PXA domain
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| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT1G15240 AT1G15240 AT1G15240 AT1G15240 AT1G15240 |
| fragaria_vesca | FvH4_6g31500 FvH4_6g31500 FvH4_6g31500 FvH4_6g31500 FvH4_6g31500 FvH4_6g31500 FvH4_6g31500 |
| malus_domestica | MD09G1210500.v1.1 MD17G1193500.v1.1 |
| prunus_persica | Prupe.3G068900_v2.0.a1 Prupe.3G068900_v2.0.a1 Prupe.3G068900_v2.0.a1 |
| pyrus_communis | pycom09g12810 pycom17g19950 |
| rosa_chinensis | RchiOBHm_Chr2g0138361 |
| rosa_laevigata | RLG00000019739 |
| rosa_multiflora | Rmu_sc0002475.1_g000001 |
| rosa_roxburghii | Rroxscaffold_2G00106300 |
| rosa_rugosa | Rorug02G0351700 |
| rosa_samantha | Rh2AG400000 Rh2BG408400 Rh2CG386200 Rh2DG419700 |
| rosa_wichuraiana | Rw2G032540 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 1 cut(s) | 2963 |
| AarI | CACCTGC | 3 cut(s) | 10, 1036, 3139 |
| Acc16I | TGCGCA | 1 cut(s) | 2894 |
| Acc36I | ACCTGC | 3 cut(s) | 10, 1036, 3139 |
| Acc65I | GGTACC | 1 cut(s) | 2725 |
| AccB1I | GGYRCC | 1 cut(s) | 2725 |
| AccBSI | CCGCTC | 1 cut(s) | 3067 |
| AccI | GTMKAC | 1 cut(s) | 3260 |
| AccII | CGCG | 2 cut(s) | 546, 3093 |
| AccIII | TCCGGA | 1 cut(s) | 3268 |
| AciI | CCGC | 8 cut(s) | 58, 544, 1408, 1483, 1922, 2803, 3067, 3135 |
| AclWI | GGATC | 9 cut(s) | 513, 953, 1052, 1057, 2268, 2281, 2804, 2927, 3192 |
| AcoI | YGGCCR | 3 cut(s) | 24, 1000, 2820 |
| AcuI | CTGAAG | 4 cut(s) | 750, 1227, 1548, 2504 |
| AcyI | GRCGYC | 2 cut(s) | 1648, 2128 |
| AfaI | GTAC | 4 cut(s) | 1513, 2150, 2455, 2727 |
| AfiI | CCNNNNNNNGG | 6 cut(s) | 43, 57, 126, 381, 1095, 2442 |
| AflIII | ACRYGT | 1 cut(s) | 1236 |
| AhlI | ACTAGT | 1 cut(s) | 278 |
| AjnI | CCWGG | 4 cut(s) | 818, 1411, 1567, 2551 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 1564, 1596 |
| Alw21I | GWGCWC | 5 cut(s) | 8, 119, 678, 1103, 2746 |
| Alw26I | GTCTC | 4 cut(s) | 1016, 1197, 1620, 2694 |
| AlwI | GGATC | 9 cut(s) | 513, 953, 1052, 1057, 2268, 2281, 2804, 2927, 3192 |
| AlwNI | CAGNNNCTG | 5 cut(s) | 671, 694, 2423, 2890, 2941 |
| Ama87I | CYCGRG | 1 cut(s) | 2144 |
| Aor13HI | TCCGGA | 1 cut(s) | 3268 |
| ApaI | GGGCCC | 1 cut(s) | 921 |
| AseI | ATTAAT | 2 cut(s) | 513, 828 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 2682 |
| Asp718I | GGTACC | 1 cut(s) | 2725 |
| AspLEI | GCGC | 3 cut(s) | 746, 2895, 3095 |
| AspS9I | GGNCC | 6 cut(s) | 34, 413, 917, 918, 1341, 2414 |
| AsuC2I | CCSGG | 2 cut(s) | 32, 349 |
| AsuHPI | GGTGA | 8 cut(s) | 142, 337, 1286, 1619, 1676, 2861, 3009, 3042 |
| AsuII | TTCGAA | 1 cut(s) | 1364 |
| AvaI | CYCGRG | 1 cut(s) | 2144 |
| AvaII | GGWCC | 2 cut(s) | 34, 413 |
| AxyI | CCTNAGG | 1 cut(s) | 3021 |
| BaeGI | GKGCMC | 2 cut(s) | 921, 3334 |
| BaeI | ACNNNNGTAYC | 2 cut(s) | 2445, 2478 |
| BalI | TGGCCA | 2 cut(s) | 1002, 2822 |
| BamHI | GGATCC | 1 cut(s) | 2273 |
| BanI | GGYRCC | 1 cut(s) | 2725 |
| BanII | GRGCYC | 2 cut(s) | 119, 921 |
| BbsI | GAAGAC | 1 cut(s) | 1476 |
| Bbv12I | GWGCWC | 5 cut(s) | 8, 119, 678, 1103, 2746 |
| BceAI | ACGGC | 1 cut(s) | 11 |
| BciT130I | CCWGG | 4 cut(s) | 820, 1413, 1569, 2553 |
| BclI | TGATCA | 2 cut(s) | 337, 3121 |
| BcnI | CCSGG | 2 cut(s) | 32, 349 |
| BcoDI | GTCTC | 4 cut(s) | 1016, 1197, 1620, 2694 |
| BcuI | ACTAGT | 1 cut(s) | 278 |
| BfmI | CTRYAG | 5 cut(s) | 207, 663, 1962, 2715, 2834 |
| BfuAI | ACCTGC | 3 cut(s) | 10, 1036, 3139 |
| BglI | GCCNNNNNGGC | 1 cut(s) | 1756 |
| BglII | AGATCT | 3 cut(s) | 733, 1183, 1724 |
| BlpI | GCTNAGC | 1 cut(s) | 672 |
| BmcAI | AGTACT | 1 cut(s) | 1513 |
| Bme1390I | CCNGG | 6 cut(s) | 32, 349, 820, 1413, 1569, 2553 |
| Bme18I | GGWCC | 2 cut(s) | 34, 413 |
| BmeT110I | CYCGRG | 1 cut(s) | 2144 |
| BmgT120I | GGNCC | 6 cut(s) | 34, 413, 917, 918, 1341, 2414 |
| BmiI | GGNNCC | 5 cut(s) | 35, 918, 919, 2275, 2727 |
| BmrFI | CCNGG | 6 cut(s) | 32, 349, 820, 1413, 1569, 2553 |
| BmrI | ACTGGG | 2 cut(s) | 1702, 3236 |
| BmsI | GCATC | 7 cut(s) | 361, 700, 905, 1816, 2680, 2842, 2980 |
| BmuI | ACTGGG | 2 cut(s) | 1702, 3236 |
| BpiI | GAAGAC | 1 cut(s) | 1476 |
| BplI | GAGNNNNNCTC | 2 cut(s) | 905, 937 |
| BpmI | CTGGAG | 5 cut(s) | 1434, 1809, 2478, 3185, 3263 |
| Bpu1102I | GCTNAGC | 1 cut(s) | 672 |
| Bpu14I | TTCGAA | 1 cut(s) | 1364 |
| BpuEI | CTTGAG | 1 cut(s) | 537 |
| BpuMI | CCSGG | 2 cut(s) | 32, 349 |
| Bsa29I | ATCGAT | 1 cut(s) | 3313 |
| BsaBI | GATNNNNATC | 1 cut(s) | 161 |
| BsaHI | GRCGYC | 2 cut(s) | 1648, 2128 |
| BsaI | GGTCTC | 1 cut(s) | 2694 |
| BsaJI | CCNNGG | 5 cut(s) | 231, 818, 864, 1411, 3180 |
| BsaWI | WCCGGW | 2 cut(s) | 400, 3268 |
| Bsc4I | CCNNNNNNNGG | 6 cut(s) | 43, 57, 126, 381, 1095, 2442 |
| Bse118I | RCCGGY | 1 cut(s) | 1750 |
| Bse21I | CCTNAGG | 1 cut(s) | 3021 |
| Bse3DI | GCAATG | 5 cut(s) | 746, 1061, 1103, 1135, 1617 |
| Bse8I | GATNNNNATC | 1 cut(s) | 161 |
| BseAI | TCCGGA | 1 cut(s) | 3268 |
| BseBI | CCWGG | 4 cut(s) | 820, 1413, 1569, 2553 |
| BseCI | ATCGAT | 1 cut(s) | 3313 |
| BseDI | CCNNGG | 5 cut(s) | 231, 818, 864, 1411, 3180 |
| BseGI | GGATG | 8 cut(s) | 706, 1465, 1495, 1591, 2071, 2798, 2850, 2971 |
| BseJI | GATNNNNATC | 1 cut(s) | 161 |
| BseLI | CCNNNNNNNGG | 6 cut(s) | 43, 57, 126, 381, 1095, 2442 |
| BseMI | GCAATG | 5 cut(s) | 746, 1061, 1103, 1135, 1617 |
| BseMII | CTCAG | 5 cut(s) | 282, 354, 663, 2552, 3035 |
| BseRI | GAGGAG | 3 cut(s) | 109, 1176, 2129 |
| BseSI | GKGCMC | 2 cut(s) | 921, 3334 |
| BsgI | GTGCAG | 1 cut(s) | 804 |
| Bsh1236I | CGCG | 2 cut(s) | 546, 3093 |
| BshNI | GGYRCC | 1 cut(s) | 2725 |
| BshVI | ATCGAT | 1 cut(s) | 3313 |
| BsiHKAI | GWGCWC | 5 cut(s) | 8, 119, 678, 1103, 2746 |
| BsiHKCI | CYCGRG | 1 cut(s) | 2144 |
| BsiSI | CCGG | 5 cut(s) | 31, 349, 401, 1751, 3269 |
| BslFI | GGGAC | 3 cut(s) | 47, 801, 2303 |
| BslI | CCNNNNNNNGG | 6 cut(s) | 43, 57, 126, 381, 1095, 2442 |
| BsmAI | GTCTC | 4 cut(s) | 1016, 1197, 1620, 2694 |
| BsmFI | GGGAC | 3 cut(s) | 47, 801, 2303 |
| BsmI | GAATGC | 1 cut(s) | 1288 |
| Bso31I | GGTCTC | 1 cut(s) | 2694 |
| BsoBI | CYCGRG | 1 cut(s) | 2144 |
| Bsp119I | TTCGAA | 1 cut(s) | 1364 |
| Bsp120I | GGGCCC | 1 cut(s) | 917 |
| Bsp1286I | GDGCHC | 7 cut(s) | 8, 119, 678, 921, 1103, 2746, 3334 |
| Bsp13I | TCCGGA | 1 cut(s) | 3268 |
| Bsp1720I | GCTNAGC | 1 cut(s) | 672 |
| BspACI | CCGC | 8 cut(s) | 58, 544, 1408, 1483, 1922, 2803, 3067, 3135 |
| BspCNI | CTCAG | 5 cut(s) | 283, 355, 664, 2551, 3034 |
| BspDI | ATCGAT | 1 cut(s) | 3313 |
| BspEI | TCCGGA | 1 cut(s) | 3268 |
| BspFNI | CGCG | 2 cut(s) | 546, 3093 |
| BspLI | GGNNCC | 5 cut(s) | 35, 918, 919, 2275, 2727 |
| BspMAI | CTGCAG | 2 cut(s) | 211, 667 |
| BspMI | ACCTGC | 3 cut(s) | 10, 1036, 3139 |
| BspPI | GGATC | 9 cut(s) | 513, 953, 1052, 1057, 2268, 2281, 2804, 2927, 3192 |
| BspT104I | TTCGAA | 1 cut(s) | 1364 |
| BspT107I | GGYRCC | 1 cut(s) | 2725 |
| BspTNI | GGTCTC | 1 cut(s) | 2694 |
| BsrBI | CCGCTC | 1 cut(s) | 3067 |
| BsrDI | GCAATG | 5 cut(s) | 746, 1061, 1103, 1135, 1617 |
| BsrFI | RCCGGY | 1 cut(s) | 1750 |
| BssAI | RCCGGY | 1 cut(s) | 1750 |
| BssECI | CCNNGG | 5 cut(s) | 231, 818, 864, 1411, 3180 |
| BssNI | GRCGYC | 2 cut(s) | 1648, 2128 |
| BssT1I | CCWWGG | 1 cut(s) | 3180 |
| Bst2UI | CCWGG | 4 cut(s) | 820, 1413, 1569, 2553 |
| Bst4CI | ACNGT | 9 cut(s) | 592, 883, 1315, 1547, 1669, 1883, 1966, 2355, 2943 |
| Bst6I | CTCTTC | 3 cut(s) | 2015, 2435, 2653 |
| BstACI | GRCGYC | 2 cut(s) | 1648, 2128 |
| BstBI | TTCGAA | 1 cut(s) | 1364 |
| BstC8I | GCNNGC | 5 cut(s) | 8, 141, 224, 430, 466 |
| BstDEI | CTNAG | 7 cut(s) | 291, 363, 672, 955, 2297, 2538, 3021 |
| BstENI | CCTNNNNNAGG | 2 cut(s) | 41, 2440 |
| BstF5I | GGATG | 8 cut(s) | 706, 1465, 1495, 1591, 2071, 2798, 2850, 2971 |
| BstFNI | CGCG | 2 cut(s) | 546, 3093 |
| BstHHI | GCGC | 3 cut(s) | 746, 2895, 3095 |
| BstMAI | GTCTC | 4 cut(s) | 1016, 1197, 1620, 2694 |
| BstMWI | GCNNNNNNNGC | 8 cut(s) | 16, 87, 1756, 2125, 2170, 2932, 2977, 3134 |
| BstNI | CCWGG | 4 cut(s) | 820, 1413, 1569, 2553 |
| BstNSI | RCATGY | 3 cut(s) | 196, 1240, 1483 |
| BstSCI | CCNGG | 6 cut(s) | 30, 347, 818, 1411, 1567, 2551 |
| BstSFI | CTRYAG | 5 cut(s) | 207, 663, 1962, 2715, 2834 |
| BstSLI | GKGCMC | 2 cut(s) | 921, 3334 |
| BstUI | CGCG | 2 cut(s) | 546, 3093 |
| BstV2I | GAAGAC | 1 cut(s) | 1476 |
| BstX2I | RGATCY | 8 cut(s) | 505, 733, 958, 1057, 1183, 1724, 2273, 3184 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 2789 |
| BstYI | RGATCY | 8 cut(s) | 505, 733, 958, 1057, 1183, 1724, 2273, 3184 |
| Bsu15I | ATCGAT | 1 cut(s) | 3313 |
| Bsu36I | CCTNAGG | 1 cut(s) | 3021 |
| BsuTUI | ATCGAT | 1 cut(s) | 3313 |
| BtsCI | GGATG | 8 cut(s) | 706, 1465, 1495, 1591, 2071, 2798, 2850, 2971 |
| BtsIMutI | CAGTG | 6 cut(s) | 272, 1552, 1888, 2351, 2424, 2589 |
| BveI | ACCTGC | 3 cut(s) | 10, 1036, 3139 |
| Cac8I | GCNNGC | 5 cut(s) | 8, 141, 224, 430, 466 |
| CaiI | CAGNNNCTG | 5 cut(s) | 671, 694, 2423, 2890, 2941 |
| CfoI | GCGC | 3 cut(s) | 746, 2895, 3095 |
| Cfr10I | RCCGGY | 1 cut(s) | 1750 |
| Cfr13I | GGNCC | 6 cut(s) | 34, 413, 917, 918, 1341, 2414 |
| ClaI | ATCGAT | 1 cut(s) | 3313 |
| CseI | GACGC | 4 cut(s) | 70, 1656, 2117, 3099 |
| Csp6I | GTAC | 4 cut(s) | 1512, 2149, 2454, 2726 |
| CviAII | CATG | 6 cut(s) | 193, 469, 1237, 1480, 3125, 3299 |
| CviQI | GTAC | 4 cut(s) | 1512, 2149, 2454, 2726 |
| DdeI | CTNAG | 7 cut(s) | 291, 363, 672, 955, 2297, 2538, 3021 |
| EaeI | YGGCCR | 3 cut(s) | 24, 1000, 2820 |
| Eam1104I | CTCTTC | 3 cut(s) | 2015, 2435, 2653 |
| EarI | CTCTTC | 3 cut(s) | 2015, 2435, 2653 |
| EciI | GGCGGA | 2 cut(s) | 1397, 2818 |
| Ecl136II | GAGCTC | 1 cut(s) | 117 |
| Eco130I | CCWWGG | 1 cut(s) | 3180 |
| Eco147I | AGGCCT | 1 cut(s) | 727 |
| Eco24I | GRGCYC | 2 cut(s) | 119, 921 |
| Eco31I | GGTCTC | 1 cut(s) | 2694 |
| Eco47I | GGWCC | 2 cut(s) | 34, 413 |
| Eco53kI | GAGCTC | 1 cut(s) | 117 |
| Eco57I | CTGAAG | 4 cut(s) | 750, 1227, 1548, 2504 |
| Eco81I | CCTNAGG | 1 cut(s) | 3021 |
| Eco88I | CYCGRG | 1 cut(s) | 2144 |
| EcoICRI | GAGCTC | 1 cut(s) | 117 |
| EcoNI | CCTNNNNNAGG | 2 cut(s) | 41, 2440 |
| EcoO109I | RGGNCCY | 3 cut(s) | 34, 917, 918 |
| EcoRII | CCWGG | 4 cut(s) | 818, 1411, 1567, 2551 |
| EcoT14I | CCWWGG | 1 cut(s) | 3180 |
| EcoT38I | GRGCYC | 2 cut(s) | 119, 921 |
| ErhI | CCWWGG | 1 cut(s) | 3180 |
| FaeI | CATG | 6 cut(s) | 196, 472, 1240, 1483, 3128, 3302 |
| FalI | AAGNNNNNCTT | 6 cut(s) | 1498, 1530, 1665, 1697, 2561, 2593 |
| FaqI | GGGAC | 3 cut(s) | 47, 801, 2303 |
| FatI | CATG | 6 cut(s) | 192, 468, 1236, 1479, 3124, 3298 |
| FauNDI | CATATG | 1 cut(s) | 521 |
| FbaI | TGATCA | 2 cut(s) | 337, 3121 |
| FblI | GTMKAC | 1 cut(s) | 3260 |
| FokI | GGATG | 8 cut(s) | 713, 1472, 1502, 1598, 2078, 2805, 2857, 2958 |
| FriOI | GRGCYC | 2 cut(s) | 119, 921 |
| FspI | TGCGCA | 1 cut(s) | 2894 |
| GlaI | GCGC | 3 cut(s) | 745, 2894, 3094 |
| GsuI | CTGGAG | 5 cut(s) | 1434, 1809, 2478, 3185, 3263 |
| HapII | CCGG | 5 cut(s) | 31, 349, 401, 1751, 3269 |
| HgaI | GACGC | 4 cut(s) | 70, 1656, 2117, 3099 |
| HhaI | GCGC | 3 cut(s) | 746, 2895, 3095 |
| Hin1I | GRCGYC | 2 cut(s) | 1648, 2128 |
| Hin1II | CATG | 6 cut(s) | 196, 472, 1240, 1483, 3128, 3302 |
| Hin6I | GCGC | 3 cut(s) | 744, 2893, 3093 |
| HinP1I | GCGC | 3 cut(s) | 744, 2893, 3093 |
| HincII | GTYRAC | 4 cut(s) | 2184, 2305, 2362, 3261 |
| HindII | GTYRAC | 4 cut(s) | 2184, 2305, 2362, 3261 |
| HindIII | AAGCTT | 2 cut(s) | 1777, 2808 |
| HpaII | CCGG | 5 cut(s) | 31, 349, 401, 1751, 3269 |
| HphI | GGTGA | 8 cut(s) | 142, 337, 1286, 1619, 1676, 2861, 3009, 3042 |
| Hpy166II | GTNNAC | 7 cut(s) | 133, 2047, 2184, 2305, 2362, 2518, 3261 |
| Hpy8I | GTNNAC | 7 cut(s) | 133, 2047, 2184, 2305, 2362, 2518, 3261 |
| Hpy99I | CGWCG | 2 cut(s) | 86, 3093 |
| HpyCH4III | ACNGT | 9 cut(s) | 592, 883, 1315, 1547, 1669, 1883, 1966, 2355, 2943 |
| HpyF10VI | GCNNNNNNNGC | 8 cut(s) | 16, 87, 1756, 2125, 2170, 2932, 2977, 3134 |
| HpyF3I | CTNAG | 7 cut(s) | 291, 363, 672, 955, 2297, 2538, 3021 |
| Hsp92I | GRCGYC | 2 cut(s) | 1648, 2128 |
| Hsp92II | CATG | 6 cut(s) | 196, 472, 1240, 1483, 3128, 3302 |
| HspAI | GCGC | 3 cut(s) | 744, 2893, 3093 |
| Kpn2I | TCCGGA | 1 cut(s) | 3268 |
| KpnI | GGTACC | 1 cut(s) | 2729 |
| Ksp22I | TGATCA | 2 cut(s) | 337, 3121 |
| LmnI | GCTCC | 8 cut(s) | 122, 535, 1098, 1222, 2116, 2749, 2784, 3244 |
| LweI | GCATC | 7 cut(s) | 361, 700, 905, 1816, 2680, 2842, 2980 |
| MbiI | CCGCTC | 1 cut(s) | 3067 |
| MflI | RGATCY | 8 cut(s) | 505, 733, 958, 1057, 1183, 1724, 2273, 3184 |
| MhlI | GDGCHC | 7 cut(s) | 8, 119, 678, 921, 1103, 2746, 3334 |
| MlsI | TGGCCA | 2 cut(s) | 1002, 2822 |
| MluNI | TGGCCA | 2 cut(s) | 1002, 2822 |
| MlyI | GAGTC | 5 cut(s) | 612, 1832, 2021, 2300, 2469 |
| MmeI | TCCRAC | 2 cut(s) | 1467, 3124 |
| Mox20I | TGGCCA | 2 cut(s) | 1002, 2822 |
| MroI | TCCGGA | 1 cut(s) | 3268 |
| MroXI | GAANNNNTTC | 1 cut(s) | 2682 |
| MscI | TGGCCA | 2 cut(s) | 1002, 2822 |
| MslI | CAYNNNNRTG | 1 cut(s) | 857 |
| Msp20I | TGGCCA | 2 cut(s) | 1002, 2822 |
| MspI | CCGG | 5 cut(s) | 31, 349, 401, 1751, 3269 |
| MspR9I | CCNGG | 6 cut(s) | 32, 349, 820, 1413, 1569, 2553 |
| Mva1269I | GAATGC | 1 cut(s) | 1288 |
| MvaI | CCWGG | 4 cut(s) | 820, 1413, 1569, 2553 |
| MvnI | CGCG | 2 cut(s) | 546, 3093 |
| MwoI | GCNNNNNNNGC | 8 cut(s) | 16, 87, 1756, 2125, 2170, 2932, 2977, 3134 |
| NciI | CCSGG | 2 cut(s) | 32, 349 |
| NdeI | CATATG | 1 cut(s) | 521 |
| NlaIII | CATG | 6 cut(s) | 196, 472, 1240, 1483, 3128, 3302 |
| NlaIV | GGNNCC | 5 cut(s) | 35, 918, 919, 2275, 2727 |
| NmeAIII | GCCGAG | 1 cut(s) | 212 |
| NmuCI | GTSAC | 6 cut(s) | 177, 370, 2024, 2419, 2571, 2629 |
| NsbI | TGCGCA | 1 cut(s) | 2894 |
| NspI | RCATGY | 3 cut(s) | 196, 1240, 1483 |
| NspV | TTCGAA | 1 cut(s) | 1364 |
| PaqCI | CACCTGC | 3 cut(s) | 10, 1036, 3139 |
| PceI | AGGCCT | 1 cut(s) | 727 |
| PciI | ACATGT | 1 cut(s) | 1236 |
| PcsI | WCGNNNNNNNCGW | 1 cut(s) | 78 |
| PctI | GAATGC | 1 cut(s) | 1288 |
| PdmI | GAANNNNTTC | 1 cut(s) | 2682 |
| PfeI | GAWTC | 9 cut(s) | 582, 1432, 1562, 1678, 1850, 1973, 2534, 2594, 2672 |
| PflFI | GACNNNGTC | 1 cut(s) | 411 |
| PfoI | TCCNGGA | 2 cut(s) | 30, 1567 |
| PleI | GAGTC | 5 cut(s) | 612, 1832, 2021, 2300, 2468 |
| PpsI | GAGTC | 5 cut(s) | 612, 1832, 2021, 2300, 2468 |
| PpuMI | RGGWCCY | 1 cut(s) | 34 |
| PscI | ACATGT | 1 cut(s) | 1236 |
| PshBI | ATTAAT | 2 cut(s) | 513, 828 |
| PsiI | TTATAA | 1 cut(s) | 2963 |
| Psp124BI | GAGCTC | 1 cut(s) | 119 |
| Psp5II | RGGWCCY | 1 cut(s) | 34 |
| Psp6I | CCWGG | 4 cut(s) | 818, 1411, 1567, 2551 |
| PspGI | CCWGG | 4 cut(s) | 818, 1411, 1567, 2551 |
| PspN4I | GGNNCC | 5 cut(s) | 35, 918, 919, 2275, 2727 |
| PspOMI | GGGCCC | 1 cut(s) | 917 |
| PspPI | GGNCC | 6 cut(s) | 34, 413, 917, 918, 1341, 2414 |
| PspPPI | RGGWCCY | 1 cut(s) | 34 |
| PstI | CTGCAG | 2 cut(s) | 211, 667 |
| PstNI | CAGNNNCTG | 5 cut(s) | 671, 694, 2423, 2890, 2941 |
| PsuI | RGATCY | 8 cut(s) | 505, 733, 958, 1057, 1183, 1724, 2273, 3184 |
| PsyI | GACNNNGTC | 1 cut(s) | 411 |
| RsaI | GTAC | 4 cut(s) | 1513, 2150, 2455, 2727 |
| RsaNI | GTAC | 4 cut(s) | 1512, 2149, 2454, 2726 |
| RseI | CAYNNNNRTG | 1 cut(s) | 857 |
| SacI | GAGCTC | 1 cut(s) | 119 |
| SalI | GTCGAC | 1 cut(s) | 3259 |
| Sau96I | GGNCC | 6 cut(s) | 34, 413, 917, 918, 1341, 2414 |
| ScaI | AGTACT | 1 cut(s) | 1513 |
| SchI | GAGTC | 5 cut(s) | 612, 1832, 2021, 2300, 2469 |
| ScrFI | CCNGG | 6 cut(s) | 32, 349, 820, 1413, 1569, 2553 |
| SduI | GDGCHC | 7 cut(s) | 8, 119, 678, 921, 1103, 2746, 3334 |
| SfaNI | GCATC | 7 cut(s) | 361, 700, 905, 1816, 2680, 2842, 2980 |
| SfcI | CTRYAG | 5 cut(s) | 207, 663, 1962, 2715, 2834 |
| SfuI | TTCGAA | 1 cut(s) | 1364 |
| SinI | GGWCC | 2 cut(s) | 34, 413 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 857 |
| SmlI | CTYRAG | 1 cut(s) | 552 |
| SmoI | CTYRAG | 1 cut(s) | 552 |
| SpeI | ACTAGT | 1 cut(s) | 278 |
| SseBI | AGGCCT | 1 cut(s) | 727 |
| SsiI | CCGC | 8 cut(s) | 58, 544, 1408, 1483, 1922, 2803, 3067, 3135 |
| SspI | AATATT | 3 cut(s) | 1834, 2014, 2958 |
| SstI | GAGCTC | 1 cut(s) | 119 |
| StuI | AGGCCT | 1 cut(s) | 727 |
| StyD4I | CCNGG | 6 cut(s) | 30, 347, 818, 1411, 1567, 2551 |
| StyI | CCWWGG | 1 cut(s) | 3180 |
| TaaI | ACNGT | 9 cut(s) | 592, 883, 1315, 1547, 1669, 1883, 1966, 2355, 2943 |
| TaqI | TCGA | 9 cut(s) | 324, 1364, 1441, 1822, 2346, 2859, 3088, 3260, 3313 |
| TaqII | GACCGA | 2 cut(s) | 389, 878 |
| TatI | WGTACW | 2 cut(s) | 1511, 2148 |
| TauI | GCSGC | 2 cut(s) | 3070, 3137 |
| TfiI | GAWTC | 9 cut(s) | 582, 1432, 1562, 1678, 1850, 1973, 2534, 2594, 2672 |
| TscAI | CASTG | 6 cut(s) | 272, 1552, 1888, 2358, 2424, 2596 |
| TseFI | GTSAC | 6 cut(s) | 177, 370, 2024, 2419, 2571, 2629 |
| Tsp45I | GTSAC | 6 cut(s) | 177, 370, 2024, 2419, 2571, 2629 |
| TspGWI | ACGGA | 3 cut(s) | 743, 1678, 2078 |
| TspRI | CASTG | 6 cut(s) | 272, 1552, 1888, 2358, 2424, 2596 |
| Tth111I | GACNNNGTC | 1 cut(s) | 411 |
| VpaK11BI | GGWCC | 2 cut(s) | 34, 413 |
| VspI | ATTAAT | 2 cut(s) | 513, 828 |
| XagI | CCTNNNNNAGG | 2 cut(s) | 41, 2440 |
| XbaI | TCTAGA | 1 cut(s) | 1727 |
| XceI | RCATGY | 3 cut(s) | 196, 1240, 1483 |
| XcmI | CCANNNNNNNNNTGG | 2 cut(s) | 1015, 2755 |
| XmiI | GTMKAC | 1 cut(s) | 3260 |
| XmnI | GAANNNNTTC | 1 cut(s) | 2682 |
| ZrmI | AGTACT | 1 cut(s) | 1513 |