Rorug02G0337000

Alpha/beta hydrolase family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000002
OG0008464
Physical Location & Seq
Reverse (-)
41881101 .. 41881732
632 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug02G0337000.1

Sequence Viewer

Length: 405 bp
ATGGCAGCAGAGAAAGTAGGAGGCATTGTGAAGAAAGGCCACGAGGAAGGCCTAAAATTAGCCACCTCAATCCTCCAACAATTCCAACTTCCTCAAGGAATTCTTCCACTGGCCGAAGTCATTGAAGTTGGATTCGTGGAGAGCACCGGGTACATGTGGATTGTGCAAGCGAAGAAGGTCGAGCATGAGTTCAAGATGATTAGCAAGCTTGTGAGCTATGACACTGAAATAACGGGCTACGTCGAGAAGAAGAGGATCAAGAAACTCAAGGGAGTGAAGGCCAAGGGGCTCATGCTGTGGCCTCCAGTGAGTGAGATCACAGTTGATGAGCCACCCACTGGGAAGATTCACTTTAAGAGCCTTGCTGGGATCACTAAGACCTTCCCTGTTGAGGCATTTGCTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0003674 GO:0003824 GO:0016787
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Abhydrolase_6

Protein Analysis

134

Amino Acids

14.83

Weight (kDa)

9.22

Isoelectric Point (pI)

35.21

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF538 PF04398 22 - 134 5.1e-34 Protein of unknown function, DUF538
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 338
AclWI GGATC 2 cut(s) 263, 377
AcoI YGGCCR 1 cut(s) 111
AcsI RAATTY 1 cut(s) 99
AfaI GTAC 1 cut(s) 152
AfiI CCNNNNNNNGG 2 cut(s) 338, 391
AflIII ACRYGT 1 cut(s) 153
AgsI TTSAA 2 cut(s) 125, 193
AluBI AGCT 2 cut(s) 208, 216
AluI AGCT 2 cut(s) 208, 216
Alw21I GWGCWC 1 cut(s) 146
AlwI GGATC 2 cut(s) 263, 377
AoxI GGCC 5 cut(s) 37, 49, 111, 279, 299
ApeKI GCWGC 1 cut(s) 5
ApoI RAATTY 1 cut(s) 99
AsuC2I CCSGG 1 cut(s) 148
BanII GRGCYC 1 cut(s) 291
BauI CACGAG 1 cut(s) 41
Bbv12I GWGCWC 1 cut(s) 146
BbvI GCAGC 1 cut(s) 17
BcnI CCSGG 1 cut(s) 148
BisI GCNGC 1 cut(s) 6
BlsI GCNGC 1 cut(s) 7
Bme1390I CCNGG 1 cut(s) 148
BmrFI CCNGG 1 cut(s) 148
BmrI ACTGGG 1 cut(s) 348
BmuI ACTGGG 1 cut(s) 348
BpmI CTGGAG 1 cut(s) 288
BpuEI CTTGAG 2 cut(s) 78, 251
BpuMI CCSGG 1 cut(s) 148
BsaJI CCNNGG 1 cut(s) 282
BsaXI ACNNNNNCTCC 2 cut(s) 12, 42
Bsc4I CCNNNNNNNGG 2 cut(s) 338, 391
Bse1I ACTGG 3 cut(s) 114, 305, 343
BseDI CCNNGG 1 cut(s) 282
BseLI CCNNNNNNNGG 2 cut(s) 338, 391
BseNI ACTGG 3 cut(s) 114, 305, 343
BseXI GCAGC 1 cut(s) 17
BseYI CCCAGC 1 cut(s) 365
BshFI GGCC 5 cut(s) 39, 51, 113, 281, 301
BsiHKAI GWGCWC 1 cut(s) 146
BsiSI CCGG 1 cut(s) 147
BslI CCNNNNNNNGG 2 cut(s) 338, 391
BsnI GGCC 5 cut(s) 39, 51, 113, 281, 301
Bsp1286I GDGCHC 2 cut(s) 146, 291
Bsp143I GATC 3 cut(s) 255, 315, 369
BspANI GGCC 5 cut(s) 39, 51, 113, 281, 301
BspPI GGATC 2 cut(s) 263, 377
BsrI ACTGG 3 cut(s) 114, 305, 343
BssECI CCNNGG 1 cut(s) 282
BssMI GATC 3 cut(s) 255, 315, 369
BssSI CACGAG 1 cut(s) 41
BssT1I CCWWGG 1 cut(s) 282
Bst2BI CACGAG 1 cut(s) 41
Bst4CI ACNGT 1 cut(s) 322
Bst6I CTCTTC 1 cut(s) 245
BstC8I GCNNGC 2 cut(s) 168, 206
BstDEI CTNAG 1 cut(s) 375
BstKTI GATC 3 cut(s) 258, 318, 372
BstMBI GATC 3 cut(s) 255, 315, 369
BstNSI RCATGY 1 cut(s) 157
BstSCI CCNGG 1 cut(s) 146
BstV1I GCAGC 1 cut(s) 17
BsuRI GGCC 5 cut(s) 39, 51, 113, 281, 301
BtsIMutI CAGTG 4 cut(s) 107, 222, 312, 336
Cac8I GCNNGC 2 cut(s) 168, 206
Csp6I GTAC 1 cut(s) 151
CviAII CATG 3 cut(s) 154, 185, 292
CviQI GTAC 1 cut(s) 151
DdeI CTNAG 1 cut(s) 375
DpnI GATC 3 cut(s) 257, 317, 371
DpnII GATC 3 cut(s) 255, 315, 369
EaeI YGGCCR 1 cut(s) 111
Eam1104I CTCTTC 1 cut(s) 245
EarI CTCTTC 1 cut(s) 245
Eco130I CCWWGG 1 cut(s) 282
Eco147I AGGCCT 1 cut(s) 51
Eco24I GRGCYC 1 cut(s) 291
EcoRI GAATTC 1 cut(s) 99
EcoT14I CCWWGG 1 cut(s) 282
EcoT38I GRGCYC 1 cut(s) 291
ErhI CCWWGG 1 cut(s) 282
FaeI CATG 3 cut(s) 157, 188, 295
FaiI YATR 4 cut(s) 155, 186, 219, 293
FalI AAGNNNNNCTT 4 cut(s) 87, 119, 335, 367
FatI CATG 3 cut(s) 153, 184, 291
Fnu4HI GCNGC 1 cut(s) 6
FriOI GRGCYC 1 cut(s) 291
Fsp4HI GCNGC 1 cut(s) 6
GluI GCNGC 1 cut(s) 6
GsaI CCCAGC 1 cut(s) 369
GsuI CTGGAG 1 cut(s) 288
HaeIII GGCC 5 cut(s) 39, 51, 113, 281, 301
HapII CCGG 1 cut(s) 147
Hin1II CATG 3 cut(s) 157, 188, 295
HindIII AAGCTT 1 cut(s) 206
HinfI GANTC 2 cut(s) 132, 346
HpaII CCGG 1 cut(s) 147
Hpy188III TCNNGA 3 cut(s) 193, 244, 259
Hpy99I CGWCG 1 cut(s) 245
HpyAV CCTTC 4 cut(s) 41, 169, 271, 391
HpyCH4III ACNGT 1 cut(s) 322
HpyCH4IV ACGT 1 cut(s) 240
HpyCH4V TGCA 1 cut(s) 166
HpyF3I CTNAG 1 cut(s) 375
HpySE526I ACGT 1 cut(s) 240
Hsp92II CATG 3 cut(s) 157, 188, 295
Kzo9I GATC 3 cut(s) 255, 315, 369
LpnPI CCDG 6 cut(s) 95, 160, 318, 324, 351, 399
Lsp1109I GCAGC 1 cut(s) 17
MaeII ACGT 1 cut(s) 240
MalI GATC 3 cut(s) 257, 317, 371
MboI GATC 3 cut(s) 255, 315, 369
MboII GAAGA 6 cut(s) 43, 95, 184, 259, 262, 355
MhlI GDGCHC 2 cut(s) 146, 291
MluCI AATT 3 cut(s) 56, 80, 99
MmeI TCCRAC 3 cut(s) 100, 109, 109
MnlI CCTC 8 cut(s) 14, 37, 76, 83, 102, 246, 312, 385
MseI TTAA 2 cut(s) 354, 403
MspI CCGG 1 cut(s) 147
MspR9I CCNGG 1 cut(s) 148
NciI CCSGG 1 cut(s) 148
NdeII GATC 3 cut(s) 255, 315, 369
NlaIII CATG 3 cut(s) 157, 188, 295
NspI RCATGY 1 cut(s) 157
PceI AGGCCT 1 cut(s) 51
PciI ACATGT 1 cut(s) 153
PfeI GAWTC 2 cut(s) 132, 346
PflMI CCANNNNNTGG 1 cut(s) 338
PkrI GCNGC 1 cut(s) 7
PscI ACATGT 1 cut(s) 153
PspFI CCCAGC 1 cut(s) 365
RsaI GTAC 1 cut(s) 152
RsaNI GTAC 1 cut(s) 151
SaqAI TTAA 2 cut(s) 354, 403
SatI GCNGC 1 cut(s) 6
Sau3AI GATC 3 cut(s) 255, 315, 369
ScrFI CCNGG 1 cut(s) 148
SduI GDGCHC 2 cut(s) 146, 291
SetI ASST 6 cut(s) 68, 180, 210, 218, 243, 383
SmlI CTYRAG 2 cut(s) 93, 266
SmoI CTYRAG 2 cut(s) 93, 266
Sse9I AATT 3 cut(s) 56, 80, 99
SseBI AGGCCT 1 cut(s) 51
StuI AGGCCT 1 cut(s) 51
StyD4I CCNGG 1 cut(s) 146
StyI CCWWGG 1 cut(s) 282
TaaI ACNGT 1 cut(s) 322
TaiI ACGT 1 cut(s) 243
TaqI TCGA 2 cut(s) 180, 243
TasI AATT 3 cut(s) 56, 80, 99
TfiI GAWTC 2 cut(s) 132, 346
Tru1I TTAA 2 cut(s) 354, 403
Tru9I TTAA 2 cut(s) 354, 403
TscAI CASTG 4 cut(s) 114, 229, 312, 343
TseI GCWGC 1 cut(s) 5
TspRI CASTG 4 cut(s) 114, 229, 312, 343
Van91I CCANNNNNTGG 1 cut(s) 338
XapI RAATTY 1 cut(s) 99
XceI RCATGY 1 cut(s) 157
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.