGAAAAGTTTAGGAAATATGATGTGAGATACATGAGGTATGTTTACAGCAATGACCTGGTGCCTAGAATACCTTATGATGATAAAGCCCTCATGTTCAAGCACTTCGGGTCAAGTCTTTACTACAACAGCTGCTATAGAGGAAAGGAGGCTGAATGCAGTGTGGGAGTTGTTAAGGAGCTTCATACTCCCTTTGGTAAGGGGTTCAGACTACAAAGAGGGGTGGTTTATGAGATTTTGGAGGCTGGTGGGATTAGTAATTCCAGGATTGGCAACCCAATGCTCCTCAAGATTACGTCAATCTTACAAGATTGGGAACCCTGCTTATTCCTAAAGAAAGTCCTAAAGTCGAGTAACATGCAAGACTTGGAACAGAATAGCATGGCATACTGCATTTTCAAAACTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005576 GO:0005615 GO:0044421
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Lipase_3

Protein Analysis

202

Amino Acids

23.13

Weight (kDa)

8.5

Isoelectric Point (pI)

31.41

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Lipase_3 PF01764 2 - 94 2.6e-23 Lipase (class 3)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0017699)

Species Orthologous Gene IDs
fragaria_vesca FvH4_6g36220
malus_domestica MD17G1155700.v1.1
rosa_chinensis RchiOBHm_Chr2g0148191
rosa_laevigata RLG00000020325
rosa_multiflora Rmu_co8278977.1_g000001 Rmu_sc0001516.1_g000104
rosa_roxburghii Rroxscaffold_2G00099010
rosa_rugosa Rorug02G0404300.1
rosa_samantha Rh2BG476100 Rh2DG484800 Rh6BG483600 Rh6DG474800

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 262
AciI CCGC 1 cut(s) 66
AfiI CCNNNNNNNGG 1 cut(s) 173
AflIII ACRYGT 1 cut(s) 153
AgsI TTSAA 2 cut(s) 301, 601
AjnI CCWGG 3 cut(s) 122, 258, 464
AluBI AGCT 3 cut(s) 60, 333, 382
AluI AGCT 3 cut(s) 60, 333, 382
ApeKI GCWGC 1 cut(s) 333
AspA2I CCTAGG 1 cut(s) 167
AsuC2I CCSGG 1 cut(s) 91
AsuNHI GCTAGC 1 cut(s) 97
AvrII CCTAGG 1 cut(s) 167
BaeGI GKGCMC 1 cut(s) 57
BanI GGYRCC 1 cut(s) 262
BbvI GCAGC 1 cut(s) 320
BccI CCATC 1 cut(s) 173
BcgI CGANNNNNNTGC 2 cut(s) 541, 575
BciT130I CCWGG 3 cut(s) 124, 260, 466
BcnI CCSGG 1 cut(s) 91
BfaI CTAG 3 cut(s) 98, 168, 267
BfmI CTRYAG 1 cut(s) 337
BisI GCNGC 1 cut(s) 334
BlnI CCTAGG 1 cut(s) 167
BlsI GCNGC 1 cut(s) 335
Bme1390I CCNGG 4 cut(s) 91, 124, 260, 466
BmiI GGNNCC 2 cut(s) 264, 519
BmrFI CCNGG 4 cut(s) 91, 124, 260, 466
BmtI GCTAGC 1 cut(s) 101
BpmI CTGGAG 1 cut(s) 152
BpuEI CTTGAG 1 cut(s) 473
BpuMI CCSGG 1 cut(s) 91
BsaJI CCNNGG 2 cut(s) 90, 167
Bsc4I CCNNNNNNNGG 1 cut(s) 173
Bse3DI GCAATG 2 cut(s) 108, 259
BseBI CCWGG 3 cut(s) 124, 260, 466
BseDI CCNNGG 2 cut(s) 90, 167
BseGI GGATG 1 cut(s) 31
BseLI CCNNNNNNNGG 1 cut(s) 173
BseMI GCAATG 2 cut(s) 108, 259
BseRI GAGGAG 1 cut(s) 476
BseSI GKGCMC 1 cut(s) 57
BseXI GCAGC 1 cut(s) 320
BshNI GGYRCC 1 cut(s) 262
BsiSI CCGG 1 cut(s) 90
BslI CCNNNNNNNGG 1 cut(s) 173
BsmI GAATGC 2 cut(s) 37, 362
Bsp1286I GDGCHC 1 cut(s) 57
BspACI CCGC 1 cut(s) 66
BspLI GGNNCC 2 cut(s) 264, 519
BspOI GCTAGC 1 cut(s) 101
BspT107I GGYRCC 1 cut(s) 262
BsrDI GCAATG 2 cut(s) 108, 259
BssECI CCNNGG 2 cut(s) 90, 167
BssT1I CCWWGG 1 cut(s) 167
Bst2UI CCWGG 3 cut(s) 124, 260, 466
Bst4CI ACNGT 1 cut(s) 113
BstC8I GCNNGC 1 cut(s) 99
BstF5I GGATG 1 cut(s) 31
BstMWI GCNNNNNNNGC 1 cut(s) 103
BstNI CCWGG 3 cut(s) 124, 260, 466
BstNSI RCATGY 1 cut(s) 562
BstSCI CCNGG 4 cut(s) 89, 122, 258, 464
BstSFI CTRYAG 1 cut(s) 337
BstSLI GKGCMC 1 cut(s) 57
BstV1I GCAGC 1 cut(s) 320
BtsCI GGATG 1 cut(s) 31
BtsI GCAGTG 1 cut(s) 367
BtsIMutI CAGTG 1 cut(s) 367
Cac8I GCNNGC 1 cut(s) 99
CsiI ACCWGGT 1 cut(s) 258
CviAII CATG 5 cut(s) 107, 235, 295, 559, 583
CviJI RGCY 7 cut(s) 60, 166, 290, 333, 353, 382, 446
CviKI_1 RGCY 7 cut(s) 60, 166, 290, 333, 353, 382, 446
Eco130I CCWWGG 1 cut(s) 167
EcoRII CCWGG 3 cut(s) 122, 258, 464
EcoT14I CCWWGG 1 cut(s) 167
EcoT22I ATGCAT 1 cut(s) 108
ErhI CCWWGG 1 cut(s) 167
FaeI CATG 5 cut(s) 110, 238, 298, 562, 586
FatI CATG 5 cut(s) 106, 234, 294, 558, 582
FauI CCCGC 1 cut(s) 59
Fnu4HI GCNGC 1 cut(s) 334
FokI GGATG 1 cut(s) 38
Fsp4HI GCNGC 1 cut(s) 334
FspBI CTAG 3 cut(s) 98, 168, 267
GluI GCNGC 1 cut(s) 334
GsuI CTGGAG 1 cut(s) 152
HapII CCGG 1 cut(s) 90
Hin1II CATG 5 cut(s) 110, 238, 298, 562, 586
HpaII CCGG 1 cut(s) 90
Hpy166II GTNNAC 2 cut(s) 151, 247
Hpy188I TCNGA 2 cut(s) 161, 410
Hpy188III TCNNGA 1 cut(s) 490
Hpy8I GTNNAC 2 cut(s) 151, 247
HpyAV CCTTC 1 cut(s) 196
HpyCH4III ACNGT 1 cut(s) 113
HpyCH4IV ACGT 2 cut(s) 155, 497
HpyCH4V TGCA 5 cut(s) 19, 106, 360, 562, 594
HpyF10VI GCNNNNNNNGC 1 cut(s) 103
HpySE526I ACGT 2 cut(s) 155, 497
Hsp92II CATG 5 cut(s) 110, 238, 298, 562, 586
LmnI GCTCC 2 cut(s) 379, 489
Lsp1109I GCAGC 1 cut(s) 320
MabI ACCWGGT 1 cut(s) 258
MaeI CTAG 3 cut(s) 98, 168, 267
MaeII ACGT 2 cut(s) 155, 497
MaeIII GTNAC 1 cut(s) 554
MhlI GDGCHC 1 cut(s) 57
MluCI AATT 1 cut(s) 460
MmeI TCCRAC 2 cut(s) 120, 154
Mph1103I ATGCAT 1 cut(s) 108
MseI TTAA 2 cut(s) 375, 607
MslI CAYNNNNRTG 1 cut(s) 111
MspA1I CMGCKG 1 cut(s) 333
MspI CCGG 1 cut(s) 90
MspR9I CCNGG 4 cut(s) 91, 124, 260, 466
Mva1269I GAATGC 2 cut(s) 37, 362
MvaI CCWGG 3 cut(s) 124, 260, 466
MwoI GCNNNNNNNGC 1 cut(s) 103
NciI CCSGG 1 cut(s) 91
NheI GCTAGC 1 cut(s) 97
NlaIII CATG 5 cut(s) 110, 238, 298, 562, 586
NlaIV GGNNCC 2 cut(s) 264, 519
NsiI ATGCAT 1 cut(s) 108
NspI RCATGY 1 cut(s) 562
PctI GAATGC 2 cut(s) 37, 362
PfoI TCCNGGA 1 cut(s) 464
PkrI GCNGC 1 cut(s) 335
Psp6I CCWGG 3 cut(s) 122, 258, 464
PspGI CCWGG 3 cut(s) 122, 258, 464
PspN4I GGNNCC 2 cut(s) 264, 519
PvuII CAGCTG 1 cut(s) 333
RseI CAYNNNNRTG 1 cut(s) 111
SaqAI TTAA 2 cut(s) 375, 607
SatI GCNGC 1 cut(s) 334
ScrFI CCNGG 4 cut(s) 91, 124, 260, 466
SduI GDGCHC 1 cut(s) 57
SetI ASST 9 cut(s) 62, 140, 158, 242, 261, 277, 335, 384, 500
SexAI ACCWGGT 1 cut(s) 258
SfcI CTRYAG 1 cut(s) 337
SmiMI CAYNNNNRTG 1 cut(s) 111
SmlI CTYRAG 1 cut(s) 488
SmoI CTYRAG 1 cut(s) 488
Sse9I AATT 1 cut(s) 460
SsiI CCGC 1 cut(s) 66
SspMI CTAG 3 cut(s) 98, 168, 267
StyD4I CCNGG 4 cut(s) 89, 122, 258, 464
StyI CCWWGG 1 cut(s) 167
TaaI ACNGT 1 cut(s) 113
TaiI ACGT 2 cut(s) 158, 500
TaqI TCGA 1 cut(s) 551
TasI AATT 1 cut(s) 460
Tru1I TTAA 2 cut(s) 375, 607
Tru9I TTAA 2 cut(s) 375, 607
TscAI CASTG 1 cut(s) 367
TseI GCWGC 1 cut(s) 333
TspDTI ATGAA 2 cut(s) 215, 374
TspRI CASTG 1 cut(s) 367
XceI RCATGY 1 cut(s) 562
XmaJI CCTAGG 1 cut(s) 167
XspI CTAG 3 cut(s) 98, 168, 267
Zsp2I ATGCAT 1 cut(s) 108
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.