Alpha/beta hydrolase family
Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.
| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT1G15490 AT1G15490 AT1G15490 AT1G15490 AT1G80280 |
| fragaria_vesca | FvH4_6g30590 |
| malus_domestica | MD09G1218700.v1.1 MD17G1202000.v1.1 |
| prunus_persica | Prupe.3G077700_v2.0.a1 Prupe.3G077700_v2.0.a1 |
| pyrus_communis | pycom17g20630 pycom17g20640 |
| rosa_chinensis | RchiOBHm_Chr2g0137001 |
| rosa_laevigata | RLG00000019594 |
| rosa_multiflora | Rmu_sc0001374.1_g000058 |
| rosa_roxburghii | Rroxscaffold_2G00107780 |
| rosa_rugosa | Rorug02G0337000 Rorug02G0337100 |
| rosa_samantha | Rh2AG386000 Rh2BG392900 Rh2CG373400 Rh2DG409100 |
| rosa_wichuraiana | Rw2G031590 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 2 cut(s) | 1278, 1623 |
| Acc36I | ACCTGC | 1 cut(s) | 1308 |
| AccB1I | GGYRCC | 2 cut(s) | 130, 1474 |
| AccB7I | CCANNNNNTGG | 2 cut(s) | 314, 1804 |
| AccIII | TCCGGA | 2 cut(s) | 565, 1844 |
| AclI | AACGTT | 1 cut(s) | 1422 |
| AclWI | GGATC | 1 cut(s) | 557 |
| AcoI | YGGCCR | 2 cut(s) | 1096, 1852 |
| AcsI | RAATTY | 4 cut(s) | 385, 1060, 1411, 1822 |
| AcuI | CTGAAG | 3 cut(s) | 423, 1020, 1745 |
| AcvI | CACGTG | 1 cut(s) | 159 |
| AcyI | GRCGYC | 1 cut(s) | 77 |
| AfaI | GTAC | 4 cut(s) | 45, 960, 1054, 1398 |
| AfiI | CCNNNNNNNGG | 8 cut(s) | 314, 423, 638, 1173, 1216, 1217, 1624, 1804 |
| AflII | CTTAAG | 1 cut(s) | 1909 |
| AgsI | TTSAA | 8 cut(s) | 181, 208, 360, 442, 830, 1286, 1420, 1736 |
| AhlI | ACTAGT | 1 cut(s) | 1831 |
| AjiI | CACGTC | 1 cut(s) | 750 |
| AjnI | CCWGG | 4 cut(s) | 787, 1210, 1524, 1577 |
| Alw21I | GWGCWC | 1 cut(s) | 215 |
| Alw26I | GTCTC | 5 cut(s) | 241, 346, 1012, 1682, 1786 |
| AlwI | GGATC | 1 cut(s) | 557 |
| AlwNI | CAGNNNCTG | 2 cut(s) | 1196, 1766 |
| Ama87I | CYCGRG | 1 cut(s) | 693 |
| Aor13HI | TCCGGA | 2 cut(s) | 565, 1844 |
| AoxI | GGCC | 8 cut(s) | 286, 860, 901, 1096, 1219, 1366, 1626, 1852 |
| ApeKI | GCWGC | 6 cut(s) | 82, 97, 1196, 1234, 1385, 1892 |
| ApoI | RAATTY | 4 cut(s) | 385, 1060, 1411, 1822 |
| Asp700I | GAANNNNTTC | 2 cut(s) | 1005, 1415 |
| AspLEI | GCGC | 1 cut(s) | 1766 |
| AspS9I | GGNCC | 7 cut(s) | 287, 305, 613, 1067, 1164, 1219, 1627 |
| AsuHPI | GGTGA | 5 cut(s) | 211, 545, 713, 786, 1692 |
| AvaI | CYCGRG | 1 cut(s) | 693 |
| AvaII | GGWCC | 4 cut(s) | 305, 613, 1067, 1164 |
| BalI | TGGCCA | 2 cut(s) | 1098, 1854 |
| BanI | GGYRCC | 2 cut(s) | 130, 1474 |
| BanII | GRGCYC | 1 cut(s) | 215 |
| BarI | GAAGNNNNNNTAC | 1 cut(s) | 31 |
| BbrPI | CACGTG | 1 cut(s) | 159 |
| BbsI | GAAGAC | 3 cut(s) | 405, 758, 1743 |
| Bbv12I | GWGCWC | 1 cut(s) | 215 |
| BbvCI | CCTCAGC | 1 cut(s) | 1767 |
| BbvI | GCAGC | 6 cut(s) | 69, 84, 1183, 1221, 1372, 1904 |
| BceAI | ACGGC | 1 cut(s) | 118 |
| BcgI | CGANNNNNNTGC | 6 cut(s) | 176, 210, 272, 306, 1511, 1545 |
| BciT130I | CCWGG | 4 cut(s) | 789, 1212, 1526, 1579 |
| BciVI | GTATCC | 1 cut(s) | 1485 |
| BcoDI | GTCTC | 5 cut(s) | 241, 346, 1012, 1682, 1786 |
| BcuI | ACTAGT | 1 cut(s) | 1831 |
| BfaI | CTAG | 3 cut(s) | 1640, 1827, 1832 |
| BfmI | CTRYAG | 1 cut(s) | 925 |
| BfoI | RGCGCY | 1 cut(s) | 1767 |
| BfrI | CTTAAG | 1 cut(s) | 1909 |
| BfuAI | ACCTGC | 1 cut(s) | 1308 |
| BfuI | GTATCC | 1 cut(s) | 1485 |
| BglII | AGATCT | 2 cut(s) | 248, 620 |
| BisI | GCNGC | 6 cut(s) | 83, 98, 1197, 1235, 1386, 1893 |
| BlpI | GCTNAGC | 1 cut(s) | 779 |
| BlsI | GCNGC | 6 cut(s) | 84, 99, 1198, 1236, 1387, 1894 |
| Bme1390I | CCNGG | 4 cut(s) | 789, 1212, 1526, 1579 |
| Bme18I | GGWCC | 4 cut(s) | 305, 613, 1067, 1164 |
| BmeT110I | CYCGRG | 1 cut(s) | 693 |
| BmgBI | CACGTC | 1 cut(s) | 750 |
| BmgT120I | GGNCC | 7 cut(s) | 287, 305, 613, 1067, 1164, 1219, 1627 |
| BmiI | GGNNCC | 7 cut(s) | 132, 615, 1165, 1166, 1220, 1476, 1629 |
| BmrFI | CCNGG | 4 cut(s) | 789, 1212, 1526, 1579 |
| BmrI | ACTGGG | 1 cut(s) | 704 |
| BmsI | GCATC | 5 cut(s) | 29, 202, 1412, 1576, 1762 |
| BmuI | ACTGGG | 1 cut(s) | 704 |
| BpiI | GAAGAC | 3 cut(s) | 405, 758, 1743 |
| Bpu10I | CCTNAGC | 1 cut(s) | 1767 |
| Bpu1102I | GCTNAGC | 1 cut(s) | 779 |
| BpuEI | CTTGAG | 4 cut(s) | 406, 1036, 1213, 1519 |
| Bsa29I | ATCGAT | 1 cut(s) | 196 |
| BsaAI | YACGTR | 1 cut(s) | 159 |
| BsaBI | GATNNNNATC | 1 cut(s) | 876 |
| BsaHI | GRCGYC | 1 cut(s) | 77 |
| BsaI | GGTCTC | 1 cut(s) | 241 |
| BsaJI | CCNNGG | 4 cut(s) | 313, 493, 1210, 1878 |
| BsaWI | WCCGGW | 3 cut(s) | 565, 1240, 1844 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 970, 1000 |
| Bsc4I | CCNNNNNNNGG | 8 cut(s) | 314, 423, 638, 1173, 1216, 1217, 1624, 1804 |
| Bse118I | RCCGGY | 1 cut(s) | 100 |
| Bse1I | ACTGG | 4 cut(s) | 710, 873, 1099, 1745 |
| Bse3DI | GCAATG | 1 cut(s) | 1902 |
| Bse8I | GATNNNNATC | 1 cut(s) | 876 |
| BseAI | TCCGGA | 2 cut(s) | 565, 1844 |
| BseBI | CCWGG | 4 cut(s) | 789, 1212, 1526, 1579 |
| BseCI | ATCGAT | 1 cut(s) | 196 |
| BseDI | CCNNGG | 4 cut(s) | 313, 493, 1210, 1878 |
| BseGI | GGATG | 8 cut(s) | 877, 976, 1048, 1612, 1652, 1657, 1777, 1853 |
| BseJI | GATNNNNATC | 1 cut(s) | 876 |
| BseLI | CCNNNNNNNGG | 8 cut(s) | 314, 423, 638, 1173, 1216, 1217, 1624, 1804 |
| BseMI | GCAATG | 1 cut(s) | 1902 |
| BseMII | CTCAG | 4 cut(s) | 1304, 1311, 1350, 1758 |
| BseNI | ACTGG | 4 cut(s) | 710, 873, 1099, 1745 |
| BseRI | GAGGAG | 1 cut(s) | 1149 |
| BseXI | GCAGC | 6 cut(s) | 69, 84, 1183, 1221, 1372, 1904 |
| BseYI | CCCAGC | 1 cut(s) | 833 |
| BsgI | GTGCAG | 2 cut(s) | 772, 1371 |
| Bsh1285I | CGRYCG | 1 cut(s) | 1241 |
| BshFI | GGCC | 8 cut(s) | 288, 862, 903, 1098, 1221, 1368, 1628, 1854 |
| BshNI | GGYRCC | 2 cut(s) | 130, 1474 |
| BshVI | ATCGAT | 1 cut(s) | 196 |
| BsiEI | CGRYCG | 1 cut(s) | 1241 |
| BsiHKAI | GWGCWC | 1 cut(s) | 215 |
| BsiHKCI | CYCGRG | 1 cut(s) | 693 |
| BsiSI | CCGG | 4 cut(s) | 101, 566, 1241, 1845 |
| BsiWI | CGTACG | 1 cut(s) | 43 |
| BslFI | GGGAC | 4 cut(s) | 134, 599, 1177, 1860 |
| BslI | CCNNNNNNNGG | 8 cut(s) | 314, 423, 638, 1173, 1216, 1217, 1624, 1804 |
| BsmAI | GTCTC | 5 cut(s) | 241, 346, 1012, 1682, 1786 |
| BsmFI | GGGAC | 4 cut(s) | 134, 599, 1177, 1860 |
| BsmI | GAATGC | 1 cut(s) | 462 |
| BsnI | GGCC | 8 cut(s) | 288, 862, 903, 1098, 1221, 1368, 1628, 1854 |
| Bso31I | GGTCTC | 1 cut(s) | 241 |
| BsoBI | CYCGRG | 1 cut(s) | 693 |
| Bsp1286I | GDGCHC | 1 cut(s) | 215 |
| Bsp13I | TCCGGA | 2 cut(s) | 565, 1844 |
| Bsp143I | GATC | 4 cut(s) | 248, 562, 620, 1204 |
| Bsp1720I | GCTNAGC | 1 cut(s) | 779 |
| BspANI | GGCC | 8 cut(s) | 288, 862, 903, 1098, 1221, 1368, 1628, 1854 |
| BspCNI | CTCAG | 4 cut(s) | 1303, 1312, 1349, 1759 |
| BspDI | ATCGAT | 1 cut(s) | 196 |
| BspEI | TCCGGA | 2 cut(s) | 565, 1844 |
| BspHI | TCATGA | 2 cut(s) | 744, 1354 |
| BspLI | GGNNCC | 7 cut(s) | 132, 615, 1165, 1166, 1220, 1476, 1629 |
| BspMI | ACCTGC | 1 cut(s) | 1308 |
| BspPI | GGATC | 1 cut(s) | 557 |
| BspT107I | GGYRCC | 2 cut(s) | 130, 1474 |
| BspTI | CTTAAG | 1 cut(s) | 1909 |
| BspTNI | GGTCTC | 1 cut(s) | 241 |
| BsrDI | GCAATG | 1 cut(s) | 1902 |
| BsrFI | RCCGGY | 1 cut(s) | 100 |
| BsrI | ACTGG | 4 cut(s) | 710, 873, 1099, 1745 |
| BssAI | RCCGGY | 1 cut(s) | 100 |
| BssECI | CCNNGG | 4 cut(s) | 313, 493, 1210, 1878 |
| BssMI | GATC | 4 cut(s) | 248, 562, 620, 1204 |
| BssNI | GRCGYC | 1 cut(s) | 77 |
| BssT1I | CCWWGG | 3 cut(s) | 313, 493, 1878 |
| Bst2UI | CCWGG | 4 cut(s) | 789, 1212, 1526, 1579 |
| Bst6I | CTCTTC | 3 cut(s) | 996, 1032, 1863 |
| BstACI | GRCGYC | 1 cut(s) | 77 |
| BstAFI | CTTAAG | 1 cut(s) | 1909 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 1889 |
| BstBAI | YACGTR | 1 cut(s) | 159 |
| BstC8I | GCNNGC | 6 cut(s) | 215, 785, 1033, 1479, 1575, 1762 |
| BstDEI | CTNAG | 6 cut(s) | 761, 779, 1290, 1320, 1336, 1767 |
| BstENI | CCTNNNNNAGG | 1 cut(s) | 1622 |
| BstF5I | GGATG | 8 cut(s) | 877, 976, 1048, 1612, 1652, 1657, 1777, 1853 |
| BstH2I | RGCGCY | 1 cut(s) | 1767 |
| BstHHI | GCGC | 1 cut(s) | 1766 |
| BstKTI | GATC | 4 cut(s) | 251, 565, 623, 1207 |
| BstMAI | GTCTC | 5 cut(s) | 241, 346, 1012, 1682, 1786 |
| BstMBI | GATC | 4 cut(s) | 248, 562, 620, 1204 |
| BstMCI | CGRYCG | 1 cut(s) | 1241 |
| BstMWI | GCNNNNNNNGC | 8 cut(s) | 74, 103, 159, 168, 784, 1382, 1772, 1889 |
| BstNI | CCWGG | 4 cut(s) | 789, 1212, 1526, 1579 |
| BstNSI | RCATGY | 4 cut(s) | 127, 372, 1157, 1744 |
| BstSCI | CCNGG | 4 cut(s) | 787, 1210, 1524, 1577 |
| BstSFI | CTRYAG | 1 cut(s) | 925 |
| BstV1I | GCAGC | 6 cut(s) | 69, 84, 1183, 1221, 1372, 1904 |
| BstV2I | GAAGAC | 3 cut(s) | 405, 758, 1743 |
| BstX2I | RGATCY | 2 cut(s) | 248, 620 |
| BstYI | RGATCY | 2 cut(s) | 248, 620 |
| Bsu15I | ATCGAT | 1 cut(s) | 196 |
| BsuI | GTATCC | 1 cut(s) | 1485 |
| BsuRI | GGCC | 8 cut(s) | 288, 862, 903, 1098, 1221, 1368, 1628, 1854 |
| BsuTUI | ATCGAT | 1 cut(s) | 196 |
| BtgZI | GCGATG | 3 cut(s) | 83, 297, 1741 |
| BtrI | CACGTC | 1 cut(s) | 750 |
| BtsCI | GGATG | 8 cut(s) | 877, 976, 1048, 1612, 1652, 1657, 1777, 1853 |
| BtsIMutI | CAGTG | 5 cut(s) | 378, 667, 1344, 1413, 1752 |
| BveI | ACCTGC | 1 cut(s) | 1308 |
| Cac8I | GCNNGC | 6 cut(s) | 215, 785, 1033, 1479, 1575, 1762 |
| CaiI | CAGNNNCTG | 2 cut(s) | 1196, 1766 |
| CciI | TCATGA | 2 cut(s) | 744, 1354 |
| CfoI | GCGC | 1 cut(s) | 1766 |
| Cfr10I | RCCGGY | 1 cut(s) | 100 |
| Cfr13I | GGNCC | 7 cut(s) | 287, 305, 613, 1067, 1164, 1219, 1627 |
| ClaI | ATCGAT | 1 cut(s) | 196 |
| CseI | GACGC | 3 cut(s) | 66, 151, 1578 |
| CsiI | ACCWGGT | 1 cut(s) | 1524 |
| Csp6I | GTAC | 4 cut(s) | 44, 959, 1053, 1397 |
| CspCI | CAANNNNNGTGG | 2 cut(s) | 1452, 1487 |
| CviQI | GTAC | 4 cut(s) | 44, 959, 1053, 1397 |
| DdeI | CTNAG | 6 cut(s) | 761, 779, 1290, 1320, 1336, 1767 |
| DpnI | GATC | 4 cut(s) | 250, 564, 622, 1206 |
| DpnII | GATC | 4 cut(s) | 248, 562, 620, 1204 |
| EaeI | YGGCCR | 2 cut(s) | 1096, 1852 |
| Eam1104I | CTCTTC | 3 cut(s) | 996, 1032, 1863 |
| EarI | CTCTTC | 3 cut(s) | 996, 1032, 1863 |
| Ecl136II | GAGCTC | 1 cut(s) | 213 |
| Eco130I | CCWWGG | 3 cut(s) | 313, 493, 1878 |
| Eco147I | AGGCCT | 1 cut(s) | 1368 |
| Eco24I | GRGCYC | 1 cut(s) | 215 |
| Eco31I | GGTCTC | 1 cut(s) | 241 |
| Eco32I | GATATC | 2 cut(s) | 147, 1842 |
| Eco47I | GGWCC | 4 cut(s) | 305, 613, 1067, 1164 |
| Eco53kI | GAGCTC | 1 cut(s) | 213 |
| Eco57I | CTGAAG | 3 cut(s) | 423, 1020, 1745 |
| Eco72I | CACGTG | 1 cut(s) | 159 |
| Eco88I | CYCGRG | 1 cut(s) | 693 |
| EcoICRI | GAGCTC | 1 cut(s) | 213 |
| EcoNI | CCTNNNNNAGG | 1 cut(s) | 1622 |
| EcoO109I | RGGNCCY | 4 cut(s) | 613, 1164, 1219, 1627 |
| EcoRI | GAATTC | 1 cut(s) | 1411 |
| EcoRII | CCWGG | 4 cut(s) | 787, 1210, 1524, 1577 |
| EcoRV | GATATC | 2 cut(s) | 147, 1842 |
| EcoT14I | CCWWGG | 3 cut(s) | 313, 493, 1878 |
| EcoT38I | GRGCYC | 1 cut(s) | 215 |
| ErhI | CCWWGG | 3 cut(s) | 313, 493, 1878 |
| FalI | AAGNNNNNCTT | 8 cut(s) | 357, 389, 422, 454, 561, 593, 767, 799 |
| FaqI | GGGAC | 4 cut(s) | 134, 599, 1177, 1860 |
| Fnu4HI | GCNGC | 6 cut(s) | 83, 98, 1197, 1235, 1386, 1893 |
| FokI | GGATG | 8 cut(s) | 864, 983, 1055, 1619, 1659, 1664, 1784, 1860 |
| FriOI | GRGCYC | 1 cut(s) | 215 |
| Fsp4HI | GCNGC | 6 cut(s) | 83, 98, 1197, 1235, 1386, 1893 |
| FspBI | CTAG | 3 cut(s) | 1640, 1827, 1832 |
| GlaI | GCGC | 1 cut(s) | 1765 |
| GluI | GCNGC | 6 cut(s) | 83, 98, 1197, 1235, 1386, 1893 |
| GsaI | CCCAGC | 1 cut(s) | 837 |
| HaeII | RGCGCY | 1 cut(s) | 1767 |
| HaeIII | GGCC | 8 cut(s) | 288, 862, 903, 1098, 1221, 1368, 1628, 1854 |
| HapII | CCGG | 4 cut(s) | 101, 566, 1241, 1845 |
| HgaI | GACGC | 3 cut(s) | 66, 151, 1578 |
| HhaI | GCGC | 1 cut(s) | 1766 |
| Hin1I | GRCGYC | 1 cut(s) | 77 |
| Hin6I | GCGC | 1 cut(s) | 1764 |
| HinP1I | GCGC | 1 cut(s) | 1764 |
| HincII | GTYRAC | 2 cut(s) | 1297, 1599 |
| HindII | GTYRAC | 2 cut(s) | 1297, 1599 |
| HindIII | AAGCTT | 2 cut(s) | 405, 776 |
| HinfI | GANTC | 6 cut(s) | 177, 1006, 1137, 1286, 1715, 1917 |
| HpaII | CCGG | 4 cut(s) | 101, 566, 1241, 1845 |
| HphI | GGTGA | 5 cut(s) | 211, 545, 713, 786, 1692 |
| Hpy166II | GTNNAC | 4 cut(s) | 704, 794, 1297, 1599 |
| Hpy188I | TCNGA | 6 cut(s) | 36, 248, 609, 716, 1000, 1321 |
| Hpy8I | GTNNAC | 4 cut(s) | 704, 794, 1297, 1599 |
| Hpy99I | CGWCG | 2 cut(s) | 82, 97 |
| HpyAV | CCTTC | 8 cut(s) | 22, 214, 604, 1082, 1379, 1637, 1720, 1915 |
| HpyCH4IV | ACGT | 3 cut(s) | 158, 749, 1422 |
| HpyF10VI | GCNNNNNNNGC | 8 cut(s) | 74, 103, 159, 168, 784, 1382, 1772, 1889 |
| HpyF3I | CTNAG | 6 cut(s) | 761, 779, 1290, 1320, 1336, 1767 |
| HpySE526I | ACGT | 3 cut(s) | 158, 749, 1422 |
| Hsp92I | GRCGYC | 1 cut(s) | 77 |
| HspAI | GCGC | 1 cut(s) | 1764 |
| KflI | GGGWCCC | 1 cut(s) | 1164 |
| Kpn2I | TCCGGA | 2 cut(s) | 565, 1844 |
| Kzo9I | GATC | 4 cut(s) | 248, 562, 620, 1204 |
| LmnI | GCTCC | 3 cut(s) | 438, 549, 921 |
| Lsp1109I | GCAGC | 6 cut(s) | 69, 84, 1183, 1221, 1372, 1904 |
| LweI | GCATC | 5 cut(s) | 29, 202, 1412, 1576, 1762 |
| MabI | ACCWGGT | 1 cut(s) | 1524 |
| MaeI | CTAG | 3 cut(s) | 1640, 1827, 1832 |
| MaeII | ACGT | 3 cut(s) | 158, 749, 1422 |
| MaeIII | GTNAC | 4 cut(s) | 14, 322, 656, 1423 |
| MalI | GATC | 4 cut(s) | 250, 564, 622, 1206 |
| MboI | GATC | 4 cut(s) | 248, 562, 620, 1204 |
| MflI | RGATCY | 2 cut(s) | 248, 620 |
| MhlI | GDGCHC | 1 cut(s) | 215 |
| MlsI | TGGCCA | 2 cut(s) | 1098, 1854 |
| MluCI | AATT | 8 cut(s) | 345, 385, 720, 935, 1060, 1411, 1551, 1822 |
| MluNI | TGGCCA | 2 cut(s) | 1098, 1854 |
| MlyI | GAGTC | 2 cut(s) | 1146, 1911 |
| MmeI | TCCRAC | 1 cut(s) | 14 |
| Mox20I | TGGCCA | 2 cut(s) | 1098, 1854 |
| MroI | TCCGGA | 2 cut(s) | 565, 1844 |
| MroXI | GAANNNNTTC | 2 cut(s) | 1005, 1415 |
| MscI | TGGCCA | 2 cut(s) | 1098, 1854 |
| MseI | TTAA | 5 cut(s) | 884, 1058, 1448, 1788, 1910 |
| MslI | CAYNNNNRTG | 3 cut(s) | 128, 1359, 1745 |
| Msp20I | TGGCCA | 2 cut(s) | 1098, 1854 |
| MspCI | CTTAAG | 1 cut(s) | 1909 |
| MspI | CCGG | 4 cut(s) | 101, 566, 1241, 1845 |
| MspR9I | CCNGG | 4 cut(s) | 789, 1212, 1526, 1579 |
| Mva1269I | GAATGC | 1 cut(s) | 462 |
| MvaI | CCWGG | 4 cut(s) | 789, 1212, 1526, 1579 |
| MwoI | GCNNNNNNNGC | 8 cut(s) | 74, 103, 159, 168, 784, 1382, 1772, 1889 |
| NdeII | GATC | 4 cut(s) | 248, 562, 620, 1204 |
| NlaIV | GGNNCC | 7 cut(s) | 132, 615, 1165, 1166, 1220, 1476, 1629 |
| NmeAIII | GCCGAG | 1 cut(s) | 1153 |
| NmuCI | GTSAC | 2 cut(s) | 322, 656 |
| NspI | RCATGY | 4 cut(s) | 127, 372, 1157, 1744 |
| PaeR7I | CTCGAG | 1 cut(s) | 693 |
| PagI | TCATGA | 2 cut(s) | 744, 1354 |
| PceI | AGGCCT | 1 cut(s) | 1368 |
| PcsI | WCGNNNNNNNCGW | 1 cut(s) | 155 |
| PctI | GAATGC | 1 cut(s) | 462 |
| PdmI | GAANNNNTTC | 2 cut(s) | 1005, 1415 |
| PfeI | GAWTC | 4 cut(s) | 177, 1006, 1286, 1715 |
| Pfl23II | CGTACG | 1 cut(s) | 43 |
| PflMI | CCANNNNNTGG | 2 cut(s) | 314, 1804 |
| PkrI | GCNGC | 6 cut(s) | 84, 99, 1198, 1236, 1387, 1894 |
| PleI | GAGTC | 2 cut(s) | 1145, 1911 |
| PmaCI | CACGTG | 1 cut(s) | 159 |
| PmlI | CACGTG | 1 cut(s) | 159 |
| PpsI | GAGTC | 2 cut(s) | 1145, 1911 |
| Ppu21I | YACGTR | 1 cut(s) | 159 |
| PpuMI | RGGWCCY | 2 cut(s) | 613, 1164 |
| PsiI | TTATAA | 2 cut(s) | 1278, 1623 |
| Psp124BI | GAGCTC | 1 cut(s) | 215 |
| Psp1406I | AACGTT | 1 cut(s) | 1422 |
| Psp5II | RGGWCCY | 2 cut(s) | 613, 1164 |
| Psp6I | CCWGG | 4 cut(s) | 787, 1210, 1524, 1577 |
| PspCI | CACGTG | 1 cut(s) | 159 |
| PspFI | CCCAGC | 1 cut(s) | 833 |
| PspGI | CCWGG | 4 cut(s) | 787, 1210, 1524, 1577 |
| PspLI | CGTACG | 1 cut(s) | 43 |
| PspN4I | GGNNCC | 7 cut(s) | 132, 615, 1165, 1166, 1220, 1476, 1629 |
| PspPI | GGNCC | 7 cut(s) | 287, 305, 613, 1067, 1164, 1219, 1627 |
| PspPPI | RGGWCCY | 2 cut(s) | 613, 1164 |
| PsrI | GAACNNNNNNTAC | 2 cut(s) | 1537, 1569 |
| PstNI | CAGNNNCTG | 2 cut(s) | 1196, 1766 |
| PsuI | RGATCY | 2 cut(s) | 248, 620 |
| RsaI | GTAC | 4 cut(s) | 45, 960, 1054, 1398 |
| RsaNI | GTAC | 4 cut(s) | 44, 959, 1053, 1397 |
| RseI | CAYNNNNRTG | 3 cut(s) | 128, 1359, 1745 |
| SacI | GAGCTC | 1 cut(s) | 215 |
| SaqAI | TTAA | 5 cut(s) | 884, 1058, 1448, 1788, 1910 |
| SatI | GCNGC | 6 cut(s) | 83, 98, 1197, 1235, 1386, 1893 |
| Sau3AI | GATC | 4 cut(s) | 248, 562, 620, 1204 |
| Sau96I | GGNCC | 7 cut(s) | 287, 305, 613, 1067, 1164, 1219, 1627 |
| SchI | GAGTC | 2 cut(s) | 1146, 1911 |
| ScrFI | CCNGG | 4 cut(s) | 789, 1212, 1526, 1579 |
| SduI | GDGCHC | 1 cut(s) | 215 |
| SexAI | ACCWGGT | 1 cut(s) | 1524 |
| SfaNI | GCATC | 5 cut(s) | 29, 202, 1412, 1576, 1762 |
| SfcI | CTRYAG | 1 cut(s) | 925 |
| Sfr274I | CTCGAG | 1 cut(s) | 693 |
| SinI | GGWCC | 4 cut(s) | 305, 613, 1067, 1164 |
| SlaI | CTCGAG | 1 cut(s) | 693 |
| SmiMI | CAYNNNNRTG | 3 cut(s) | 128, 1359, 1745 |
| SmlI | CTYRAG | 6 cut(s) | 421, 693, 1015, 1228, 1498, 1909 |
| SmoI | CTYRAG | 6 cut(s) | 421, 693, 1015, 1228, 1498, 1909 |
| SpeI | ACTAGT | 1 cut(s) | 1831 |
| Sse9I | AATT | 8 cut(s) | 345, 385, 720, 935, 1060, 1411, 1551, 1822 |
| SseBI | AGGCCT | 1 cut(s) | 1368 |
| SspMI | CTAG | 3 cut(s) | 1640, 1827, 1832 |
| SstI | GAGCTC | 1 cut(s) | 215 |
| StuI | AGGCCT | 1 cut(s) | 1368 |
| StyD4I | CCNGG | 4 cut(s) | 787, 1210, 1524, 1577 |
| StyI | CCWWGG | 3 cut(s) | 313, 493, 1878 |
| TaiI | ACGT | 3 cut(s) | 161, 752, 1425 |
| TaqI | TCGA | 3 cut(s) | 149, 196, 694 |
| TasI | AATT | 8 cut(s) | 345, 385, 720, 935, 1060, 1411, 1551, 1822 |
| TatI | WGTACW | 2 cut(s) | 1052, 1396 |
| TfiI | GAWTC | 4 cut(s) | 177, 1006, 1286, 1715 |
| Tru1I | TTAA | 5 cut(s) | 884, 1058, 1448, 1788, 1910 |
| Tru9I | TTAA | 5 cut(s) | 884, 1058, 1448, 1788, 1910 |
| TscAI | CASTG | 5 cut(s) | 385, 667, 1344, 1413, 1752 |
| TseFI | GTSAC | 2 cut(s) | 322, 656 |
| TseI | GCWGC | 6 cut(s) | 82, 97, 1196, 1234, 1385, 1892 |
| Tsp45I | GTSAC | 2 cut(s) | 322, 656 |
| TspDTI | ATGAA | 7 cut(s) | 49, 570, 733, 758, 929, 1134, 1668 |
| TspGWI | ACGGA | 3 cut(s) | 61, 189, 1619 |
| TspRI | CASTG | 5 cut(s) | 385, 667, 1344, 1413, 1752 |
| Van91I | CCANNNNNTGG | 2 cut(s) | 314, 1804 |
| Vha464I | CTTAAG | 1 cut(s) | 1909 |
| VpaK11BI | GGWCC | 4 cut(s) | 305, 613, 1067, 1164 |
| XagI | CCTNNNNNAGG | 1 cut(s) | 1622 |
| XapI | RAATTY | 4 cut(s) | 385, 1060, 1411, 1822 |
| XbaI | TCTAGA | 2 cut(s) | 1639, 1826 |
| XceI | RCATGY | 4 cut(s) | 127, 372, 1157, 1744 |
| XhoI | CTCGAG | 1 cut(s) | 693 |
| XmnI | GAANNNNTTC | 2 cut(s) | 1005, 1415 |
| XspI | CTAG | 3 cut(s) | 1640, 1827, 1832 |