Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr17

Orthogroup ID

OG0008464

Physical Location & Seq

Genomic Coordinates Forward (+)

19058463 .. 19060142

Gene Structure 1680 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom17g20630.3

Sequence Viewer

CDS Protein Promoter (2k)

Length: 675 bp

ATGGCGAAGGGAGGTTACTTCTTGGAGAAGGTTCGGAGATGCGTACGGACGGTGTTCTTCATGGTGGCGATGGTGGTGTCGCTGCTTGTGTCGTCGCTGCCTGTGCTGGTGGCGATAGGGGACATGCTGGTGCCGTGCGTGTTGATATCCAGCTTCACGTGCGTCACGTGCTACGGATTCAAAGAGCATTTGCATCGATATGCCTTCAAGAGCTCGCTCACCGATATTCCTCTGGTCTCCTTTATCAGATCTCTCATCATTATCTGCGTGTATTCCATGTGCGATGGCCCTGCTCTCTCACACGGTCCATACCTTGGAACTGTGACTTTCTGCTCCTTTGTCTCAATTCTTCTTCTTTCAATCAAAGCATGTCTTTTCACTGTAAATTCTCAAATAGAGGCTGAAGCTTCGTCTTCCCTCTCAAGGCAGAAGCTCCACTTGAAGAAGTCATGGGGAATGCCTGTCTTGTTTCTCTCATCAGTAGTATTTGCCCTTGGTCATACTGTGGTTGCTTATAGAACAAGTTGCAGAGCAAGGAGGAAGCTCATGTTTCACCGAGTTGATCCGGAAGCTGTCCTTTCATGCAAAAATGTATTCTCTGGCTATCAGAAGGTCCCAGATCAAGATCTCCCACACCGTCAGGAGGAAGAACCCCAAAAAGTGACAGTGAAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0016787

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Abhydrolase_6

Protein Analysis

225

Amino Acids

25.01

Weight (kDa)

9.3

Isoelectric Point (pI)

39.86

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008464)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G15490 AT1G15490 AT1G15490 AT1G15490 AT1G80280
fragaria_vesca	FvH4_6g30590
malus_domestica	MD09G1218700.v1.1 MD17G1202000.v1.1
prunus_persica	Prupe.3G077700_v2.0.a1 Prupe.3G077700_v2.0.a1
pyrus_communis	pycom17g20630 pycom17g20640
rosa_chinensis	RchiOBHm_Chr2g0137001
rosa_laevigata	RLG00000019594
rosa_multiflora	Rmu_sc0001374.1_g000058
rosa_roxburghii	Rroxscaffold_2G00107780
rosa_rugosa	Rorug02G0337000 Rorug02G0337100
rosa_samantha	Rh2AG386000 Rh2BG392900 Rh2CG373400 Rh2DG409100
rosa_wichuraiana	Rw2G031590

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	130
AccB7I	CCANNNNNTGG	1 cut(s)	314
AccIII	TCCGGA	1 cut(s)	565
AclWI	GGATC	1 cut(s)	557
AcsI	RAATTY	1 cut(s)	385
AcuI	CTGAAG	1 cut(s)	423
AcvI	CACGTG	2 cut(s)	159, 168
AfaI	GTAC	1 cut(s)	45
AfiI	CCNNNNNNNGG	3 cut(s)	314, 423, 643
AgsI	TTSAA	4 cut(s)	181, 208, 360, 442
AluBI	AGCT	6 cut(s)	153, 213, 407, 433, 544, 572
AluI	AGCT	6 cut(s)	153, 213, 407, 433, 544, 572
Alw21I	GWGCWC	1 cut(s)	215
Alw26I	GTCTC	2 cut(s)	241, 346
AlwI	GGATC	1 cut(s)	557
Aor13HI	TCCGGA	1 cut(s)	565
AoxI	GGCC	1 cut(s)	286
ApeKI	GCWGC	2 cut(s)	82, 97
ApoI	RAATTY	1 cut(s)	385
AspS9I	GGNCC	3 cut(s)	287, 305, 613
AsuHPI	GGTGA	2 cut(s)	211, 545
AvaII	GGWCC	2 cut(s)	305, 613
BanI	GGYRCC	1 cut(s)	130
BanII	GRGCYC	1 cut(s)	215
BarI	GAAGNNNNNNTAC	1 cut(s)	31
BbrPI	CACGTG	2 cut(s)	159, 168
BbsI	GAAGAC	1 cut(s)	405
Bbv12I	GWGCWC	1 cut(s)	215
BbvI	GCAGC	2 cut(s)	69, 84
BccI	CCATC	2 cut(s)	64, 278
BceAI	ACGGC	1 cut(s)	118
BcgI	CGANNNNNNTGC	4 cut(s)	176, 210, 272, 306
BcoDI	GTCTC	2 cut(s)	241, 346
BglII	AGATCT	2 cut(s)	248, 625
BisI	GCNGC	2 cut(s)	83, 98
BlsI	GCNGC	2 cut(s)	84, 99
Bme18I	GGWCC	2 cut(s)	305, 613
BmgT120I	GGNCC	3 cut(s)	287, 305, 613
BmiI	GGNNCC	2 cut(s)	132, 615
BmsI	GCATC	2 cut(s)	29, 202
BpiI	GAAGAC	1 cut(s)	405
BpuEI	CTTGAG	1 cut(s)	406
Bsa29I	ATCGAT	1 cut(s)	196
BsaAI	YACGTR	2 cut(s)	159, 168
BsaBI	GATNNNNATC	1 cut(s)	624
BsaI	GGTCTC	1 cut(s)	241
BsaJI	CCNNGG	2 cut(s)	313, 493
BsaWI	WCCGGW	1 cut(s)	565
Bsc4I	CCNNNNNNNGG	3 cut(s)	314, 423, 643
Bse8I	GATNNNNATC	1 cut(s)	624
BseAI	TCCGGA	1 cut(s)	565
BseCI	ATCGAT	1 cut(s)	196
BseDI	CCNNGG	2 cut(s)	313, 493
BseJI	GATNNNNATC	1 cut(s)	624
BseLI	CCNNNNNNNGG	3 cut(s)	314, 423, 643
BseXI	GCAGC	2 cut(s)	69, 84
BshFI	GGCC	1 cut(s)	288
BshNI	GGYRCC	1 cut(s)	130
BshVI	ATCGAT	1 cut(s)	196
BsiHKAI	GWGCWC	1 cut(s)	215
BsiSI	CCGG	1 cut(s)	566
BsiWI	CGTACG	1 cut(s)	43
BslFI	GGGAC	2 cut(s)	134, 599
BslI	CCNNNNNNNGG	3 cut(s)	314, 423, 643
BsmAI	GTCTC	2 cut(s)	241, 346
BsmFI	GGGAC	2 cut(s)	134, 599
BsmI	GAATGC	1 cut(s)	462
BsnI	GGCC	1 cut(s)	288
Bso31I	GGTCTC	1 cut(s)	241
Bsp1286I	GDGCHC	1 cut(s)	215
Bsp13I	TCCGGA	1 cut(s)	565
Bsp143I	GATC	4 cut(s)	248, 562, 619, 625
BspANI	GGCC	1 cut(s)	288
BspDI	ATCGAT	1 cut(s)	196
BspEI	TCCGGA	1 cut(s)	565
BspLI	GGNNCC	2 cut(s)	132, 615
BspPI	GGATC	1 cut(s)	557
BspT107I	GGYRCC	1 cut(s)	130
BspTNI	GGTCTC	1 cut(s)	241
BssECI	CCNNGG	2 cut(s)	313, 493
BssMI	GATC	4 cut(s)	248, 562, 619, 625
BssT1I	CCWWGG	2 cut(s)	313, 493
Bst4CI	ACNGT	7 cut(s)	52, 305, 322, 382, 505, 638, 667
BstBAI	YACGTR	2 cut(s)	159, 168
BstC8I	GCNNGC	1 cut(s)	215
BstKTI	GATC	4 cut(s)	251, 565, 622, 628
BstMAI	GTCTC	2 cut(s)	241, 346
BstMBI	GATC	4 cut(s)	248, 562, 619, 625
BstMWI	GCNNNNNNNGC	3 cut(s)	103, 159, 168
BstNSI	RCATGY	2 cut(s)	127, 372
BstV1I	GCAGC	2 cut(s)	69, 84
BstV2I	GAAGAC	1 cut(s)	405
BstX2I	RGATCY	2 cut(s)	248, 625
BstYI	RGATCY	2 cut(s)	248, 625
Bsu15I	ATCGAT	1 cut(s)	196
BsuRI	GGCC	1 cut(s)	288
BsuTUI	ATCGAT	1 cut(s)	196
BtgZI	GCGATG	2 cut(s)	83, 297
BtsIMutI	CAGTG	2 cut(s)	378, 672
Cac8I	GCNNGC	1 cut(s)	215
Cfr13I	GGNCC	3 cut(s)	287, 305, 613
ClaI	ATCGAT	1 cut(s)	196
CseI	GACGC	1 cut(s)	151
Csp6I	GTAC	1 cut(s)	44
CviAII	CATG	7 cut(s)	61, 124, 277, 369, 450, 547, 582
CviJI	RGCY	9 cut(s)	153, 213, 288, 401, 407, 433, 544, 572, 603
CviKI_1	RGCY	9 cut(s)	153, 213, 288, 401, 407, 433, 544, 572, 603
CviQI	GTAC	1 cut(s)	44
DpnI	GATC	4 cut(s)	250, 564, 621, 627
DpnII	GATC	4 cut(s)	248, 562, 619, 625
Ecl136II	GAGCTC	1 cut(s)	213
Eco130I	CCWWGG	2 cut(s)	313, 493
Eco24I	GRGCYC	1 cut(s)	215
Eco31I	GGTCTC	1 cut(s)	241
Eco32I	GATATC	1 cut(s)	147
Eco47I	GGWCC	2 cut(s)	305, 613
Eco53kI	GAGCTC	1 cut(s)	213
Eco57I	CTGAAG	1 cut(s)	423
Eco72I	CACGTG	2 cut(s)	159, 168
EcoICRI	GAGCTC	1 cut(s)	213
EcoO109I	RGGNCCY	1 cut(s)	613
EcoRV	GATATC	1 cut(s)	147
EcoT14I	CCWWGG	2 cut(s)	313, 493
EcoT38I	GRGCYC	1 cut(s)	215
ErhI	CCWWGG	2 cut(s)	313, 493
FaeI	CATG	7 cut(s)	64, 127, 280, 372, 453, 550, 585
FalI	AAGNNNNNCTT	6 cut(s)	357, 389, 422, 454, 561, 593
FaqI	GGGAC	2 cut(s)	134, 599
FatI	CATG	7 cut(s)	60, 123, 276, 368, 449, 546, 581
Fnu4HI	GCNGC	2 cut(s)	83, 98
FriOI	GRGCYC	1 cut(s)	215
Fsp4HI	GCNGC	2 cut(s)	83, 98
GluI	GCNGC	2 cut(s)	83, 98
HaeIII	GGCC	1 cut(s)	288
HapII	CCGG	1 cut(s)	566
HgaI	GACGC	1 cut(s)	151
Hin1II	CATG	7 cut(s)	64, 127, 280, 372, 453, 550, 585
HindIII	AAGCTT	1 cut(s)	405
HinfI	GANTC	1 cut(s)	177
HpaII	CCGG	1 cut(s)	566
HphI	GGTGA	2 cut(s)	211, 545
Hpy188I	TCNGA	3 cut(s)	36, 248, 609
Hpy188III	TCNNGA	4 cut(s)	208, 566, 623, 641
Hpy99I	CGWCG	1 cut(s)	97
HpyAV	CCTTC	3 cut(s)	22, 214, 604
HpyCH4III	ACNGT	7 cut(s)	52, 305, 322, 382, 505, 638, 667
HpyCH4IV	ACGT	2 cut(s)	158, 167
HpyCH4V	TGCA	3 cut(s)	193, 528, 585
HpyF10VI	GCNNNNNNNGC	3 cut(s)	103, 159, 168
HpySE526I	ACGT	2 cut(s)	158, 167
Hsp92II	CATG	7 cut(s)	64, 127, 280, 372, 453, 550, 585
Kpn2I	TCCGGA	1 cut(s)	565
Kzo9I	GATC	4 cut(s)	248, 562, 619, 625
LmnI	GCTCC	2 cut(s)	338, 438
Lsp1109I	GCAGC	2 cut(s)	69, 84
LweI	GCATC	2 cut(s)	29, 202
MaeII	ACGT	2 cut(s)	158, 167
MaeIII	GTNAC	4 cut(s)	14, 163, 322, 661
MalI	GATC	4 cut(s)	250, 564, 621, 627
MboI	GATC	4 cut(s)	248, 562, 619, 625
MboII	GAAGA	6 cut(s)	49, 341, 344, 405, 454, 659
MflI	RGATCY	2 cut(s)	248, 625
MhlI	GDGCHC	1 cut(s)	215
MluCI	AATT	2 cut(s)	345, 385
MnlI	CCTC	6 cut(s)	5, 240, 391, 428, 531, 637
MroI	TCCGGA	1 cut(s)	565
MslI	CAYNNNNRTG	2 cut(s)	128, 198
MspI	CCGG	1 cut(s)	566
Mva1269I	GAATGC	1 cut(s)	462
MwoI	GCNNNNNNNGC	3 cut(s)	103, 159, 168
NdeII	GATC	4 cut(s)	248, 562, 619, 625
NlaIII	CATG	7 cut(s)	64, 127, 280, 372, 453, 550, 585
NlaIV	GGNNCC	2 cut(s)	132, 615
NmuCI	GTSAC	3 cut(s)	163, 322, 661
NspI	RCATGY	2 cut(s)	127, 372
PcsI	WCGNNNNNNNCGW	1 cut(s)	164
PctI	GAATGC	1 cut(s)	462
PfeI	GAWTC	1 cut(s)	177
Pfl23II	CGTACG	1 cut(s)	43
PflMI	CCANNNNNTGG	1 cut(s)	314
PkrI	GCNGC	2 cut(s)	84, 99
PmaCI	CACGTG	2 cut(s)	159, 168
PmlI	CACGTG	2 cut(s)	159, 168
Ppu21I	YACGTR	2 cut(s)	159, 168
PpuMI	RGGWCCY	1 cut(s)	613
Psp124BI	GAGCTC	1 cut(s)	215
Psp5II	RGGWCCY	1 cut(s)	613
PspCI	CACGTG	2 cut(s)	159, 168
PspLI	CGTACG	1 cut(s)	43
PspN4I	GGNNCC	2 cut(s)	132, 615
PspPI	GGNCC	3 cut(s)	287, 305, 613
PspPPI	RGGWCCY	1 cut(s)	613
PsuI	RGATCY	2 cut(s)	248, 625
RsaI	GTAC	1 cut(s)	45
RsaNI	GTAC	1 cut(s)	44
RseI	CAYNNNNRTG	2 cut(s)	128, 198
SacI	GAGCTC	1 cut(s)	215
SatI	GCNGC	2 cut(s)	83, 98
Sau3AI	GATC	4 cut(s)	248, 562, 619, 625
Sau96I	GGNCC	3 cut(s)	287, 305, 613
SduI	GDGCHC	1 cut(s)	215
SfaNI	GCATC	2 cut(s)	29, 202
SinI	GGWCC	2 cut(s)	305, 613
SmiMI	CAYNNNNRTG	2 cut(s)	128, 198
SmlI	CTYRAG	1 cut(s)	421
SmoI	CTYRAG	1 cut(s)	421
Sse9I	AATT	2 cut(s)	345, 385
SstI	GAGCTC	1 cut(s)	215
StyI	CCWWGG	2 cut(s)	313, 493
TaaI	ACNGT	7 cut(s)	52, 305, 322, 382, 505, 638, 667
TaiI	ACGT	2 cut(s)	161, 170
TaqI	TCGA	1 cut(s)	196
TasI	AATT	2 cut(s)	345, 385
TfiI	GAWTC	1 cut(s)	177
TscAI	CASTG	2 cut(s)	385, 672
TseFI	GTSAC	3 cut(s)	163, 322, 661
TseI	GCWGC	2 cut(s)	82, 97
Tsp45I	GTSAC	3 cut(s)	163, 322, 661
TspDTI	ATGAA	2 cut(s)	49, 570
TspGWI	ACGGA	2 cut(s)	61, 189
TspRI	CASTG	2 cut(s)	385, 672
Van91I	CCANNNNNTGG	1 cut(s)	314
VpaK11BI	GGWCC	2 cut(s)	305, 613
XapI	RAATTY	1 cut(s)	385
XceI	RCATGY	2 cut(s)	127, 372

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.