Alpha/beta hydrolase family
Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.
| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT1G15490 AT1G15490 AT1G15490 AT1G15490 AT1G80280 |
| fragaria_vesca | FvH4_6g30590 |
| malus_domestica | MD09G1218700.v1.1 MD17G1202000.v1.1 |
| prunus_persica | Prupe.3G077700_v2.0.a1 Prupe.3G077700_v2.0.a1 |
| pyrus_communis | pycom17g20630 pycom17g20640 |
| rosa_chinensis | RchiOBHm_Chr2g0137001 |
| rosa_laevigata | RLG00000019594 |
| rosa_multiflora | Rmu_sc0001374.1_g000058 |
| rosa_roxburghii | Rroxscaffold_2G00107780 |
| rosa_rugosa | Rorug02G0337000 Rorug02G0337100 |
| rosa_samantha | Rh2AG386000 Rh2BG392900 Rh2CG373400 Rh2DG409100 |
| rosa_wichuraiana | Rw2G031590 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 1 cut(s) | 1638 |
| Acc36I | ACCTGC | 2 cut(s) | 272, 1323 |
| AccB1I | GGYRCC | 2 cut(s) | 130, 1489 |
| AccB7I | CCANNNNNTGG | 1 cut(s) | 314 |
| AccI | GTMKAC | 1 cut(s) | 1690 |
| AccII | CGCG | 1 cut(s) | 1590 |
| AccIII | TCCGGA | 1 cut(s) | 1859 |
| AclI | AACGTT | 1 cut(s) | 1437 |
| AclWI | GGATC | 1 cut(s) | 557 |
| AcoI | YGGCCR | 1 cut(s) | 1867 |
| AcsI | RAATTY | 3 cut(s) | 385, 1426, 1837 |
| AcuI | CTGAAG | 3 cut(s) | 423, 1335, 1760 |
| AcvI | CACGTG | 1 cut(s) | 159 |
| AcyI | GRCGYC | 1 cut(s) | 77 |
| AfaI | GTAC | 6 cut(s) | 45, 975, 1084, 1204, 1413, 1458 |
| AfiI | CCNNNNNNNGG | 8 cut(s) | 314, 423, 638, 862, 1188, 1231, 1232, 1639 |
| AflII | CTTAAG | 3 cut(s) | 898, 1924, 1936 |
| AflIII | ACRYGT | 1 cut(s) | 123 |
| AgsI | TTSAA | 5 cut(s) | 181, 208, 1301, 1435, 1751 |
| AjnI | CCWGG | 4 cut(s) | 790, 1182, 1225, 1592 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 1523, 1555 |
| Alw21I | GWGCWC | 1 cut(s) | 215 |
| Alw26I | GTCTC | 1 cut(s) | 1801 |
| AlwI | GGATC | 1 cut(s) | 557 |
| AlwNI | CAGNNNCTG | 2 cut(s) | 572, 1781 |
| Ama87I | CYCGRG | 1 cut(s) | 693 |
| Aor13HI | TCCGGA | 1 cut(s) | 1859 |
| AoxI | GGCC | 6 cut(s) | 286, 875, 916, 1234, 1641, 1867 |
| ApeKI | GCWGC | 9 cut(s) | 82, 97, 525, 846, 849, 1211, 1249, 1400, 1907 |
| ApoI | RAATTY | 3 cut(s) | 385, 1426, 1837 |
| AscI | GGCGCGCC | 1 cut(s) | 1588 |
| Asp700I | GAANNNNTTC | 2 cut(s) | 1430, 1707 |
| AspLEI | GCGC | 3 cut(s) | 1590, 1592, 1781 |
| AspS9I | GGNCC | 6 cut(s) | 287, 305, 613, 1179, 1234, 1642 |
| AsuC2I | CCSGG | 1 cut(s) | 758 |
| AsuHPI | GGTGA | 7 cut(s) | 211, 545, 789, 1061, 1591, 1707, 1908 |
| AvaI | CYCGRG | 1 cut(s) | 693 |
| AvaII | GGWCC | 3 cut(s) | 305, 613, 1179 |
| BalI | TGGCCA | 1 cut(s) | 1869 |
| BanI | GGYRCC | 2 cut(s) | 130, 1489 |
| BanII | GRGCYC | 1 cut(s) | 215 |
| BarI | GAAGNNNNNNTAC | 1 cut(s) | 31 |
| BbrPI | CACGTG | 1 cut(s) | 159 |
| BbsI | GAAGAC | 4 cut(s) | 405, 586, 1147, 1376 |
| Bbv12I | GWGCWC | 1 cut(s) | 215 |
| BbvCI | CCTCAGC | 1 cut(s) | 1782 |
| BbvI | GCAGC | 9 cut(s) | 69, 84, 512, 833, 861, 1198, 1236, 1387, 1919 |
| BceAI | ACGGC | 1 cut(s) | 118 |
| BcgI | CGANNNNNNTGC | 6 cut(s) | 176, 210, 272, 306, 1526, 1560 |
| BciT130I | CCWGG | 4 cut(s) | 792, 1184, 1227, 1594 |
| BciVI | GTATCC | 1 cut(s) | 1500 |
| BcnI | CCSGG | 1 cut(s) | 758 |
| BcoDI | GTCTC | 1 cut(s) | 1801 |
| BfaI | CTAG | 3 cut(s) | 884, 1388, 1842 |
| BfmI | CTRYAG | 4 cut(s) | 526, 687, 847, 940 |
| BfoI | RGCGCY | 1 cut(s) | 1782 |
| BfrI | CTTAAG | 3 cut(s) | 898, 1924, 1936 |
| BfuAI | ACCTGC | 2 cut(s) | 272, 1323 |
| BfuI | GTATCC | 1 cut(s) | 1500 |
| BglII | AGATCT | 2 cut(s) | 248, 620 |
| BisI | GCNGC | 9 cut(s) | 83, 98, 526, 847, 850, 1212, 1250, 1401, 1908 |
| BlpI | GCTNAGC | 1 cut(s) | 782 |
| BlsI | GCNGC | 9 cut(s) | 84, 99, 527, 848, 851, 1213, 1251, 1402, 1909 |
| BmcAI | AGTACT | 1 cut(s) | 1458 |
| Bme1390I | CCNGG | 5 cut(s) | 758, 792, 1184, 1227, 1594 |
| Bme18I | GGWCC | 3 cut(s) | 305, 613, 1179 |
| BmeT110I | CYCGRG | 1 cut(s) | 693 |
| BmgT120I | GGNCC | 6 cut(s) | 287, 305, 613, 1179, 1234, 1642 |
| BmiI | GGNNCC | 8 cut(s) | 132, 615, 834, 1180, 1181, 1235, 1491, 1644 |
| BmrFI | CCNGG | 5 cut(s) | 758, 792, 1184, 1227, 1594 |
| BmrI | ACTGGG | 1 cut(s) | 707 |
| BmsI | GCATC | 5 cut(s) | 29, 202, 901, 1591, 1777 |
| BmuI | ACTGGG | 1 cut(s) | 707 |
| BpiI | GAAGAC | 4 cut(s) | 405, 586, 1147, 1376 |
| Bpu10I | CCTNAGC | 1 cut(s) | 1782 |
| Bpu1102I | GCTNAGC | 1 cut(s) | 782 |
| BpuEI | CTTGAG | 5 cut(s) | 406, 1051, 1228, 1534, 1557 |
| BpuMI | CCSGG | 1 cut(s) | 758 |
| Bsa29I | ATCGAT | 1 cut(s) | 196 |
| BsaAI | YACGTR | 1 cut(s) | 159 |
| BsaBI | GATNNNNATC | 1 cut(s) | 891 |
| BsaHI | GRCGYC | 1 cut(s) | 77 |
| BsaJI | CCNNGG | 7 cut(s) | 313, 493, 757, 1135, 1182, 1225, 1893 |
| BsaWI | WCCGGW | 1 cut(s) | 1859 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 985, 1015 |
| Bsc4I | CCNNNNNNNGG | 8 cut(s) | 314, 423, 638, 862, 1188, 1231, 1232, 1639 |
| Bse118I | RCCGGY | 1 cut(s) | 100 |
| Bse1I | ACTGG | 3 cut(s) | 713, 1760, 1851 |
| Bse3DI | GCAATG | 2 cut(s) | 819, 1733 |
| Bse8I | GATNNNNATC | 1 cut(s) | 891 |
| BseAI | TCCGGA | 1 cut(s) | 1859 |
| BseBI | CCWGG | 4 cut(s) | 792, 1184, 1227, 1594 |
| BseCI | ATCGAT | 1 cut(s) | 196 |
| BseDI | CCNNGG | 7 cut(s) | 313, 493, 757, 1135, 1182, 1225, 1893 |
| BseGI | GGATG | 7 cut(s) | 815, 892, 991, 1063, 1667, 1792, 1868 |
| BseJI | GATNNNNATC | 1 cut(s) | 891 |
| BseLI | CCNNNNNNNGG | 8 cut(s) | 314, 423, 638, 862, 1188, 1231, 1232, 1639 |
| BseMI | GCAATG | 2 cut(s) | 819, 1733 |
| BseMII | CTCAG | 6 cut(s) | 856, 1005, 1319, 1326, 1773, 1826 |
| BseNI | ACTGG | 3 cut(s) | 713, 1760, 1851 |
| BsePI | GCGCGC | 1 cut(s) | 1588 |
| BseRI | GAGGAG | 2 cut(s) | 1031, 1164 |
| BseXI | GCAGC | 9 cut(s) | 69, 84, 512, 833, 861, 1198, 1236, 1387, 1919 |
| BsgI | GTGCAG | 1 cut(s) | 1386 |
| Bsh1236I | CGCG | 1 cut(s) | 1590 |
| BshFI | GGCC | 6 cut(s) | 288, 877, 918, 1236, 1643, 1869 |
| BshNI | GGYRCC | 2 cut(s) | 130, 1489 |
| BshVI | ATCGAT | 1 cut(s) | 196 |
| BsiHKAI | GWGCWC | 1 cut(s) | 215 |
| BsiHKCI | CYCGRG | 1 cut(s) | 693 |
| BsiSI | CCGG | 3 cut(s) | 101, 757, 1860 |
| BsiWI | CGTACG | 1 cut(s) | 43 |
| BslFI | GGGAC | 5 cut(s) | 134, 599, 1192, 1679, 1875 |
| BslI | CCNNNNNNNGG | 8 cut(s) | 314, 423, 638, 862, 1188, 1231, 1232, 1639 |
| BsmAI | GTCTC | 1 cut(s) | 1801 |
| BsmFI | GGGAC | 5 cut(s) | 134, 599, 1192, 1679, 1875 |
| BsmI | GAATGC | 1 cut(s) | 462 |
| BsnI | GGCC | 6 cut(s) | 288, 877, 918, 1236, 1643, 1869 |
| BsoBI | CYCGRG | 1 cut(s) | 693 |
| Bsp1286I | GDGCHC | 1 cut(s) | 215 |
| Bsp13I | TCCGGA | 1 cut(s) | 1859 |
| Bsp143I | GATC | 4 cut(s) | 248, 562, 620, 1219 |
| Bsp1720I | GCTNAGC | 1 cut(s) | 782 |
| Bsp19I | CCATGG | 1 cut(s) | 1135 |
| BspANI | GGCC | 6 cut(s) | 288, 877, 918, 1236, 1643, 1869 |
| BspCNI | CTCAG | 6 cut(s) | 855, 1006, 1318, 1327, 1774, 1825 |
| BspDI | ATCGAT | 1 cut(s) | 196 |
| BspEI | TCCGGA | 1 cut(s) | 1859 |
| BspFNI | CGCG | 1 cut(s) | 1590 |
| BspHI | TCATGA | 1 cut(s) | 1879 |
| BspLI | GGNNCC | 8 cut(s) | 132, 615, 834, 1180, 1181, 1235, 1491, 1644 |
| BspMAI | CTGCAG | 2 cut(s) | 530, 851 |
| BspMI | ACCTGC | 2 cut(s) | 272, 1323 |
| BspPI | GGATC | 1 cut(s) | 557 |
| BspT107I | GGYRCC | 2 cut(s) | 130, 1489 |
| BspTI | CTTAAG | 3 cut(s) | 898, 1924, 1936 |
| BsrDI | GCAATG | 2 cut(s) | 819, 1733 |
| BsrFI | RCCGGY | 1 cut(s) | 100 |
| BsrI | ACTGG | 3 cut(s) | 713, 1760, 1851 |
| BssAI | RCCGGY | 1 cut(s) | 100 |
| BssECI | CCNNGG | 7 cut(s) | 313, 493, 757, 1135, 1182, 1225, 1893 |
| BssHII | GCGCGC | 1 cut(s) | 1588 |
| BssMI | GATC | 4 cut(s) | 248, 562, 620, 1219 |
| BssNI | GRCGYC | 1 cut(s) | 77 |
| BssT1I | CCWWGG | 4 cut(s) | 313, 493, 1135, 1893 |
| Bst2UI | CCWGG | 4 cut(s) | 792, 1184, 1227, 1594 |
| Bst6I | CTCTTC | 3 cut(s) | 774, 1047, 1878 |
| BstACI | GRCGYC | 1 cut(s) | 77 |
| BstAFI | CTTAAG | 3 cut(s) | 898, 1924, 1936 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 1904 |
| BstBAI | YACGTR | 1 cut(s) | 159 |
| BstC8I | GCNNGC | 5 cut(s) | 215, 1494, 1590, 1757, 1777 |
| BstDEI | CTNAG | 7 cut(s) | 782, 842, 1014, 1305, 1335, 1782, 1812 |
| BstDSI | CCRYGG | 1 cut(s) | 1135 |
| BstENI | CCTNNNNNAGG | 2 cut(s) | 636, 1637 |
| BstF5I | GGATG | 7 cut(s) | 815, 892, 991, 1063, 1667, 1792, 1868 |
| BstFNI | CGCG | 1 cut(s) | 1590 |
| BstH2I | RGCGCY | 1 cut(s) | 1782 |
| BstHHI | GCGC | 3 cut(s) | 1590, 1592, 1781 |
| BstKTI | GATC | 4 cut(s) | 251, 565, 623, 1222 |
| BstMAI | GTCTC | 1 cut(s) | 1801 |
| BstMBI | GATC | 4 cut(s) | 248, 562, 620, 1219 |
| BstMWI | GCNNNNNNNGC | 7 cut(s) | 74, 103, 159, 168, 1397, 1787, 1904 |
| BstNI | CCWGG | 4 cut(s) | 792, 1184, 1227, 1594 |
| BstNSI | RCATGY | 4 cut(s) | 127, 1172, 1759, 1954 |
| BstSCI | CCNGG | 5 cut(s) | 756, 790, 1182, 1225, 1592 |
| BstSFI | CTRYAG | 4 cut(s) | 526, 687, 847, 940 |
| BstUI | CGCG | 1 cut(s) | 1590 |
| BstV1I | GCAGC | 9 cut(s) | 69, 84, 512, 833, 861, 1198, 1236, 1387, 1919 |
| BstV2I | GAAGAC | 4 cut(s) | 405, 586, 1147, 1376 |
| BstX2I | RGATCY | 2 cut(s) | 248, 620 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 1142 |
| BstYI | RGATCY | 2 cut(s) | 248, 620 |
| Bsu15I | ATCGAT | 1 cut(s) | 196 |
| BsuI | GTATCC | 1 cut(s) | 1500 |
| BsuRI | GGCC | 6 cut(s) | 288, 877, 918, 1236, 1643, 1869 |
| BsuTUI | ATCGAT | 1 cut(s) | 196 |
| BtgI | CCRYGG | 1 cut(s) | 1135 |
| BtgZI | GCGATG | 2 cut(s) | 83, 297 |
| BtsCI | GGATG | 7 cut(s) | 815, 892, 991, 1063, 1667, 1792, 1868 |
| BtsI | GCAGTG | 1 cut(s) | 1673 |
| BtsIMutI | CAGTG | 6 cut(s) | 378, 667, 1359, 1428, 1673, 1767 |
| BveI | ACCTGC | 2 cut(s) | 272, 1323 |
| Cac8I | GCNNGC | 5 cut(s) | 215, 1494, 1590, 1757, 1777 |
| CaiI | CAGNNNCTG | 2 cut(s) | 572, 1781 |
| CciI | TCATGA | 1 cut(s) | 1879 |
| CfoI | GCGC | 3 cut(s) | 1590, 1592, 1781 |
| Cfr10I | RCCGGY | 1 cut(s) | 100 |
| Cfr13I | GGNCC | 6 cut(s) | 287, 305, 613, 1179, 1234, 1642 |
| ClaI | ATCGAT | 1 cut(s) | 196 |
| CseI | GACGC | 2 cut(s) | 66, 1407 |
| Csp6I | GTAC | 6 cut(s) | 44, 974, 1083, 1203, 1412, 1457 |
| CspCI | CAANNNNNGTGG | 2 cut(s) | 1467, 1502 |
| CviQI | GTAC | 6 cut(s) | 44, 974, 1083, 1203, 1412, 1457 |
| DdeI | CTNAG | 7 cut(s) | 782, 842, 1014, 1305, 1335, 1782, 1812 |
| DpnI | GATC | 4 cut(s) | 250, 564, 622, 1221 |
| DpnII | GATC | 4 cut(s) | 248, 562, 620, 1219 |
| DraI | TTTAAA | 1 cut(s) | 441 |
| EaeI | YGGCCR | 1 cut(s) | 1867 |
| Eam1104I | CTCTTC | 3 cut(s) | 774, 1047, 1878 |
| EarI | CTCTTC | 3 cut(s) | 774, 1047, 1878 |
| Ecl136II | GAGCTC | 1 cut(s) | 213 |
| Eco130I | CCWWGG | 4 cut(s) | 313, 493, 1135, 1893 |
| Eco24I | GRGCYC | 1 cut(s) | 215 |
| Eco32I | GATATC | 1 cut(s) | 1857 |
| Eco47I | GGWCC | 3 cut(s) | 305, 613, 1179 |
| Eco53kI | GAGCTC | 1 cut(s) | 213 |
| Eco57I | CTGAAG | 3 cut(s) | 423, 1335, 1760 |
| Eco72I | CACGTG | 1 cut(s) | 159 |
| Eco88I | CYCGRG | 1 cut(s) | 693 |
| EcoICRI | GAGCTC | 1 cut(s) | 213 |
| EcoNI | CCTNNNNNAGG | 2 cut(s) | 636, 1637 |
| EcoO109I | RGGNCCY | 4 cut(s) | 613, 1179, 1234, 1642 |
| EcoRI | GAATTC | 1 cut(s) | 1426 |
| EcoRII | CCWGG | 4 cut(s) | 790, 1182, 1225, 1592 |
| EcoRV | GATATC | 1 cut(s) | 1857 |
| EcoT14I | CCWWGG | 4 cut(s) | 313, 493, 1135, 1893 |
| EcoT22I | ATGCAT | 1 cut(s) | 1956 |
| EcoT38I | GRGCYC | 1 cut(s) | 215 |
| ErhI | CCWWGG | 4 cut(s) | 313, 493, 1135, 1893 |
| FalI | AAGNNNNNCTT | 6 cut(s) | 357, 389, 561, 593, 770, 802 |
| FaqI | GGGAC | 5 cut(s) | 134, 599, 1192, 1679, 1875 |
| FauNDI | CATATG | 1 cut(s) | 1699 |
| FblI | GTMKAC | 1 cut(s) | 1690 |
| Fnu4HI | GCNGC | 9 cut(s) | 83, 98, 526, 847, 850, 1212, 1250, 1401, 1908 |
| FokI | GGATG | 7 cut(s) | 802, 879, 998, 1070, 1674, 1799, 1875 |
| FriOI | GRGCYC | 1 cut(s) | 215 |
| Fsp4HI | GCNGC | 9 cut(s) | 83, 98, 526, 847, 850, 1212, 1250, 1401, 1908 |
| FspBI | CTAG | 3 cut(s) | 884, 1388, 1842 |
| GlaI | GCGC | 3 cut(s) | 1589, 1591, 1780 |
| GluI | GCNGC | 9 cut(s) | 83, 98, 526, 847, 850, 1212, 1250, 1401, 1908 |
| HaeII | RGCGCY | 1 cut(s) | 1782 |
| HaeIII | GGCC | 6 cut(s) | 288, 877, 918, 1236, 1643, 1869 |
| HapII | CCGG | 3 cut(s) | 101, 757, 1860 |
| HgaI | GACGC | 2 cut(s) | 66, 1407 |
| HhaI | GCGC | 3 cut(s) | 1590, 1592, 1781 |
| Hin1I | GRCGYC | 1 cut(s) | 77 |
| Hin6I | GCGC | 3 cut(s) | 1588, 1590, 1779 |
| HinP1I | GCGC | 3 cut(s) | 1588, 1590, 1779 |
| HincII | GTYRAC | 2 cut(s) | 1312, 1614 |
| HindII | GTYRAC | 2 cut(s) | 1312, 1614 |
| HindIII | AAGCTT | 3 cut(s) | 366, 405, 779 |
| HinfI | GANTC | 6 cut(s) | 177, 1021, 1152, 1301, 1730, 1932 |
| HpaI | GTTAAC | 1 cut(s) | 1614 |
| HpaII | CCGG | 3 cut(s) | 101, 757, 1860 |
| HphI | GGTGA | 7 cut(s) | 211, 545, 789, 1061, 1591, 1707, 1908 |
| Hpy166II | GTNNAC | 4 cut(s) | 797, 1312, 1614, 1691 |
| Hpy188I | TCNGA | 5 cut(s) | 248, 609, 719, 1015, 1336 |
| Hpy8I | GTNNAC | 4 cut(s) | 797, 1312, 1614, 1691 |
| Hpy99I | CGWCG | 3 cut(s) | 82, 97, 1257 |
| HpyCH4IV | ACGT | 4 cut(s) | 158, 167, 1437, 1623 |
| HpyF10VI | GCNNNNNNNGC | 7 cut(s) | 74, 103, 159, 168, 1397, 1787, 1904 |
| HpyF3I | CTNAG | 7 cut(s) | 782, 842, 1014, 1305, 1335, 1782, 1812 |
| HpySE526I | ACGT | 4 cut(s) | 158, 167, 1437, 1623 |
| Hsp92I | GRCGYC | 1 cut(s) | 77 |
| HspAI | GCGC | 3 cut(s) | 1588, 1590, 1779 |
| KflI | GGGWCCC | 1 cut(s) | 1179 |
| Kpn2I | TCCGGA | 1 cut(s) | 1859 |
| KspAI | GTTAAC | 1 cut(s) | 1614 |
| Kzo9I | GATC | 4 cut(s) | 248, 562, 620, 1219 |
| LmnI | GCTCC | 3 cut(s) | 438, 857, 936 |
| Lsp1109I | GCAGC | 9 cut(s) | 69, 84, 512, 833, 861, 1198, 1236, 1387, 1919 |
| LweI | GCATC | 5 cut(s) | 29, 202, 901, 1591, 1777 |
| MaeI | CTAG | 3 cut(s) | 884, 1388, 1842 |
| MaeII | ACGT | 4 cut(s) | 158, 167, 1437, 1623 |
| MaeIII | GTNAC | 6 cut(s) | 14, 163, 322, 656, 1367, 1438 |
| MalI | GATC | 4 cut(s) | 250, 564, 622, 1221 |
| MboI | GATC | 4 cut(s) | 248, 562, 620, 1219 |
| MflI | RGATCY | 2 cut(s) | 248, 620 |
| MhlI | GDGCHC | 1 cut(s) | 215 |
| MlsI | TGGCCA | 1 cut(s) | 1869 |
| MluCI | AATT | 9 cut(s) | 345, 385, 723, 950, 1070, 1426, 1443, 1566, 1837 |
| MluNI | TGGCCA | 1 cut(s) | 1869 |
| MlyI | GAGTC | 2 cut(s) | 1161, 1926 |
| Mox20I | TGGCCA | 1 cut(s) | 1869 |
| Mph1103I | ATGCAT | 1 cut(s) | 1956 |
| MroI | TCCGGA | 1 cut(s) | 1859 |
| MroXI | GAANNNNTTC | 2 cut(s) | 1430, 1707 |
| MscI | TGGCCA | 1 cut(s) | 1869 |
| MslI | CAYNNNNRTG | 3 cut(s) | 128, 1374, 1760 |
| Msp20I | TGGCCA | 1 cut(s) | 1869 |
| MspA1I | CMGCKG | 1 cut(s) | 846 |
| MspCI | CTTAAG | 3 cut(s) | 898, 1924, 1936 |
| MspI | CCGG | 3 cut(s) | 101, 757, 1860 |
| MspR9I | CCNGG | 5 cut(s) | 758, 792, 1184, 1227, 1594 |
| Mva1269I | GAATGC | 1 cut(s) | 462 |
| MvaI | CCWGG | 4 cut(s) | 792, 1184, 1227, 1594 |
| MvnI | CGCG | 1 cut(s) | 1590 |
| MwoI | GCNNNNNNNGC | 7 cut(s) | 74, 103, 159, 168, 1397, 1787, 1904 |
| NciI | CCSGG | 1 cut(s) | 758 |
| NcoI | CCATGG | 1 cut(s) | 1135 |
| NdeI | CATATG | 1 cut(s) | 1699 |
| NdeII | GATC | 4 cut(s) | 248, 562, 620, 1219 |
| NlaIV | GGNNCC | 8 cut(s) | 132, 615, 834, 1180, 1181, 1235, 1491, 1644 |
| NmeAIII | GCCGAG | 1 cut(s) | 1168 |
| NmuCI | GTSAC | 3 cut(s) | 322, 656, 1367 |
| NsiI | ATGCAT | 1 cut(s) | 1956 |
| NspI | RCATGY | 4 cut(s) | 127, 1172, 1759, 1954 |
| PaeI | GCATGC | 1 cut(s) | 1759 |
| PaeR7I | CTCGAG | 1 cut(s) | 693 |
| PagI | TCATGA | 1 cut(s) | 1879 |
| PalAI | GGCGCGCC | 1 cut(s) | 1588 |
| PauI | GCGCGC | 1 cut(s) | 1588 |
| PciI | ACATGT | 1 cut(s) | 123 |
| PcsI | WCGNNNNNNNCGW | 2 cut(s) | 155, 164 |
| PctI | GAATGC | 1 cut(s) | 462 |
| PdmI | GAANNNNTTC | 2 cut(s) | 1430, 1707 |
| PfeI | GAWTC | 4 cut(s) | 177, 1021, 1301, 1730 |
| Pfl23II | CGTACG | 1 cut(s) | 43 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 314 |
| PkrI | GCNGC | 9 cut(s) | 84, 99, 527, 848, 851, 1213, 1251, 1402, 1909 |
| PleI | GAGTC | 2 cut(s) | 1160, 1926 |
| PmaCI | CACGTG | 1 cut(s) | 159 |
| PmlI | CACGTG | 1 cut(s) | 159 |
| PpsI | GAGTC | 2 cut(s) | 1160, 1926 |
| Ppu21I | YACGTR | 1 cut(s) | 159 |
| PpuMI | RGGWCCY | 2 cut(s) | 613, 1179 |
| PscI | ACATGT | 1 cut(s) | 123 |
| PsiI | TTATAA | 1 cut(s) | 1638 |
| Psp124BI | GAGCTC | 1 cut(s) | 215 |
| Psp1406I | AACGTT | 1 cut(s) | 1437 |
| Psp5II | RGGWCCY | 2 cut(s) | 613, 1179 |
| Psp6I | CCWGG | 4 cut(s) | 790, 1182, 1225, 1592 |
| PspCI | CACGTG | 1 cut(s) | 159 |
| PspGI | CCWGG | 4 cut(s) | 790, 1182, 1225, 1592 |
| PspLI | CGTACG | 1 cut(s) | 43 |
| PspN4I | GGNNCC | 8 cut(s) | 132, 615, 834, 1180, 1181, 1235, 1491, 1644 |
| PspPI | GGNCC | 6 cut(s) | 287, 305, 613, 1179, 1234, 1642 |
| PspPPI | RGGWCCY | 2 cut(s) | 613, 1179 |
| PsrI | GAACNNNNNNTAC | 4 cut(s) | 1060, 1092, 1552, 1584 |
| PstI | CTGCAG | 2 cut(s) | 530, 851 |
| PstNI | CAGNNNCTG | 2 cut(s) | 572, 1781 |
| PsuI | RGATCY | 2 cut(s) | 248, 620 |
| PteI | GCGCGC | 1 cut(s) | 1588 |
| PvuII | CAGCTG | 1 cut(s) | 846 |
| RsaI | GTAC | 6 cut(s) | 45, 975, 1084, 1204, 1413, 1458 |
| RsaNI | GTAC | 6 cut(s) | 44, 974, 1083, 1203, 1412, 1457 |
| RseI | CAYNNNNRTG | 3 cut(s) | 128, 1374, 1760 |
| SacI | GAGCTC | 1 cut(s) | 215 |
| SatI | GCNGC | 9 cut(s) | 83, 98, 526, 847, 850, 1212, 1250, 1401, 1908 |
| Sau3AI | GATC | 4 cut(s) | 248, 562, 620, 1219 |
| Sau96I | GGNCC | 6 cut(s) | 287, 305, 613, 1179, 1234, 1642 |
| ScaI | AGTACT | 1 cut(s) | 1458 |
| SchI | GAGTC | 2 cut(s) | 1161, 1926 |
| ScrFI | CCNGG | 5 cut(s) | 758, 792, 1184, 1227, 1594 |
| SduI | GDGCHC | 1 cut(s) | 215 |
| SfaNI | GCATC | 5 cut(s) | 29, 202, 901, 1591, 1777 |
| SfcI | CTRYAG | 4 cut(s) | 526, 687, 847, 940 |
| Sfr274I | CTCGAG | 1 cut(s) | 693 |
| SgsI | GGCGCGCC | 1 cut(s) | 1588 |
| SinI | GGWCC | 3 cut(s) | 305, 613, 1179 |
| SlaI | CTCGAG | 1 cut(s) | 693 |
| SmiMI | CAYNNNNRTG | 3 cut(s) | 128, 1374, 1760 |
| SmlI | CTYRAG | 9 cut(s) | 421, 693, 898, 1030, 1243, 1513, 1572, 1924, 1936 |
| SmoI | CTYRAG | 9 cut(s) | 421, 693, 898, 1030, 1243, 1513, 1572, 1924, 1936 |
| SphI | GCATGC | 1 cut(s) | 1759 |
| Sse9I | AATT | 9 cut(s) | 345, 385, 723, 950, 1070, 1426, 1443, 1566, 1837 |
| SspMI | CTAG | 3 cut(s) | 884, 1388, 1842 |
| SstI | GAGCTC | 1 cut(s) | 215 |
| StyD4I | CCNGG | 5 cut(s) | 756, 790, 1182, 1225, 1592 |
| StyI | CCWWGG | 4 cut(s) | 313, 493, 1135, 1893 |
| TaiI | ACGT | 4 cut(s) | 161, 170, 1440, 1626 |
| TaqI | TCGA | 4 cut(s) | 149, 196, 694, 911 |
| TasI | AATT | 9 cut(s) | 345, 385, 723, 950, 1070, 1426, 1443, 1566, 1837 |
| TatI | WGTACW | 2 cut(s) | 1411, 1456 |
| TfiI | GAWTC | 4 cut(s) | 177, 1021, 1301, 1730 |
| TscAI | CASTG | 6 cut(s) | 385, 667, 1359, 1428, 1680, 1767 |
| TseFI | GTSAC | 3 cut(s) | 322, 656, 1367 |
| TseI | GCWGC | 9 cut(s) | 82, 97, 525, 846, 849, 1211, 1249, 1400, 1907 |
| Tsp45I | GTSAC | 3 cut(s) | 322, 656, 1367 |
| TspDTI | ATGAA | 8 cut(s) | 49, 570, 714, 736, 761, 944, 1716, 1896 |
| TspGWI | ACGGA | 2 cut(s) | 61, 189 |
| TspRI | CASTG | 6 cut(s) | 385, 667, 1359, 1428, 1680, 1767 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 314 |
| Vha464I | CTTAAG | 3 cut(s) | 898, 1924, 1936 |
| VpaK11BI | GGWCC | 3 cut(s) | 305, 613, 1179 |
| XagI | CCTNNNNNAGG | 2 cut(s) | 636, 1637 |
| XapI | RAATTY | 3 cut(s) | 385, 1426, 1837 |
| XbaI | TCTAGA | 1 cut(s) | 1841 |
| XceI | RCATGY | 4 cut(s) | 127, 1172, 1759, 1954 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 826 |
| XhoI | CTCGAG | 1 cut(s) | 693 |
| XmiI | GTMKAC | 1 cut(s) | 1690 |
| XmnI | GAANNNNTTC | 2 cut(s) | 1430, 1707 |
| XspI | CTAG | 3 cut(s) | 884, 1388, 1842 |
| ZrmI | AGTACT | 1 cut(s) | 1458 |
| Zsp2I | ATGCAT | 1 cut(s) | 1956 |