Rh6BG483600

triglyceride lipase activity

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6B
OG0017699
Physical Location & Seq
Reverse (-)
68843603 .. 68843824
222 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6BG483600.1

Sequence Viewer

Length: 222 bp
ATGCTGAAAGATTTACTGCAAGAGGATGAGAATGCCAAGTTTATATTGACGGGGCACAGCTTGGGCGGGGCGTTGGCGATTTTGTTTGCCAGGGTGCTAGCAATGCATGACTGTGAGTATGCCTGGTTGCTGGAGAGGTTGGAGGGGGTTTACACGTTCGGACAGCCTAGGGTTGGAGATGGGAAGTTTGGGGTGTTTATGAAGGAAAAGTTTAGGAAATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005576 GO:0005615 GO:0044421
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Lipase_3

Protein Analysis

73

Amino Acids

8.32

Weight (kDa)

6.72

Isoelectric Point (pI)

34.64

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Lipase_3 PF01764 2 - 73 2.5e-18 Lipase (class 3)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0017699)

Species Orthologous Gene IDs
fragaria_vesca FvH4_6g36220
malus_domestica MD17G1155700.v1.1
rosa_chinensis RchiOBHm_Chr2g0148191
rosa_laevigata RLG00000020325
rosa_multiflora Rmu_co8278977.1_g000001 Rmu_sc0001516.1_g000104
rosa_roxburghii Rroxscaffold_2G00099010
rosa_rugosa Rorug02G0404300.1
rosa_samantha Rh2BG476100 Rh2DG484800 Rh6BG483600 Rh6DG474800

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 66
AfiI CCNNNNNNNGG 1 cut(s) 173
AflIII ACRYGT 1 cut(s) 153
AjnI CCWGG 2 cut(s) 89, 122
AluBI AGCT 1 cut(s) 60
AluI AGCT 1 cut(s) 60
AspA2I CCTAGG 1 cut(s) 167
AsuNHI GCTAGC 1 cut(s) 97
AvrII CCTAGG 1 cut(s) 167
BaeGI GKGCMC 1 cut(s) 57
BccI CCATC 1 cut(s) 173
BciT130I CCWGG 2 cut(s) 91, 124
BfaI CTAG 2 cut(s) 98, 168
BlnI CCTAGG 1 cut(s) 167
Bme1390I CCNGG 2 cut(s) 91, 124
BmrFI CCNGG 2 cut(s) 91, 124
BmtI GCTAGC 1 cut(s) 101
BpmI CTGGAG 1 cut(s) 152
BsaJI CCNNGG 2 cut(s) 90, 167
Bsc4I CCNNNNNNNGG 1 cut(s) 173
Bse3DI GCAATG 1 cut(s) 108
BseBI CCWGG 2 cut(s) 91, 124
BseDI CCNNGG 2 cut(s) 90, 167
BseGI GGATG 1 cut(s) 31
BseLI CCNNNNNNNGG 1 cut(s) 173
BseMI GCAATG 1 cut(s) 108
BseSI GKGCMC 1 cut(s) 57
BslI CCNNNNNNNGG 1 cut(s) 173
BsmI GAATGC 1 cut(s) 37
Bsp1286I GDGCHC 1 cut(s) 57
BspACI CCGC 1 cut(s) 66
BspOI GCTAGC 1 cut(s) 101
BsrDI GCAATG 1 cut(s) 108
BssECI CCNNGG 2 cut(s) 90, 167
BssT1I CCWWGG 1 cut(s) 167
Bst2UI CCWGG 2 cut(s) 91, 124
Bst4CI ACNGT 1 cut(s) 113
BstC8I GCNNGC 1 cut(s) 99
BstF5I GGATG 1 cut(s) 31
BstMWI GCNNNNNNNGC 1 cut(s) 103
BstNI CCWGG 2 cut(s) 91, 124
BstSCI CCNGG 2 cut(s) 89, 122
BstSLI GKGCMC 1 cut(s) 57
BtsCI GGATG 1 cut(s) 31
Cac8I GCNNGC 1 cut(s) 99
CviAII CATG 1 cut(s) 107
CviJI RGCY 2 cut(s) 60, 166
CviKI_1 RGCY 2 cut(s) 60, 166
Eco130I CCWWGG 1 cut(s) 167
EcoRII CCWGG 2 cut(s) 89, 122
EcoT14I CCWWGG 1 cut(s) 167
EcoT22I ATGCAT 1 cut(s) 108
ErhI CCWWGG 1 cut(s) 167
FaeI CATG 1 cut(s) 110
FaiI YATR 4 cut(s) 44, 108, 120, 200
FatI CATG 1 cut(s) 106
FauI CCCGC 1 cut(s) 59
FokI GGATG 1 cut(s) 38
FspBI CTAG 2 cut(s) 98, 168
GsuI CTGGAG 1 cut(s) 152
Hin1II CATG 1 cut(s) 110
Hpy166II GTNNAC 1 cut(s) 151
Hpy188I TCNGA 1 cut(s) 161
Hpy8I GTNNAC 1 cut(s) 151
HpyAV CCTTC 1 cut(s) 196
HpyCH4III ACNGT 1 cut(s) 113
HpyCH4IV ACGT 1 cut(s) 155
HpyCH4V TGCA 2 cut(s) 19, 106
HpyF10VI GCNNNNNNNGC 1 cut(s) 103
HpySE526I ACGT 1 cut(s) 155
Hsp92II CATG 1 cut(s) 110
LpnPI CCDG 5 cut(s) 76, 103, 109, 116, 136
MaeI CTAG 2 cut(s) 98, 168
MaeII ACGT 1 cut(s) 155
MhlI GDGCHC 1 cut(s) 57
MmeI TCCRAC 2 cut(s) 120, 154
MnlI CCTC 3 cut(s) 16, 129, 136
Mph1103I ATGCAT 1 cut(s) 108
MslI CAYNNNNRTG 1 cut(s) 111
MspR9I CCNGG 2 cut(s) 91, 124
Mva1269I GAATGC 1 cut(s) 37
MvaI CCWGG 2 cut(s) 91, 124
MwoI GCNNNNNNNGC 1 cut(s) 103
NheI GCTAGC 1 cut(s) 97
NlaIII CATG 1 cut(s) 110
NsiI ATGCAT 1 cut(s) 108
PctI GAATGC 1 cut(s) 37
Psp6I CCWGG 2 cut(s) 89, 122
PspGI CCWGG 2 cut(s) 89, 122
RseI CAYNNNNRTG 1 cut(s) 111
ScrFI CCNGG 2 cut(s) 91, 124
SduI GDGCHC 1 cut(s) 57
SetI ASST 3 cut(s) 62, 140, 158
SmiMI CAYNNNNRTG 1 cut(s) 111
SsiI CCGC 1 cut(s) 66
SspMI CTAG 2 cut(s) 98, 168
StyD4I CCNGG 2 cut(s) 89, 122
StyI CCWWGG 1 cut(s) 167
TaaI ACNGT 1 cut(s) 113
TaiI ACGT 1 cut(s) 158
TspDTI ATGAA 1 cut(s) 215
XmaJI CCTAGG 1 cut(s) 167
XspI CTAG 2 cut(s) 98, 168
Zsp2I ATGCAT 1 cut(s) 108
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.