PXA domain
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| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT1G15240 AT1G15240 AT1G15240 AT1G15240 AT1G15240 |
| fragaria_vesca | FvH4_6g31500 FvH4_6g31500 FvH4_6g31500 FvH4_6g31500 FvH4_6g31500 FvH4_6g31500 FvH4_6g31500 |
| malus_domestica | MD09G1210500.v1.1 MD17G1193500.v1.1 |
| prunus_persica | Prupe.3G068900_v2.0.a1 Prupe.3G068900_v2.0.a1 Prupe.3G068900_v2.0.a1 |
| pyrus_communis | pycom09g12810 pycom17g19950 |
| rosa_chinensis | RchiOBHm_Chr2g0138361 |
| rosa_laevigata | RLG00000019739 |
| rosa_multiflora | Rmu_sc0002475.1_g000001 |
| rosa_roxburghii | Rroxscaffold_2G00106300 |
| rosa_rugosa | Rorug02G0351700 |
| rosa_samantha | Rh2AG400000 Rh2BG408400 Rh2CG386200 Rh2DG419700 |
| rosa_wichuraiana | Rw2G032540 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 1 cut(s) | 3002 |
| AarI | CACCTGC | 1 cut(s) | 3175 |
| Acc36I | ACCTGC | 1 cut(s) | 3175 |
| AccB1I | GGYRCC | 3 cut(s) | 2498, 2624, 2764 |
| AccB7I | CCANNNNNTGG | 1 cut(s) | 1333 |
| AccII | CGCG | 1 cut(s) | 546 |
| AciI | CCGC | 6 cut(s) | 58, 544, 884, 1444, 1519, 2842 |
| AcoI | YGGCCR | 3 cut(s) | 1000, 1750, 2859 |
| AcuI | CTGAAG | 4 cut(s) | 750, 1470, 1584, 3221 |
| AcvI | CACGTG | 1 cut(s) | 1028 |
| AdeI | CACNNNGTG | 1 cut(s) | 2624 |
| AfaI | GTAC | 5 cut(s) | 241, 888, 1549, 1785, 2192 |
| AfiI | CCNNNNNNNGG | 6 cut(s) | 43, 57, 126, 1095, 1333, 2484 |
| AflII | CTTAAG | 1 cut(s) | 1067 |
| AflIII | ACRYGT | 3 cut(s) | 1025, 1027, 1236 |
| AhlI | ACTAGT | 1 cut(s) | 278 |
| AjiI | CACGTC | 1 cut(s) | 3128 |
| AjnI | CCWGG | 2 cut(s) | 1447, 1603 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 1600, 1632 |
| Alw21I | GWGCWC | 5 cut(s) | 8, 678, 746, 1103, 1456 |
| Alw26I | GTCTC | 6 cut(s) | 610, 1016, 1197, 1568, 1656, 2694 |
| AlwNI | CAGNNNCTG | 2 cut(s) | 671, 694 |
| ApaI | GGGCCC | 1 cut(s) | 920 |
| AseI | ATTAAT | 3 cut(s) | 513, 828, 3149 |
| Asp700I | GAANNNNTTC | 2 cut(s) | 1396, 2849 |
| AspLEI | GCGC | 2 cut(s) | 3215, 3370 |
| AspS9I | GGNCC | 8 cut(s) | 34, 413, 916, 917, 1324, 1347, 2456, 3061 |
| AsuC2I | CCSGG | 1 cut(s) | 32 |
| AsuHPI | GGTGA | 6 cut(s) | 337, 1286, 1655, 2900, 3045, 3078 |
| AsuII | TTCGAA | 2 cut(s) | 923, 1230 |
| AvaII | GGWCC | 3 cut(s) | 34, 413, 1324 |
| AxyI | CCTNAGG | 1 cut(s) | 3057 |
| BaeGI | GKGCMC | 2 cut(s) | 27, 920 |
| BalI | TGGCCA | 2 cut(s) | 1752, 2861 |
| BamHI | GGATCC | 1 cut(s) | 2315 |
| BanI | GGYRCC | 3 cut(s) | 2498, 2624, 2764 |
| BanII | GRGCYC | 3 cut(s) | 920, 1103, 1456 |
| BbrPI | CACGTG | 1 cut(s) | 1028 |
| BbsI | GAAGAC | 3 cut(s) | 1077, 1290, 3028 |
| Bbv12I | GWGCWC | 5 cut(s) | 8, 678, 746, 1103, 1456 |
| BceAI | ACGGC | 3 cut(s) | 1015, 1671, 2069 |
| BciT130I | CCWGG | 2 cut(s) | 1449, 1605 |
| BcnI | CCSGG | 1 cut(s) | 32 |
| BcoDI | GTCTC | 6 cut(s) | 610, 1016, 1197, 1568, 1656, 2694 |
| BcuI | ACTAGT | 1 cut(s) | 278 |
| BfmI | CTRYAG | 9 cut(s) | 207, 333, 663, 1017, 2493, 2754, 2873, 3072, 3168 |
| BfrI | CTTAAG | 1 cut(s) | 1067 |
| BfuAI | ACCTGC | 1 cut(s) | 3175 |
| BglII | AGATCT | 3 cut(s) | 376, 1183, 1760 |
| BmcAI | AGTACT | 2 cut(s) | 241, 1549 |
| Bme1390I | CCNGG | 3 cut(s) | 32, 1449, 1605 |
| Bme18I | GGWCC | 3 cut(s) | 34, 413, 1324 |
| BmgBI | CACGTC | 1 cut(s) | 3128 |
| BmgT120I | GGNCC | 8 cut(s) | 34, 413, 916, 917, 1324, 1347, 2456, 3061 |
| BmiI | GGNNCC | 8 cut(s) | 35, 918, 1151, 2317, 2490, 2500, 2626, 2766 |
| BmrFI | CCNGG | 3 cut(s) | 32, 1449, 1605 |
| BmrI | ACTGGG | 1 cut(s) | 1738 |
| BmuI | ACTGGG | 1 cut(s) | 1738 |
| BpiI | GAAGAC | 3 cut(s) | 1077, 1290, 3028 |
| BpmI | CTGGAG | 4 cut(s) | 1461, 1470, 1845, 3299 |
| Bpu14I | TTCGAA | 2 cut(s) | 923, 1230 |
| BpuEI | CTTGAG | 1 cut(s) | 1191 |
| BpuMI | CCSGG | 1 cut(s) | 32 |
| BsaAI | YACGTR | 1 cut(s) | 1028 |
| BsaJI | CCNNGG | 4 cut(s) | 231, 818, 1447, 3216 |
| BsaWI | WCCGGW | 1 cut(s) | 2584 |
| Bsc4I | CCNNNNNNNGG | 6 cut(s) | 43, 57, 126, 1095, 1333, 2484 |
| Bse1I | ACTGG | 8 cut(s) | 429, 976, 1478, 1708, 1744, 2233, 2909, 3267 |
| Bse21I | CCTNAGG | 1 cut(s) | 3057 |
| Bse3DI | GCAATG | 1 cut(s) | 1103 |
| BseBI | CCWGG | 2 cut(s) | 1449, 1605 |
| BseDI | CCNNGG | 4 cut(s) | 231, 818, 1447, 3216 |
| BseLI | CCNNNNNNNGG | 6 cut(s) | 43, 57, 126, 1095, 1333, 2484 |
| BseMI | GCAATG | 1 cut(s) | 1103 |
| BseMII | CTCAG | 8 cut(s) | 354, 663, 855, 1094, 1377, 1433, 2178, 3071 |
| BseNI | ACTGG | 8 cut(s) | 429, 976, 1478, 1708, 1744, 2233, 2909, 3267 |
| BseRI | GAGGAG | 4 cut(s) | 109, 1176, 1541, 2171 |
| BseSI | GKGCMC | 2 cut(s) | 27, 920 |
| BseYI | CCCAGC | 1 cut(s) | 348 |
| BsgI | GTGCAG | 1 cut(s) | 804 |
| Bsh1236I | CGCG | 1 cut(s) | 546 |
| BshNI | GGYRCC | 3 cut(s) | 2498, 2624, 2764 |
| BsiHKAI | GWGCWC | 5 cut(s) | 8, 678, 746, 1103, 1456 |
| BsiSI | CCGG | 2 cut(s) | 31, 2585 |
| BslFI | GGGAC | 1 cut(s) | 47 |
| BslI | CCNNNNNNNGG | 6 cut(s) | 43, 57, 126, 1095, 1333, 2484 |
| BsmAI | GTCTC | 6 cut(s) | 610, 1016, 1197, 1568, 1656, 2694 |
| BsmBI | CGTCTC | 1 cut(s) | 2694 |
| BsmFI | GGGAC | 1 cut(s) | 47 |
| Bsp119I | TTCGAA | 2 cut(s) | 923, 1230 |
| Bsp120I | GGGCCC | 1 cut(s) | 916 |
| Bsp1286I | GDGCHC | 7 cut(s) | 8, 27, 678, 746, 920, 1103, 1456 |
| BspACI | CCGC | 6 cut(s) | 58, 544, 884, 1444, 1519, 2842 |
| BspCNI | CTCAG | 8 cut(s) | 355, 664, 856, 1093, 1378, 1432, 2179, 3070 |
| BspFNI | CGCG | 1 cut(s) | 546 |
| BspLI | GGNNCC | 8 cut(s) | 35, 918, 1151, 2317, 2490, 2500, 2626, 2766 |
| BspMAI | CTGCAG | 4 cut(s) | 211, 667, 1021, 3172 |
| BspMI | ACCTGC | 1 cut(s) | 3175 |
| BspQI | GCTCTTC | 1 cut(s) | 2581 |
| BspT104I | TTCGAA | 2 cut(s) | 923, 1230 |
| BspT107I | GGYRCC | 3 cut(s) | 2498, 2624, 2764 |
| BspTI | CTTAAG | 1 cut(s) | 1067 |
| BsrDI | GCAATG | 1 cut(s) | 1103 |
| BsrI | ACTGG | 8 cut(s) | 429, 976, 1478, 1708, 1744, 2233, 2909, 3267 |
| BssECI | CCNNGG | 4 cut(s) | 231, 818, 1447, 3216 |
| BssT1I | CCWWGG | 3 cut(s) | 231, 818, 3216 |
| Bst2UI | CCWGG | 2 cut(s) | 1449, 1605 |
| Bst4CI | ACNGT | 5 cut(s) | 1321, 1583, 1922, 2308, 2397 |
| Bst6I | CTCTTC | 6 cut(s) | 755, 1566, 2057, 2477, 2581, 2692 |
| BstAFI | CTTAAG | 1 cut(s) | 1067 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 22 |
| BstBAI | YACGTR | 1 cut(s) | 1028 |
| BstBI | TTCGAA | 2 cut(s) | 923, 1230 |
| BstC8I | GCNNGC | 3 cut(s) | 8, 141, 430 |
| BstENI | CCTNNNNNAGG | 2 cut(s) | 41, 2482 |
| BstFNI | CGCG | 1 cut(s) | 546 |
| BstHHI | GCGC | 2 cut(s) | 3215, 3370 |
| BstMAI | GTCTC | 6 cut(s) | 610, 1016, 1197, 1568, 1656, 2694 |
| BstMWI | GCNNNNNNNGC | 8 cut(s) | 16, 22, 87, 2212, 2296, 2971, 3016, 3170 |
| BstNI | CCWGG | 2 cut(s) | 1449, 1605 |
| BstNSI | RCATGY | 2 cut(s) | 1240, 1519 |
| BstSCI | CCNGG | 3 cut(s) | 30, 1447, 1603 |
| BstSFI | CTRYAG | 9 cut(s) | 207, 333, 663, 1017, 2493, 2754, 2873, 3072, 3168 |
| BstSLI | GKGCMC | 2 cut(s) | 27, 920 |
| BstUI | CGCG | 1 cut(s) | 546 |
| BstV2I | GAAGAC | 3 cut(s) | 1077, 1290, 3028 |
| BstX2I | RGATCY | 8 cut(s) | 376, 505, 958, 1057, 1183, 1760, 2315, 3220 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 2828 |
| BstYI | RGATCY | 8 cut(s) | 376, 505, 958, 1057, 1183, 1760, 2315, 3220 |
| Bsu36I | CCTNAGG | 1 cut(s) | 3057 |
| BtgZI | GCGATG | 1 cut(s) | 1899 |
| BtrI | CACGTC | 1 cut(s) | 3128 |
| BtsI | GCAGTG | 3 cut(s) | 746, 1061, 2016 |
| BtsIMutI | CAGTG | 8 cut(s) | 746, 1061, 1326, 1588, 1927, 2016, 2393, 2628 |
| BveI | ACCTGC | 1 cut(s) | 3175 |
| Cac8I | GCNNGC | 3 cut(s) | 8, 141, 430 |
| CaiI | CAGNNNCTG | 2 cut(s) | 671, 694 |
| CfoI | GCGC | 2 cut(s) | 3215, 3370 |
| Cfr13I | GGNCC | 8 cut(s) | 34, 413, 916, 917, 1324, 1347, 2456, 3061 |
| CseI | GACGC | 2 cut(s) | 70, 474 |
| Csp6I | GTAC | 5 cut(s) | 240, 887, 1548, 1784, 2191 |
| CviAII | CATG | 8 cut(s) | 103, 469, 1095, 1237, 1516, 1862, 1993, 3335 |
| CviQI | GTAC | 5 cut(s) | 240, 887, 1548, 1784, 2191 |
| DraI | TTTAAA | 1 cut(s) | 3364 |
| DraIII | CACNNNGTG | 1 cut(s) | 2624 |
| EaeI | YGGCCR | 3 cut(s) | 1000, 1750, 2859 |
| Eam1104I | CTCTTC | 6 cut(s) | 755, 1566, 2057, 2477, 2581, 2692 |
| EarI | CTCTTC | 6 cut(s) | 755, 1566, 2057, 2477, 2581, 2692 |
| EciI | GGCGGA | 2 cut(s) | 1433, 2857 |
| Ecl136II | GAGCTC | 2 cut(s) | 1101, 1454 |
| Eco130I | CCWWGG | 3 cut(s) | 231, 818, 3216 |
| Eco24I | GRGCYC | 3 cut(s) | 920, 1103, 1456 |
| Eco47I | GGWCC | 3 cut(s) | 34, 413, 1324 |
| Eco53kI | GAGCTC | 2 cut(s) | 1101, 1454 |
| Eco57I | CTGAAG | 4 cut(s) | 750, 1470, 1584, 3221 |
| Eco72I | CACGTG | 1 cut(s) | 1028 |
| Eco81I | CCTNAGG | 1 cut(s) | 3057 |
| EcoICRI | GAGCTC | 2 cut(s) | 1101, 1454 |
| EcoNI | CCTNNNNNAGG | 2 cut(s) | 41, 2482 |
| EcoO109I | RGGNCCY | 3 cut(s) | 34, 916, 917 |
| EcoRII | CCWGG | 2 cut(s) | 1447, 1603 |
| EcoT14I | CCWWGG | 3 cut(s) | 231, 818, 3216 |
| EcoT22I | ATGCAT | 1 cut(s) | 2662 |
| EcoT38I | GRGCYC | 3 cut(s) | 920, 1103, 1456 |
| ErhI | CCWWGG | 3 cut(s) | 231, 818, 3216 |
| Esp3I | CGTCTC | 1 cut(s) | 2694 |
| FaeI | CATG | 8 cut(s) | 106, 472, 1098, 1240, 1519, 1865, 1996, 3338 |
| FalI | AAGNNNNNCTT | 6 cut(s) | 229, 261, 1534, 1566, 1701, 1733 |
| FaqI | GGGAC | 1 cut(s) | 47 |
| FatI | CATG | 8 cut(s) | 102, 468, 1094, 1236, 1515, 1861, 1992, 3334 |
| FauNDI | CATATG | 1 cut(s) | 521 |
| FriOI | GRGCYC | 3 cut(s) | 920, 1103, 1456 |
| GlaI | GCGC | 2 cut(s) | 3214, 3369 |
| GsaI | CCCAGC | 1 cut(s) | 352 |
| GsuI | CTGGAG | 4 cut(s) | 1461, 1470, 1845, 3299 |
| HapII | CCGG | 2 cut(s) | 31, 2585 |
| HgaI | GACGC | 2 cut(s) | 70, 474 |
| HhaI | GCGC | 2 cut(s) | 3215, 3370 |
| Hin1II | CATG | 8 cut(s) | 106, 472, 1098, 1240, 1519, 1865, 1996, 3338 |
| Hin6I | GCGC | 2 cut(s) | 3213, 3368 |
| HinP1I | GCGC | 2 cut(s) | 3213, 3368 |
| HincII | GTYRAC | 4 cut(s) | 1918, 2226, 2347, 2404 |
| HindII | GTYRAC | 4 cut(s) | 1918, 2226, 2347, 2404 |
| HindIII | AAGCTT | 2 cut(s) | 1813, 2288 |
| HpaI | GTTAAC | 2 cut(s) | 1918, 2404 |
| HpaII | CCGG | 2 cut(s) | 31, 2585 |
| HphI | GGTGA | 6 cut(s) | 337, 1286, 1655, 2900, 3045, 3078 |
| Hpy166II | GTNNAC | 7 cut(s) | 1324, 1918, 2226, 2347, 2404, 2435, 2563 |
| Hpy8I | GTNNAC | 7 cut(s) | 1324, 1918, 2226, 2347, 2404, 2435, 2563 |
| Hpy99I | CGWCG | 2 cut(s) | 2172, 3129 |
| HpyCH4III | ACNGT | 5 cut(s) | 1321, 1583, 1922, 2308, 2397 |
| HpyCH4IV | ACGT | 2 cut(s) | 1027, 3127 |
| HpyF10VI | GCNNNNNNNGC | 8 cut(s) | 16, 22, 87, 2212, 2296, 2971, 3016, 3170 |
| HpySE526I | ACGT | 2 cut(s) | 1027, 3127 |
| Hsp92II | CATG | 8 cut(s) | 106, 472, 1098, 1240, 1519, 1865, 1996, 3338 |
| HspAI | GCGC | 2 cut(s) | 3213, 3368 |
| KspAI | GTTAAC | 2 cut(s) | 1918, 2404 |
| LguI | GCTCTTC | 1 cut(s) | 2581 |
| LmnI | GCTCC | 8 cut(s) | 122, 535, 1098, 1222, 1451, 2158, 2823, 3280 |
| MaeII | ACGT | 2 cut(s) | 1027, 3127 |
| MfeI | CAATTG | 2 cut(s) | 591, 2525 |
| MflI | RGATCY | 8 cut(s) | 376, 505, 958, 1057, 1183, 1760, 2315, 3220 |
| MhlI | GDGCHC | 7 cut(s) | 8, 27, 678, 746, 920, 1103, 1456 |
| MlsI | TGGCCA | 2 cut(s) | 1752, 2861 |
| MluNI | TGGCCA | 2 cut(s) | 1752, 2861 |
| MlyI | GAGTC | 4 cut(s) | 612, 1198, 2063, 2342 |
| MmeI | TCCRAC | 2 cut(s) | 1503, 2327 |
| Mox20I | TGGCCA | 2 cut(s) | 1752, 2861 |
| Mph1103I | ATGCAT | 1 cut(s) | 2662 |
| MroXI | GAANNNNTTC | 2 cut(s) | 1396, 2849 |
| MscI | TGGCCA | 2 cut(s) | 1752, 2861 |
| Msp20I | TGGCCA | 2 cut(s) | 1752, 2861 |
| MspCI | CTTAAG | 1 cut(s) | 1067 |
| MspI | CCGG | 2 cut(s) | 31, 2585 |
| MspR9I | CCNGG | 3 cut(s) | 32, 1449, 1605 |
| MunI | CAATTG | 2 cut(s) | 591, 2525 |
| MvaI | CCWGG | 2 cut(s) | 1449, 1605 |
| MvnI | CGCG | 1 cut(s) | 546 |
| MwoI | GCNNNNNNNGC | 8 cut(s) | 16, 22, 87, 2212, 2296, 2971, 3016, 3170 |
| NciI | CCSGG | 1 cut(s) | 32 |
| NdeI | CATATG | 1 cut(s) | 521 |
| NlaIII | CATG | 8 cut(s) | 106, 472, 1098, 1240, 1519, 1865, 1996, 3338 |
| NlaIV | GGNNCC | 8 cut(s) | 35, 918, 1151, 2317, 2490, 2500, 2626, 2766 |
| NmuCI | GTSAC | 5 cut(s) | 370, 1030, 2066, 2461, 2616 |
| NsiI | ATGCAT | 1 cut(s) | 2662 |
| NspI | RCATGY | 2 cut(s) | 1240, 1519 |
| NspV | TTCGAA | 2 cut(s) | 923, 1230 |
| PaqCI | CACCTGC | 1 cut(s) | 3175 |
| PciI | ACATGT | 1 cut(s) | 1236 |
| PciSI | GCTCTTC | 1 cut(s) | 2581 |
| PcsI | WCGNNNNNNNCGW | 1 cut(s) | 78 |
| PdmI | GAANNNNTTC | 2 cut(s) | 1396, 2849 |
| PfeI | GAWTC | 9 cut(s) | 668, 896, 1535, 1598, 1877, 1889, 2015, 2513, 2633 |
| PflFI | GACNNNGTC | 1 cut(s) | 411 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 1333 |
| PfoI | TCCNGGA | 2 cut(s) | 30, 1603 |
| PleI | GAGTC | 4 cut(s) | 612, 1198, 2063, 2342 |
| PmaCI | CACGTG | 1 cut(s) | 1028 |
| PmlI | CACGTG | 1 cut(s) | 1028 |
| PpsI | GAGTC | 4 cut(s) | 612, 1198, 2063, 2342 |
| Ppu21I | YACGTR | 1 cut(s) | 1028 |
| PpuMI | RGGWCCY | 1 cut(s) | 34 |
| PscI | ACATGT | 1 cut(s) | 1236 |
| PshBI | ATTAAT | 3 cut(s) | 513, 828, 3149 |
| PsiI | TTATAA | 1 cut(s) | 3002 |
| Psp124BI | GAGCTC | 2 cut(s) | 1103, 1456 |
| Psp5II | RGGWCCY | 1 cut(s) | 34 |
| Psp6I | CCWGG | 2 cut(s) | 1447, 1603 |
| PspCI | CACGTG | 1 cut(s) | 1028 |
| PspFI | CCCAGC | 1 cut(s) | 348 |
| PspGI | CCWGG | 2 cut(s) | 1447, 1603 |
| PspN4I | GGNNCC | 8 cut(s) | 35, 918, 1151, 2317, 2490, 2500, 2626, 2766 |
| PspOMI | GGGCCC | 1 cut(s) | 916 |
| PspPI | GGNCC | 8 cut(s) | 34, 413, 916, 917, 1324, 1347, 2456, 3061 |
| PspPPI | RGGWCCY | 1 cut(s) | 34 |
| PstI | CTGCAG | 4 cut(s) | 211, 667, 1021, 3172 |
| PstNI | CAGNNNCTG | 2 cut(s) | 671, 694 |
| PsuI | RGATCY | 8 cut(s) | 376, 505, 958, 1057, 1183, 1760, 2315, 3220 |
| PsyI | GACNNNGTC | 1 cut(s) | 411 |
| RsaI | GTAC | 5 cut(s) | 241, 888, 1549, 1785, 2192 |
| RsaNI | GTAC | 5 cut(s) | 240, 887, 1548, 1784, 2191 |
| SacI | GAGCTC | 2 cut(s) | 1103, 1456 |
| SapI | GCTCTTC | 1 cut(s) | 2581 |
| Sau96I | GGNCC | 8 cut(s) | 34, 413, 916, 917, 1324, 1347, 2456, 3061 |
| ScaI | AGTACT | 2 cut(s) | 241, 1549 |
| SchI | GAGTC | 4 cut(s) | 612, 1198, 2063, 2342 |
| ScrFI | CCNGG | 3 cut(s) | 32, 1449, 1605 |
| SduI | GDGCHC | 7 cut(s) | 8, 27, 678, 746, 920, 1103, 1456 |
| SfcI | CTRYAG | 9 cut(s) | 207, 333, 663, 1017, 2493, 2754, 2873, 3072, 3168 |
| SfuI | TTCGAA | 2 cut(s) | 923, 1230 |
| SinI | GGWCC | 3 cut(s) | 34, 413, 1324 |
| SmlI | CTYRAG | 2 cut(s) | 1067, 1206 |
| SmoI | CTYRAG | 2 cut(s) | 1067, 1206 |
| SpeI | ACTAGT | 1 cut(s) | 278 |
| SsiI | CCGC | 6 cut(s) | 58, 544, 884, 1444, 1519, 2842 |
| SspI | AATATT | 3 cut(s) | 1870, 2056, 2997 |
| SstI | GAGCTC | 2 cut(s) | 1103, 1456 |
| StyD4I | CCNGG | 3 cut(s) | 30, 1447, 1603 |
| StyI | CCWWGG | 3 cut(s) | 231, 818, 3216 |
| TaaI | ACNGT | 5 cut(s) | 1321, 1583, 1922, 2308, 2397 |
| TaiI | ACGT | 2 cut(s) | 1030, 3130 |
| TaqI | TCGA | 6 cut(s) | 901, 923, 1230, 1283, 2898, 3124 |
| TaqII | GACCGA | 1 cut(s) | 3170 |
| TatI | WGTACW | 3 cut(s) | 239, 1547, 2190 |
| TfiI | GAWTC | 9 cut(s) | 668, 896, 1535, 1598, 1877, 1889, 2015, 2513, 2633 |
| TscAI | CASTG | 8 cut(s) | 746, 1068, 1326, 1588, 1927, 2016, 2400, 2635 |
| TseFI | GTSAC | 5 cut(s) | 370, 1030, 2066, 2461, 2616 |
| Tsp45I | GTSAC | 5 cut(s) | 370, 1030, 2066, 2461, 2616 |
| TspGWI | ACGGA | 4 cut(s) | 743, 1162, 2120, 2460 |
| TspRI | CASTG | 8 cut(s) | 746, 1068, 1326, 1588, 1927, 2016, 2400, 2635 |
| Tth111I | GACNNNGTC | 1 cut(s) | 411 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 1333 |
| Vha464I | CTTAAG | 1 cut(s) | 1067 |
| VpaK11BI | GGWCC | 3 cut(s) | 34, 413, 1324 |
| VspI | ATTAAT | 3 cut(s) | 513, 828, 3149 |
| XagI | CCTNNNNNAGG | 2 cut(s) | 41, 2482 |
| XbaI | TCTAGA | 1 cut(s) | 1763 |
| XceI | RCATGY | 2 cut(s) | 1240, 1519 |
| XmnI | GAANNNNTTC | 2 cut(s) | 1396, 2849 |
| ZrmI | AGTACT | 2 cut(s) | 241, 1549 |
| Zsp2I | ATGCAT | 1 cut(s) | 2662 |