PXA domain
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| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT1G15240 AT1G15240 AT1G15240 AT1G15240 AT1G15240 |
| fragaria_vesca | FvH4_6g31500 FvH4_6g31500 FvH4_6g31500 FvH4_6g31500 FvH4_6g31500 FvH4_6g31500 FvH4_6g31500 |
| malus_domestica | MD09G1210500.v1.1 MD17G1193500.v1.1 |
| prunus_persica | Prupe.3G068900_v2.0.a1 Prupe.3G068900_v2.0.a1 Prupe.3G068900_v2.0.a1 |
| pyrus_communis | pycom09g12810 pycom17g19950 |
| rosa_chinensis | RchiOBHm_Chr2g0138361 |
| rosa_laevigata | RLG00000019739 |
| rosa_multiflora | Rmu_sc0002475.1_g000001 |
| rosa_roxburghii | Rroxscaffold_2G00106300 |
| rosa_rugosa | Rorug02G0351700 |
| rosa_samantha | Rh2AG400000 Rh2BG408400 Rh2CG386200 Rh2DG419700 |
| rosa_wichuraiana | Rw2G032540 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 1 cut(s) | 1850 |
| AarI | CACCTGC | 1 cut(s) | 2026 |
| Acc16I | TGCGCA | 1 cut(s) | 1781 |
| Acc36I | ACCTGC | 1 cut(s) | 2026 |
| Acc65I | GGTACC | 1 cut(s) | 1612 |
| AccB1I | GGYRCC | 1 cut(s) | 1612 |
| AccBSI | CCGCTC | 1 cut(s) | 45 |
| AccII | CGCG | 1 cut(s) | 1980 |
| AccIII | TCCGGA | 1 cut(s) | 2155 |
| AciI | CCGC | 1 cut(s) | 43 |
| AclWI | GGATC | 5 cut(s) | 1174, 1316, 1691, 1814, 2079 |
| AcoI | YGGCCR | 1 cut(s) | 1707 |
| AcuI | CTGAAG | 2 cut(s) | 1400, 2072 |
| AcyI | GRCGYC | 1 cut(s) | 1021 |
| AfaI | GTAC | 3 cut(s) | 403, 1043, 1614 |
| AfiI | CCNNNNNNNGG | 1 cut(s) | 1963 |
| AflIII | ACRYGT | 2 cut(s) | 126, 369 |
| AjnI | CCWGG | 2 cut(s) | 1425, 1438 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 1684, 1716 |
| AluBI | AGCT | 8 cut(s) | 308, 669, 1012, 1150, 1666, 1697, 1726, 2134 |
| AluI | AGCT | 8 cut(s) | 308, 669, 1012, 1150, 1666, 1697, 1726, 2134 |
| Alw21I | GWGCWC | 1 cut(s) | 310 |
| Alw26I | GTCTC | 2 cut(s) | 422, 2039 |
| AlwI | GGATC | 5 cut(s) | 1174, 1316, 1691, 1814, 2079 |
| Ama87I | CYCGRG | 2 cut(s) | 46, 330 |
| Aor13HI | TCCGGA | 1 cut(s) | 2155 |
| AoxI | GGCC | 3 cut(s) | 230, 1707, 1832 |
| ApeKI | GCWGC | 5 cut(s) | 782, 1147, 2021, 2134, 2137 |
| AseI | ATTAAT | 1 cut(s) | 1467 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 1569 |
| Asp718I | GGTACC | 1 cut(s) | 1612 |
| AspA2I | CCTAGG | 1 cut(s) | 227 |
| AspLEI | GCGC | 3 cut(s) | 1782, 1982, 2221 |
| AspS9I | GGNCC | 3 cut(s) | 231, 620, 1954 |
| AsuHPI | GGTGA | 6 cut(s) | 176, 509, 1327, 1748, 1896, 1929 |
| AvaI | CYCGRG | 2 cut(s) | 46, 330 |
| AvaII | GGWCC | 2 cut(s) | 620, 1954 |
| AvrII | CCTAGG | 1 cut(s) | 227 |
| AxyI | CCTNAGG | 1 cut(s) | 1908 |
| BalI | TGGCCA | 1 cut(s) | 1709 |
| BanI | GGYRCC | 1 cut(s) | 1612 |
| BanII | GRGCYC | 1 cut(s) | 310 |
| Bbv12I | GWGCWC | 1 cut(s) | 310 |
| BbvI | GCAGC | 5 cut(s) | 794, 1159, 2008, 2121, 2124 |
| BceAI | ACGGC | 3 cut(s) | 920, 1079, 2163 |
| BciT130I | CCWGG | 2 cut(s) | 1427, 1440 |
| BcoDI | GTCTC | 2 cut(s) | 422, 2039 |
| BfaI | CTAG | 9 cut(s) | 15, 228, 303, 735, 857, 1262, 1491, 1727, 1941 |
| BfmI | CTRYAG | 3 cut(s) | 1602, 1721, 1923 |
| BfuAI | ACCTGC | 1 cut(s) | 2026 |
| BglI | GCCNNNNNGGC | 1 cut(s) | 646 |
| BglII | AGATCT | 2 cut(s) | 73, 614 |
| BisI | GCNGC | 5 cut(s) | 783, 1148, 2022, 2135, 2138 |
| BlnI | CCTAGG | 1 cut(s) | 227 |
| BlsI | GCNGC | 5 cut(s) | 784, 1149, 2023, 2136, 2139 |
| BmcAI | AGTACT | 1 cut(s) | 403 |
| Bme1390I | CCNGG | 2 cut(s) | 1427, 1440 |
| Bme18I | GGWCC | 2 cut(s) | 620, 1954 |
| BmeT110I | CYCGRG | 2 cut(s) | 46, 330 |
| BmgT120I | GGNCC | 3 cut(s) | 231, 620, 1954 |
| BmiI | GGNNCC | 1 cut(s) | 1614 |
| BmrFI | CCNGG | 2 cut(s) | 1427, 1440 |
| BmrI | ACTGGG | 1 cut(s) | 592 |
| BmsI | GCATC | 5 cut(s) | 706, 1477, 1729, 1867, 2206 |
| BmuI | ACTGGG | 1 cut(s) | 592 |
| BpmI | CTGGAG | 1 cut(s) | 699 |
| Bpu10I | CCTNAGC | 1 cut(s) | 2067 |
| BpuEI | CTTGAG | 2 cut(s) | 81, 2150 |
| Bsa29I | ATCGAT | 2 cut(s) | 1169, 2200 |
| BsaAI | YACGTR | 1 cut(s) | 2170 |
| BsaBI | GATNNNNATC | 1 cut(s) | 1114 |
| BsaHI | GRCGYC | 1 cut(s) | 1021 |
| BsaI | GGTCTC | 1 cut(s) | 2039 |
| BsaJI | CCNNGG | 2 cut(s) | 227, 1425 |
| BsaWI | WCCGGW | 1 cut(s) | 2155 |
| Bsc4I | CCNNNNNNNGG | 1 cut(s) | 1963 |
| Bse1I | ACTGG | 5 cut(s) | 562, 598, 1084, 1757, 2118 |
| Bse21I | CCTNAGG | 1 cut(s) | 1908 |
| Bse3DI | GCAATG | 1 cut(s) | 25 |
| Bse8I | GATNNNNATC | 1 cut(s) | 1114 |
| BseAI | TCCGGA | 1 cut(s) | 2155 |
| BseBI | CCWGG | 2 cut(s) | 1427, 1440 |
| BseCI | ATCGAT | 2 cut(s) | 1169, 2200 |
| BseDI | CCNNGG | 2 cut(s) | 227, 1425 |
| BseGI | GGATG | 7 cut(s) | 355, 481, 964, 1312, 1685, 1737, 1858 |
| BseJI | GATNNNNATC | 1 cut(s) | 1114 |
| BseLI | CCNNNNNNNGG | 1 cut(s) | 1963 |
| BseMI | GCAATG | 1 cut(s) | 25 |
| BseMII | CTCAG | 2 cut(s) | 1029, 1922 |
| BseNI | ACTGG | 5 cut(s) | 562, 598, 1084, 1757, 2118 |
| BseRI | GAGGAG | 2 cut(s) | 66, 1022 |
| BseXI | GCAGC | 5 cut(s) | 794, 1159, 2008, 2121, 2124 |
| Bsh1236I | CGCG | 1 cut(s) | 1980 |
| BshFI | GGCC | 3 cut(s) | 232, 1709, 1834 |
| BshNI | GGYRCC | 1 cut(s) | 1612 |
| BshVI | ATCGAT | 2 cut(s) | 1169, 2200 |
| BsiHKAI | GWGCWC | 1 cut(s) | 310 |
| BsiHKCI | CYCGRG | 2 cut(s) | 46, 330 |
| BsiSI | CCGG | 1 cut(s) | 2156 |
| BslFI | GGGAC | 2 cut(s) | 1199, 1574 |
| BslI | CCNNNNNNNGG | 1 cut(s) | 1963 |
| BsmAI | GTCTC | 2 cut(s) | 422, 2039 |
| BsmFI | GGGAC | 2 cut(s) | 1199, 1574 |
| BsmI | GAATGC | 1 cut(s) | 178 |
| BsnI | GGCC | 3 cut(s) | 232, 1709, 1834 |
| Bso31I | GGTCTC | 1 cut(s) | 2039 |
| BsoBI | CYCGRG | 2 cut(s) | 46, 330 |
| Bsp1286I | GDGCHC | 1 cut(s) | 310 |
| Bsp13I | TCCGGA | 1 cut(s) | 2155 |
| Bsp143I | GATC | 9 cut(s) | 73, 614, 1166, 1170, 1321, 1683, 1806, 1972, 2071 |
| BspACI | CCGC | 1 cut(s) | 43 |
| BspANI | GGCC | 3 cut(s) | 232, 1709, 1834 |
| BspCNI | CTCAG | 2 cut(s) | 1030, 1921 |
| BspDI | ATCGAT | 2 cut(s) | 1169, 2200 |
| BspEI | TCCGGA | 1 cut(s) | 2155 |
| BspFNI | CGCG | 1 cut(s) | 1980 |
| BspLI | GGNNCC | 1 cut(s) | 1614 |
| BspMI | ACCTGC | 1 cut(s) | 2026 |
| BspPI | GGATC | 5 cut(s) | 1174, 1316, 1691, 1814, 2079 |
| BspT107I | GGYRCC | 1 cut(s) | 1612 |
| BspTNI | GGTCTC | 1 cut(s) | 2039 |
| BsrBI | CCGCTC | 1 cut(s) | 45 |
| BsrDI | GCAATG | 1 cut(s) | 25 |
| BsrI | ACTGG | 5 cut(s) | 562, 598, 1084, 1757, 2118 |
| BssECI | CCNNGG | 2 cut(s) | 227, 1425 |
| BssMI | GATC | 9 cut(s) | 73, 614, 1166, 1170, 1321, 1683, 1806, 1972, 2071 |
| BssNI | GRCGYC | 1 cut(s) | 1021 |
| BssT1I | CCWWGG | 1 cut(s) | 227 |
| Bst2UI | CCWGG | 2 cut(s) | 1427, 1440 |
| Bst4CI | ACNGT | 5 cut(s) | 205, 437, 776, 1251, 1588 |
| Bst6I | CTCTTC | 3 cut(s) | 420, 908, 1540 |
| BstACI | GRCGYC | 1 cut(s) | 1021 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 2021 |
| BstBAI | YACGTR | 1 cut(s) | 2170 |
| BstDEI | CTNAG | 5 cut(s) | 255, 1038, 1193, 1908, 2067 |
| BstF5I | GGATG | 7 cut(s) | 355, 481, 964, 1312, 1685, 1737, 1858 |
| BstFNI | CGCG | 1 cut(s) | 1980 |
| BstHHI | GCGC | 3 cut(s) | 1782, 1982, 2221 |
| BstKTI | GATC | 9 cut(s) | 76, 617, 1169, 1173, 1324, 1686, 1809, 1975, 2074 |
| BstMAI | GTCTC | 2 cut(s) | 422, 2039 |
| BstMBI | GATC | 9 cut(s) | 73, 614, 1166, 1170, 1321, 1683, 1806, 1972, 2071 |
| BstMWI | GCNNNNNNNGC | 5 cut(s) | 646, 1018, 1063, 1819, 2021 |
| BstNI | CCWGG | 2 cut(s) | 1427, 1440 |
| BstNSI | RCATGY | 2 cut(s) | 130, 373 |
| BstSCI | CCNGG | 2 cut(s) | 1425, 1438 |
| BstSFI | CTRYAG | 3 cut(s) | 1602, 1721, 1923 |
| BstSNI | TACGTA | 1 cut(s) | 2170 |
| BstUI | CGCG | 1 cut(s) | 1980 |
| BstV1I | GCAGC | 5 cut(s) | 794, 1159, 2008, 2121, 2124 |
| BstX2I | RGATCY | 3 cut(s) | 73, 614, 2071 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 1676 |
| BstYI | RGATCY | 3 cut(s) | 73, 614, 2071 |
| Bsu15I | ATCGAT | 2 cut(s) | 1169, 2200 |
| Bsu36I | CCTNAGG | 1 cut(s) | 1908 |
| BsuRI | GGCC | 3 cut(s) | 232, 1709, 1834 |
| BsuTUI | ATCGAT | 2 cut(s) | 1169, 2200 |
| BtgZI | GCGATG | 1 cut(s) | 753 |
| BtsCI | GGATG | 7 cut(s) | 355, 481, 964, 1312, 1685, 1737, 1858 |
| BtsI | GCAGTG | 1 cut(s) | 867 |
| BtsIMutI | CAGTG | 5 cut(s) | 442, 781, 867, 1247, 1476 |
| BveI | ACCTGC | 1 cut(s) | 2026 |
| CfoI | GCGC | 3 cut(s) | 1782, 1982, 2221 |
| Cfr13I | GGNCC | 3 cut(s) | 231, 620, 1954 |
| ClaI | ATCGAT | 2 cut(s) | 1169, 2200 |
| CseI | GACGC | 2 cut(s) | 1010, 1986 |
| Csp6I | GTAC | 3 cut(s) | 402, 1042, 1613 |
| CviAII | CATG | 3 cut(s) | 127, 370, 2186 |
| CviQI | GTAC | 3 cut(s) | 402, 1042, 1613 |
| DdeI | CTNAG | 5 cut(s) | 255, 1038, 1193, 1908, 2067 |
| DpnI | GATC | 9 cut(s) | 75, 616, 1168, 1172, 1323, 1685, 1808, 1974, 2073 |
| DpnII | GATC | 9 cut(s) | 73, 614, 1166, 1170, 1321, 1683, 1806, 1972, 2071 |
| DraI | TTTAAA | 1 cut(s) | 2215 |
| EaeI | YGGCCR | 1 cut(s) | 1707 |
| Eam1104I | CTCTTC | 3 cut(s) | 420, 908, 1540 |
| EarI | CTCTTC | 3 cut(s) | 420, 908, 1540 |
| Ecl136II | GAGCTC | 1 cut(s) | 308 |
| Eco105I | TACGTA | 1 cut(s) | 2170 |
| Eco130I | CCWWGG | 1 cut(s) | 227 |
| Eco24I | GRGCYC | 1 cut(s) | 310 |
| Eco31I | GGTCTC | 1 cut(s) | 2039 |
| Eco47I | GGWCC | 2 cut(s) | 620, 1954 |
| Eco53kI | GAGCTC | 1 cut(s) | 308 |
| Eco57I | CTGAAG | 2 cut(s) | 1400, 2072 |
| Eco81I | CCTNAGG | 1 cut(s) | 1908 |
| Eco88I | CYCGRG | 2 cut(s) | 46, 330 |
| EcoICRI | GAGCTC | 1 cut(s) | 308 |
| EcoRII | CCWGG | 2 cut(s) | 1425, 1438 |
| EcoT14I | CCWWGG | 1 cut(s) | 227 |
| EcoT38I | GRGCYC | 1 cut(s) | 310 |
| ErhI | CCWWGG | 1 cut(s) | 227 |
| FaeI | CATG | 3 cut(s) | 130, 373, 2189 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 555, 587 |
| FaqI | GGGAC | 2 cut(s) | 1199, 1574 |
| FatI | CATG | 3 cut(s) | 126, 369, 2185 |
| Fnu4HI | GCNGC | 5 cut(s) | 783, 1148, 2022, 2135, 2138 |
| FokI | GGATG | 7 cut(s) | 362, 488, 971, 1319, 1692, 1744, 1845 |
| FriOI | GRGCYC | 1 cut(s) | 310 |
| Fsp4HI | GCNGC | 5 cut(s) | 783, 1148, 2022, 2135, 2138 |
| FspBI | CTAG | 9 cut(s) | 15, 228, 303, 735, 857, 1262, 1491, 1727, 1941 |
| FspI | TGCGCA | 1 cut(s) | 1781 |
| GlaI | GCGC | 3 cut(s) | 1781, 1981, 2220 |
| GluI | GCNGC | 5 cut(s) | 783, 1148, 2022, 2135, 2138 |
| GsuI | CTGGAG | 1 cut(s) | 699 |
| HaeIII | GGCC | 3 cut(s) | 232, 1709, 1834 |
| HapII | CCGG | 1 cut(s) | 2156 |
| HgaI | GACGC | 2 cut(s) | 1010, 1986 |
| HhaI | GCGC | 3 cut(s) | 1782, 1982, 2221 |
| Hin1I | GRCGYC | 1 cut(s) | 1021 |
| Hin1II | CATG | 3 cut(s) | 130, 373, 2189 |
| Hin6I | GCGC | 3 cut(s) | 1780, 1980, 2219 |
| HinP1I | GCGC | 3 cut(s) | 1780, 1980, 2219 |
| HincII | GTYRAC | 3 cut(s) | 1077, 1201, 1258 |
| HindII | GTYRAC | 3 cut(s) | 1077, 1201, 1258 |
| HindIII | AAGCTT | 2 cut(s) | 667, 1695 |
| HpaII | CCGG | 1 cut(s) | 2156 |
| HphI | GGTGA | 6 cut(s) | 176, 509, 1327, 1748, 1896, 1929 |
| Hpy166II | GTNNAC | 5 cut(s) | 940, 1077, 1201, 1258, 1405 |
| Hpy8I | GTNNAC | 5 cut(s) | 940, 1077, 1201, 1258, 1405 |
| Hpy99I | CGWCG | 1 cut(s) | 1980 |
| HpyAV | CCTTC | 4 cut(s) | 155, 984, 1753, 2135 |
| HpyCH4III | ACNGT | 5 cut(s) | 205, 437, 776, 1251, 1588 |
| HpyCH4IV | ACGT | 2 cut(s) | 750, 2169 |
| HpyCH4V | TGCA | 7 cut(s) | 719, 800, 815, 902, 1147, 2015, 2185 |
| HpyF10VI | GCNNNNNNNGC | 5 cut(s) | 646, 1018, 1063, 1819, 2021 |
| HpyF3I | CTNAG | 5 cut(s) | 255, 1038, 1193, 1908, 2067 |
| HpySE526I | ACGT | 2 cut(s) | 750, 2169 |
| Hsp92I | GRCGYC | 1 cut(s) | 1021 |
| Hsp92II | CATG | 3 cut(s) | 130, 373, 2189 |
| HspAI | GCGC | 3 cut(s) | 1780, 1980, 2219 |
| Kpn2I | TCCGGA | 1 cut(s) | 2155 |
| KpnI | GGTACC | 1 cut(s) | 1616 |
| Kzo9I | GATC | 9 cut(s) | 73, 614, 1166, 1170, 1321, 1683, 1806, 1972, 2071 |
| LmnI | GCTCC | 2 cut(s) | 1009, 1671 |
| Lsp1109I | GCAGC | 5 cut(s) | 794, 1159, 2008, 2121, 2124 |
| LweI | GCATC | 5 cut(s) | 706, 1477, 1729, 1867, 2206 |
| MaeI | CTAG | 9 cut(s) | 15, 228, 303, 735, 857, 1262, 1491, 1727, 1941 |
| MaeII | ACGT | 2 cut(s) | 750, 2169 |
| MaeIII | GTNAC | 9 cut(s) | 81, 199, 323, 439, 821, 952, 1315, 1458, 1516 |
| MalI | GATC | 9 cut(s) | 75, 616, 1168, 1172, 1323, 1685, 1808, 1974, 2073 |
| MbiI | CCGCTC | 1 cut(s) | 45 |
| MboI | GATC | 9 cut(s) | 73, 614, 1166, 1170, 1321, 1683, 1806, 1972, 2071 |
| MflI | RGATCY | 3 cut(s) | 73, 614, 2071 |
| MhlI | GDGCHC | 1 cut(s) | 310 |
| MlsI | TGGCCA | 1 cut(s) | 1709 |
| MluNI | TGGCCA | 1 cut(s) | 1709 |
| MlyI | GAGTC | 3 cut(s) | 88, 725, 1196 |
| MmeI | TCCRAC | 1 cut(s) | 357 |
| Mox20I | TGGCCA | 1 cut(s) | 1709 |
| MroI | TCCGGA | 1 cut(s) | 2155 |
| MroXI | GAANNNNTTC | 1 cut(s) | 1569 |
| MscI | TGGCCA | 1 cut(s) | 1709 |
| Msp20I | TGGCCA | 1 cut(s) | 1709 |
| MspI | CCGG | 1 cut(s) | 2156 |
| MspR9I | CCNGG | 2 cut(s) | 1427, 1440 |
| Mva1269I | GAATGC | 1 cut(s) | 178 |
| MvaI | CCWGG | 2 cut(s) | 1427, 1440 |
| MvnI | CGCG | 1 cut(s) | 1980 |
| MwoI | GCNNNNNNNGC | 5 cut(s) | 646, 1018, 1063, 1819, 2021 |
| NdeII | GATC | 9 cut(s) | 73, 614, 1166, 1170, 1321, 1683, 1806, 1972, 2071 |
| NlaIII | CATG | 3 cut(s) | 130, 373, 2189 |
| NlaIV | GGNNCC | 1 cut(s) | 1614 |
| NmuCI | GTSAC | 5 cut(s) | 81, 821, 1315, 1458, 1516 |
| NsbI | TGCGCA | 1 cut(s) | 1781 |
| NspI | RCATGY | 2 cut(s) | 130, 373 |
| PaeR7I | CTCGAG | 1 cut(s) | 330 |
| PaqCI | CACCTGC | 1 cut(s) | 2026 |
| PciI | ACATGT | 2 cut(s) | 126, 369 |
| PctI | GAATGC | 1 cut(s) | 178 |
| PdmI | GAANNNNTTC | 1 cut(s) | 1569 |
| PfeI | GAWTC | 8 cut(s) | 389, 452, 568, 743, 866, 1481, 1559, 1565 |
| PkrI | GCNGC | 5 cut(s) | 784, 1149, 2023, 2136, 2139 |
| PleI | GAGTC | 3 cut(s) | 88, 725, 1196 |
| PpsI | GAGTC | 3 cut(s) | 88, 725, 1196 |
| Ppu21I | YACGTR | 1 cut(s) | 2170 |
| PscI | ACATGT | 2 cut(s) | 126, 369 |
| PshBI | ATTAAT | 1 cut(s) | 1467 |
| PsiI | TTATAA | 1 cut(s) | 1850 |
| Psp124BI | GAGCTC | 1 cut(s) | 310 |
| Psp6I | CCWGG | 2 cut(s) | 1425, 1438 |
| PspGI | CCWGG | 2 cut(s) | 1425, 1438 |
| PspN4I | GGNNCC | 1 cut(s) | 1614 |
| PspPI | GGNCC | 3 cut(s) | 231, 620, 1954 |
| PsuI | RGATCY | 3 cut(s) | 73, 614, 2071 |
| RsaI | GTAC | 3 cut(s) | 403, 1043, 1614 |
| RsaNI | GTAC | 3 cut(s) | 402, 1042, 1613 |
| SacI | GAGCTC | 1 cut(s) | 310 |
| SatI | GCNGC | 5 cut(s) | 783, 1148, 2022, 2135, 2138 |
| Sau3AI | GATC | 9 cut(s) | 73, 614, 1166, 1170, 1321, 1683, 1806, 1972, 2071 |
| Sau96I | GGNCC | 3 cut(s) | 231, 620, 1954 |
| ScaI | AGTACT | 1 cut(s) | 403 |
| SchI | GAGTC | 3 cut(s) | 88, 725, 1196 |
| ScrFI | CCNGG | 2 cut(s) | 1427, 1440 |
| SduI | GDGCHC | 1 cut(s) | 310 |
| SfaNI | GCATC | 5 cut(s) | 706, 1477, 1729, 1867, 2206 |
| SfcI | CTRYAG | 3 cut(s) | 1602, 1721, 1923 |
| Sfr274I | CTCGAG | 1 cut(s) | 330 |
| SinI | GGWCC | 2 cut(s) | 620, 1954 |
| SlaI | CTCGAG | 1 cut(s) | 330 |
| SmlI | CTYRAG | 3 cut(s) | 96, 330, 2129 |
| SmoI | CTYRAG | 3 cut(s) | 96, 330, 2129 |
| SnaBI | TACGTA | 1 cut(s) | 2170 |
| SsiI | CCGC | 1 cut(s) | 43 |
| SspI | AATATT | 3 cut(s) | 724, 907, 1845 |
| SspMI | CTAG | 9 cut(s) | 15, 228, 303, 735, 857, 1262, 1491, 1727, 1941 |
| SstI | GAGCTC | 1 cut(s) | 310 |
| StyD4I | CCNGG | 2 cut(s) | 1425, 1438 |
| StyI | CCWWGG | 1 cut(s) | 227 |
| TaaI | ACNGT | 5 cut(s) | 205, 437, 776, 1251, 1588 |
| TaiI | ACGT | 2 cut(s) | 753, 2172 |
| TaqI | TCGA | 7 cut(s) | 331, 712, 1169, 1242, 1746, 1975, 2200 |
| TaqII | GACCGA | 1 cut(s) | 2021 |
| TatI | WGTACW | 2 cut(s) | 401, 1041 |
| TfiI | GAWTC | 8 cut(s) | 389, 452, 568, 743, 866, 1481, 1559, 1565 |
| TscAI | CASTG | 5 cut(s) | 442, 781, 867, 1254, 1483 |
| TseFI | GTSAC | 5 cut(s) | 81, 821, 1315, 1458, 1516 |
| TseI | GCWGC | 5 cut(s) | 782, 1147, 2021, 2134, 2137 |
| Tsp45I | GTSAC | 5 cut(s) | 81, 821, 1315, 1458, 1516 |
| TspGWI | ACGGA | 2 cut(s) | 971, 1314 |
| TspRI | CASTG | 5 cut(s) | 442, 781, 867, 1254, 1483 |
| VpaK11BI | GGWCC | 2 cut(s) | 620, 1954 |
| VspI | ATTAAT | 1 cut(s) | 1467 |
| XceI | RCATGY | 2 cut(s) | 130, 373 |
| XcmI | CCANNNNNNNNNTGG | 2 cut(s) | 614, 1642 |
| XhoI | CTCGAG | 1 cut(s) | 330 |
| XmaJI | CCTAGG | 1 cut(s) | 227 |
| XmnI | GAANNNNTTC | 1 cut(s) | 1569 |
| XspI | CTAG | 9 cut(s) | 15, 228, 303, 735, 857, 1262, 1491, 1727, 1941 |
| ZrmI | AGTACT | 1 cut(s) | 403 |