Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr17

Orthogroup ID

OG0010113

Physical Location & Seq

Genomic Coordinates Forward (+)

24998083 .. 25007765

Gene Structure 9683 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD17G1207100.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2805 bp

ATGGAGGCGGTGTCGCTGTGCAGCAGCAGCAGCACAGAGCTTTCGCCGGAGGAAGAAAGGATTTTGATACGAGACATTGCTTTGGCTGCTGAAGCCAATTCCAAAGAGGGCGATGTCTTCTACTTGCTCACCCAAAGATGGTGGCAACGTTGGATTGATTATGTGAACCATGACCAACCCAATAACCCGAATGATGCATCCTCGGTGTCGGAGCATTGTGATTCGCCCGGTTCCAGTGCCTTAAAGAGGCCTGCTGGTATTGATAATTCTGACTTGATATATGATGCAGCATCAGAGGACACCAATTCGGGCATGGAGATACATGATACGTTACTGGAAGGCCGCGATTATGTCTTGCTCCCGCATGAAGTTTGGAACCGATTGCATAAATGGTATGGTGGTGGTCCAACATTGCCAAGGAAAGTGATTAGTTCAGGTCTTTCTCAGCCGGAGATGGCAGTAGAAGTGTACCCTCTGCGGCTTCAATTACTTGTGATGCCAAAAGGTGACCGCTCTACTGTACGAATAAGCAAGAAGGAAACCATTGCAGAGCTTCACAGAAGAGCTTGTGATATCTTTGATCTTAGCTTGGAACAAGTGTGCATTTGGGATTACTATGGACGCCGGAAACATGCCCTGATGAACGACATGGATAAAACTCTTGATGATGCCAATATACAGATGGATCAGGATATTCTGGTGGAGGTGCTTAACCCTGTCAATGGTAACACATCGGGCGGATCCCCGAGTTCTGTTCGCTCTTTAGAGAAGGAAGCTTCCTCTGTTCTTGTAGAGCCTTCTAAGTCAAGCTTGTCGATTGCAGGAGGTTTATCTGCAACCAGGGGTGCATCAAAGAACTACAGCTCAGAGCTCATACATAGTCAAGGCCTGATTGCAAGGGAACTGGATACTACATATCCTACGACTGGTGTTAGTACTAGGGGGTCATCTGTTGGTTTGACTGGGTTGCAAAACCTTGGGAATACTTGTTTTATGAATAGTGCTATACAGTGCCTCGTTCATACACCGGAGTTCGCTAGATATTTTCGGGAAGATTATCATCAAGAGATAAACTGGCAAAACCCTCTAGGCATGGTTGGTGAGCTAGCTGTAGCATTTGGTGAGTTACTGCGGAAGCTATGGGCACCTGGACGAACACCAGTGTCCCCTCGACCTTTTAAATCAAAACTTGCTCGCTTTGCGCCTCAGTTTAGTGGTTATAATCAGCACGATTCTCAGGAGCTTTTGGCATTTTTGCTAGATGGTCTTCATGAAGATCTGAATCGCGTGAAACACAAACCTTATATAAAGTCTAGAGATGCTGATGGCCGGCCTGATGAAGAAGTCGCGGATGAGTATTGGGCAAACCACACTGCTCGTAATGATTCTATAATTGTTGATGTGTGCCAAGGCCAATATAAGTCAACTTTGGTTTGTCCCGTTTGCAATAAAGTCTCTGTTACGTTTGATCCCTTTATGTACCTTTCGTTGCCACTCCAGTCCACCACCACTAGAACAATGACAGTGACAGTTTTTTCTTGCGATGGAAGTGCATTGCCGTCTGCTTGCACTGTCACAGTCCCAAAACAGGGACGTTGCAGGGACTTGATCCAGGTGCTTAGCAATGCTAGTTCTGTGAAGCACAGTGAAAAGCTTTTGCTTGTGGAGATACGAAACCATATGATTCAGAGATTTTTAGAAGACCCATTAATATCATTGTCTACCATCAAAGATGATGACCATCTTGCTGCTTATAAGGTTCCAAAATTGCCAAACAAAACAAAGTATCTTCAGTTGATACATCGCCGTCGAGAACAAGGAATTAGTGATTCCCAGGTTGCATCAGGATGGAGACCCTATGGAATACCTCTCGTCTCGCCAATCTCTTGTGTTGATGAAATTAAAGGAGGCAATATACAGACGATTGTTCATAAAATGCTTTCTCCAATGCTTAAAGCTAAAAGTATGGATATATCCGGTGTAAGCTCAACAACAGCTGGATCAGACGCCTCTCTTGAATTGGGTTTACGCGAAACATGTACTGATTCCATTGTATCAAATTCAGCTAGCAAGGACATCACTAGTTCTGAAGTGGTGAAAGCCCAAGAATTGCCTCTAAAGTTGGTGGCTGAAAATAATTCATGCATTGATCTATCAGCGAGGAAAGATAAAGCCATCAAACTGGCCTCATCTTCAACATCAATACTAATATATGTTGATTGGTCACAGAAGCTTTCGGAAAAGTATGATACTCATTATCTGGAAACCTTGCCAGAAGTTTATAAATATGGACCTGTAACAAAGAAAGCCCGAACTGAACCTCTCTCCTTATACACCTGCCTCGAAGCTTTTCTACGTGAAGAACCACTGGTGCCTGAAGATATGTGGTACTGCCCGAAGTGCAATGAGCGAAGGCAAGCAAGTAAGAAGCTTGATCTATGGAGGCTTCCAGAAGTGTTAGTCATCCATCTAAAGAGGTTCTCATACAGCAGGTCGATGAAGCATAAACTGGAAACCTTTGTGGATTTCCCAATCCATGGTTTTGATCTAACACGTTACGTTGCTAACAAAAACAACTCGCGACGTCAACTTTATGAGCTCTATGCCTTGACCAATCACATTGGCGGAATGGGTAGCGGCCACTACACTGCACATATCAAGCTTCTAGACGAGAATAGGTGGTACAGTTTTGATGACAGTTGCGTATCACCGATAAATGAAGACGAGGTGAAGTCAGGCGCCGCGTATGTACTCTTTTATCGGCGTGTGCCAACTGAAGATGCAGCTGTTAGCGATGTGGCCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006508 GO:0006511 GO:0006807 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009987 GO:0019538 GO:0019941 GO:0030163 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043632 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044424 GO:0044464 GO:0051603 GO:0071704 GO:1901564 GO:1901565 GO:1901575

KEGG Pathways

Metabolic & Signaling

ko04137 map04137

Pfam Domains

Protein Families

DUSP UCH USP7_C2

Protein Analysis

935

Amino Acids

104.61

Weight (kDa)

6.04

Isoelectric Point (pI)

51.66

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DUSP	PF06337	37 - 143	3.8e-19	DUSP domain
Ubiquitin_UBP8	PF25242	161 - 215	3.9e-11	UBP8-like, ubiquitin-like domain
UCH	PF00443	321 - 920	2.1e-77	Ubiquitin carboxyl-terminal hydrolase
UCH_1	PF13423	762 - 902	2.6e-08	Ubiquitin carboxyl-terminal hydrolase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0010113)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G40930 AT2G40930
fragaria_vesca	FvH4_1g29170 FvH4_1g29170
malus_domestica	MD17G1207100.v1.1
prunus_persica	Prupe.7G027100_v2.0.a1 Prupe.7G027100_v2.0.a1 Prupe.7G027100_v2.0.a1 Prupe.7G027100_v2.0.a1 Prupe.7G027100_v2.0.a1 Prupe.7G027100_v2.0.a1
rosa_chinensis	RchiOBHm_Chr3g0494551
rosa_laevigata	RLG00000022671
rosa_multiflora	Rmu_sc0000152.1_g000004
rosa_roxburghii	Rroxscaffold_6G00391080
rosa_rugosa	Rorug03G0265600
rosa_samantha	Rh3AG315800 Rh3BG351000 Rh3CG347800 Rh3DG350300
rosa_wichuraiana	Rw3G027570

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	3 cut(s)	1221, 1755, 2283
AarI	CACCTGC	1 cut(s)	2345
AatII	GACGTC	1 cut(s)	2587
Acc36I	ACCTGC	2 cut(s)	2345, 2481
AccB1I	GGYRCC	3 cut(s)	1144, 2371, 2738
AccB7I	CCANNNNNTGG	1 cut(s)	2537
AccBSI	CCGCTC	1 cut(s)	513
AccI	GTMKAC	1 cut(s)	1721
AccII	CGCG	6 cut(s)	345, 1287, 1349, 2031, 2581, 2744
AclI	AACGTT	1 cut(s)	148
AclWI	GGATC	6 cut(s)	693, 735, 748, 1463, 1603, 2008
AcoI	YGGCCR	2 cut(s)	1327, 2638
AcsI	RAATTY	1 cut(s)	2059
AcuI	CTGAAG	5 cut(s)	111, 1775, 2109, 2397, 2796
AcyI	GRCGYC	4 cut(s)	622, 2007, 2584, 2739
AfaI	GTAC	8 cut(s)	470, 522, 937, 1481, 2041, 2390, 2684, 2751
AfiI	CCNNNNNNNGG	7 cut(s)	138, 246, 722, 926, 1588, 1589, 2537
AflIII	ACRYGT	2 cut(s)	2036, 2552
AgsI	TTSAA	3 cut(s)	485, 2018, 2196
AhlI	ACTAGT	1 cut(s)	2081
AjnI	CCWGG	4 cut(s)	839, 1147, 1611, 1833
Alw21I	GWGCWC	2 cut(s)	873, 2601
Alw26I	GTCTC	4 cut(s)	66, 1459, 1846, 1879
AlwI	GGATC	6 cut(s)	693, 735, 748, 1463, 1603, 2008
Ama87I	CYCGRG	1 cut(s)	745
AoxI	GGCC	9 cut(s)	248, 340, 886, 1327, 1331, 1411, 2184, 2638, 2799
ApeKI	GCWGC	8 cut(s)	21, 24, 27, 30, 86, 287, 1748, 2783
ApoI	RAATTY	1 cut(s)	2059
AseI	ATTAAT	1 cut(s)	1709
Asp700I	GAANNNNTTC	1 cut(s)	2349
AspLEI	GCGC	2 cut(s)	1204, 2741
AspS9I	GGNCC	2 cut(s)	404, 2291
AsuC2I	CCSGG	1 cut(s)	228
AsuHPI	GGTGA	7 cut(s)	121, 518, 1112, 1133, 2107, 2700, 2740
AsuNHI	GCTAGC	2 cut(s)	1105, 2066
AvaI	CYCGRG	1 cut(s)	745
AvaII	GGWCC	2 cut(s)	404, 2291
BaeGI	GKGCMC	1 cut(s)	1147
BamHI	GGATCC	1 cut(s)	740
BanI	GGYRCC	3 cut(s)	1144, 2371, 2738
BanII	GRGCYC	2 cut(s)	873, 2601
BarI	GAAGNNNNNNTAC	2 cut(s)	2337, 2369
BbsI	GAAGAC	4 cut(s)	109, 1259, 1707, 2727
Bbv12I	GWGCWC	2 cut(s)	873, 2601
BbvI	GCAGC	8 cut(s)	33, 36, 39, 42, 73, 299, 1735, 2795
BceAI	ACGGC	2 cut(s)	1543, 1791
BcgI	CGANNNNNNTGC	2 cut(s)	1532, 1566
BciT130I	CCWGG	4 cut(s)	841, 1149, 1613, 1835
BciVI	GTATCC	1 cut(s)	901
BcnI	CCSGG	1 cut(s)	228
BcoDI	GTCTC	4 cut(s)	66, 1459, 1846, 1879
BcuI	ACTAGT	1 cut(s)	2081
BfmI	CTRYAG	2 cut(s)	859, 1110
BfoI	RGCGCY	1 cut(s)	2742
BfuAI	ACCTGC	2 cut(s)	2345, 2481
BfuI	GTATCC	1 cut(s)	901
BglII	AGATCT	1 cut(s)	1276
BlpI	GCTNAGC	1 cut(s)	1619
BmcAI	AGTACT	1 cut(s)	937
Bme1390I	CCNGG	5 cut(s)	228, 841, 1149, 1613, 1835
Bme18I	GGWCC	2 cut(s)	404, 2291
BmeT110I	CYCGRG	1 cut(s)	745
BmgT120I	GGNCC	2 cut(s)	404, 2291
BmiI	GGNNCC	7 cut(s)	232, 377, 742, 1146, 1761, 2373, 2740
BmrFI	CCNGG	5 cut(s)	228, 841, 1149, 1613, 1835
BmrI	ACTGGG	1 cut(s)	972
BmtI	GCTAGC	2 cut(s)	1109, 2070
BmuI	ACTGGG	1 cut(s)	972
BpiI	GAAGAC	4 cut(s)	109, 1259, 1707, 2727
BpmI	CTGGAG	1 cut(s)	1481
Bpu1102I	GCTNAGC	1 cut(s)	1619
BpuMI	CCSGG	1 cut(s)	228
BsaAI	YACGTR	1 cut(s)	2357
BsaBI	GATNNNNATC	3 cut(s)	1059, 1281, 1740
BsaHI	GRCGYC	4 cut(s)	622, 2007, 2584, 2739
BsaI	GGTCTC	1 cut(s)	1846
BsaJI	CCNNGG	7 cut(s)	201, 416, 840, 976, 1408, 1833, 2536
BsaWI	WCCGGW	2 cut(s)	1027, 1976
BsaXI	ACNNNNNCTCC	1 cut(s)	26
Bsc4I	CCNNNNNNNGG	7 cut(s)	138, 246, 722, 926, 1588, 1589, 2537
Bse118I	RCCGGY	1 cut(s)	1329
Bse3DI	GCAATG	6 cut(s)	75, 410, 543, 1553, 1630, 2410
Bse8I	GATNNNNATC	3 cut(s)	1059, 1281, 1740
BseBI	CCWGG	4 cut(s)	841, 1149, 1613, 1835
BseDI	CCNNGG	7 cut(s)	201, 416, 840, 976, 1408, 1833, 2536
BseGI	GGATG	4 cut(s)	197, 1357, 1853, 2463
BseJI	GATNNNNATC	3 cut(s)	1059, 1281, 1740
BseLI	CCNNNNNNNGG	7 cut(s)	138, 246, 722, 926, 1588, 1589, 2537
BseMI	GCAATG	6 cut(s)	75, 410, 543, 1553, 1630, 2410
BseMII	CTCAG	4 cut(s)	458, 879, 1220, 1250
BseSI	GKGCMC	1 cut(s)	1147
BseXI	GCAGC	8 cut(s)	33, 36, 39, 42, 73, 299, 1735, 2795
BsgI	GTGCAG	2 cut(s)	40, 2634
Bsh1236I	CGCG	6 cut(s)	345, 1287, 1349, 2031, 2581, 2744
BshFI	GGCC	9 cut(s)	250, 342, 888, 1329, 1333, 1413, 2186, 2640, 2801
BshNI	GGYRCC	3 cut(s)	1144, 2371, 2738
BsiHKAI	GWGCWC	2 cut(s)	873, 2601
BsiHKCI	CYCGRG	1 cut(s)	745
BsiSI	CCGG	7 cut(s)	47, 228, 449, 625, 1028, 1330, 1977
BslFI	GGGAC	5 cut(s)	1150, 1422, 1565, 1605, 1616
BslI	CCNNNNNNNGG	7 cut(s)	138, 246, 722, 926, 1588, 1589, 2537
BsmAI	GTCTC	4 cut(s)	66, 1459, 1846, 1879
BsmBI	CGTCTC	1 cut(s)	1879
BsmFI	GGGAC	5 cut(s)	1150, 1422, 1565, 1605, 1616
BsnI	GGCC	9 cut(s)	250, 342, 888, 1329, 1333, 1413, 2186, 2640, 2801
Bso31I	GGTCTC	1 cut(s)	1846
BsoBI	CYCGRG	1 cut(s)	745
Bsp1286I	GDGCHC	3 cut(s)	873, 1147, 2601
Bsp1720I	GCTNAGC	1 cut(s)	1619
Bsp19I	CCATGG	1 cut(s)	2536
Bsp68I	TCGCGA	1 cut(s)	2581
BspANI	GGCC	9 cut(s)	250, 342, 888, 1329, 1333, 1413, 2186, 2640, 2801
BspCNI	CTCAG	4 cut(s)	457, 878, 1219, 1249
BspFNI	CGCG	6 cut(s)	345, 1287, 1349, 2031, 2581, 2744
BspHI	TCATGA	1 cut(s)	1270
BspLI	GGNNCC	7 cut(s)	232, 377, 742, 1146, 1761, 2373, 2740
BspMI	ACCTGC	2 cut(s)	2345, 2481
BspOI	GCTAGC	2 cut(s)	1109, 2070
BspPI	GGATC	6 cut(s)	693, 735, 748, 1463, 1603, 2008
BspQI	GCTCTTC	1 cut(s)	556
BspT107I	GGYRCC	3 cut(s)	1144, 2371, 2738
BspTNI	GGTCTC	1 cut(s)	1846
BsrBI	CCGCTC	1 cut(s)	513
BsrDI	GCAATG	6 cut(s)	75, 410, 543, 1553, 1630, 2410
BsrFI	RCCGGY	1 cut(s)	1329
BssAI	RCCGGY	1 cut(s)	1329
BssECI	CCNNGG	7 cut(s)	201, 416, 840, 976, 1408, 1833, 2536
BssNI	GRCGYC	4 cut(s)	622, 2007, 2584, 2739
BssT1I	CCWWGG	4 cut(s)	416, 976, 1408, 2536
Bst2UI	CCWGG	4 cut(s)	841, 1149, 1613, 1835
Bst4CI	ACNGT	9 cut(s)	520, 1011, 1525, 1531, 1573, 1579, 1646, 2687, 2699
Bst6I	CTCTTC	1 cut(s)	556
BstACI	GRCGYC	4 cut(s)	622, 2007, 2584, 2739
BstBAI	YACGTR	1 cut(s)	2357
BstC8I	GCNNGC	7 cut(s)	252, 1107, 1195, 1331, 1567, 2068, 2418
BstDEI	CTNAG	7 cut(s)	444, 584, 801, 865, 1206, 1236, 1619
BstDSI	CCRYGG	1 cut(s)	2536
BstEII	GGTNACC	1 cut(s)	506
BstENI	CCTNNNNNAGG	1 cut(s)	244
BstF5I	GGATG	4 cut(s)	197, 1357, 1853, 2463
BstFNI	CGCG	6 cut(s)	345, 1287, 1349, 2031, 2581, 2744
BstH2I	RGCGCY	1 cut(s)	2742
BstHHI	GCGC	2 cut(s)	1204, 2741
BstMAI	GTCTC	4 cut(s)	66, 1459, 1846, 1879
BstMWI	GCNNNNNNNGC	6 cut(s)	27, 30, 86, 92, 1199, 2400
BstNI	CCWGG	4 cut(s)	841, 1149, 1613, 1835
BstNSI	RCATGY	2 cut(s)	635, 2040
BstPI	GGTNACC	1 cut(s)	506
BstSCI	CCNGG	5 cut(s)	226, 839, 1147, 1611, 1833
BstSFI	CTRYAG	2 cut(s)	859, 1110
BstSLI	GKGCMC	1 cut(s)	1147
BstUI	CGCG	6 cut(s)	345, 1287, 1349, 2031, 2581, 2744
BstV1I	GCAGC	8 cut(s)	33, 36, 39, 42, 73, 299, 1735, 2795
BstV2I	GAAGAC	4 cut(s)	109, 1259, 1707, 2727
BstX2I	RGATCY	2 cut(s)	740, 1276
BstXI	CCANNNNNNTGG	1 cut(s)	2182
BstYI	RGATCY	2 cut(s)	740, 1276
BsuI	GTATCC	1 cut(s)	901
BsuRI	GGCC	9 cut(s)	250, 342, 888, 1329, 1333, 1413, 2186, 2640, 2801
BtgI	CCRYGG	1 cut(s)	2536
BtgZI	GCGATG	3 cut(s)	126, 1557, 1787
BtsCI	GGATG	4 cut(s)	197, 1357, 1853, 2463
BtsI	GCAGTG	2 cut(s)	1371, 2646
BtsIMutI	CAGTG	9 cut(s)	241, 1016, 1167, 1371, 1530, 1569, 1651, 2366, 2646
BtuMI	TCGCGA	1 cut(s)	2581
BveI	ACCTGC	2 cut(s)	2345, 2481
Cac8I	GCNNGC	7 cut(s)	252, 1107, 1195, 1331, 1567, 2068, 2418
CciI	TCATGA	1 cut(s)	1270
CfoI	GCGC	2 cut(s)	1204, 2741
Cfr10I	RCCGGY	1 cut(s)	1329
Cfr13I	GGNCC	2 cut(s)	404, 2291
CseI	GACGC	2 cut(s)	630, 2015
Csp6I	GTAC	8 cut(s)	469, 521, 936, 1480, 2040, 2389, 2683, 2750
CspCI	CAANNNNNGTGG	2 cut(s)	122, 157
CviQI	GTAC	8 cut(s)	469, 521, 936, 1480, 2040, 2389, 2683, 2750
DdeI	CTNAG	7 cut(s)	444, 584, 801, 865, 1206, 1236, 1619
DinI	GGCGCC	1 cut(s)	2740
DraI	TTTAAA	1 cut(s)	1180
EaeI	YGGCCR	2 cut(s)	1327, 2638
Eam1104I	CTCTTC	1 cut(s)	556
EarI	CTCTTC	1 cut(s)	556
EciI	GGCGGA	2 cut(s)	753, 2640
Ecl136II	GAGCTC	2 cut(s)	871, 2599
Eco130I	CCWWGG	4 cut(s)	416, 976, 1408, 2536
Eco147I	AGGCCT	2 cut(s)	250, 888
Eco24I	GRGCYC	2 cut(s)	873, 2601
Eco31I	GGTCTC	1 cut(s)	1846
Eco32I	GATATC	1 cut(s)	574
Eco47I	GGWCC	2 cut(s)	404, 2291
Eco53kI	GAGCTC	2 cut(s)	871, 2599
Eco57I	CTGAAG	5 cut(s)	111, 1775, 2109, 2397, 2796
Eco88I	CYCGRG	1 cut(s)	745
Eco91I	GGTNACC	1 cut(s)	506
EcoICRI	GAGCTC	2 cut(s)	871, 2599
EcoNI	CCTNNNNNAGG	1 cut(s)	244
EcoO65I	GGTNACC	1 cut(s)	506
EcoRII	CCWGG	4 cut(s)	839, 1147, 1611, 1833
EcoRV	GATATC	1 cut(s)	574
EcoT14I	CCWWGG	4 cut(s)	416, 976, 1408, 2536
EcoT22I	ATGCAT	2 cut(s)	199, 2147
EcoT38I	GRGCYC	2 cut(s)	873, 2601
EgeI	GGCGCC	1 cut(s)	2740
EheI	GGCGCC	1 cut(s)	2740
ErhI	CCWWGG	4 cut(s)	416, 976, 1408, 2536
Esp3I	CGTCTC	1 cut(s)	1879
FalI	AAGNNNNNCTT	2 cut(s)	794, 826
FaqI	GGGAC	5 cut(s)	1150, 1422, 1565, 1605, 1616
FauI	CCCGC	1 cut(s)	369
FauNDI	CATATG	1 cut(s)	1680
FblI	GTMKAC	1 cut(s)	1721
FokI	GGATG	4 cut(s)	184, 1364, 1860, 2450
FriOI	GRGCYC	2 cut(s)	873, 2601
FseI	GGCCGGCC	1 cut(s)	1333
GlaI	GCGC	2 cut(s)	1203, 2740
GsuI	CTGGAG	1 cut(s)	1481
HaeII	RGCGCY	1 cut(s)	2742
HaeIII	GGCC	9 cut(s)	250, 342, 888, 1329, 1333, 1413, 2186, 2640, 2801
HapII	CCGG	7 cut(s)	47, 228, 449, 625, 1028, 1330, 1977
HgaI	GACGC	2 cut(s)	630, 2015
HhaI	GCGC	2 cut(s)	1204, 2741
Hin1I	GRCGYC	4 cut(s)	622, 2007, 2584, 2739
Hin6I	GCGC	2 cut(s)	1202, 2739
HinP1I	GCGC	2 cut(s)	1202, 2739
HincII	GTYRAC	2 cut(s)	1425, 2588
HindII	GTYRAC	2 cut(s)	1425, 2588
HindIII	AAGCTT	7 cut(s)	774, 808, 1652, 2231, 2346, 2429, 2660
HinfI	GANTC	7 cut(s)	221, 1232, 1282, 1385, 1684, 1829, 2045
HpaII	CCGG	7 cut(s)	47, 228, 449, 625, 1028, 1330, 1977
HphI	GGTGA	7 cut(s)	121, 518, 1112, 1133, 2107, 2700, 2740
Hpy166II	GTNNAC	7 cut(s)	166, 469, 1425, 1503, 1722, 2027, 2588
Hpy188I	TCNGA	9 cut(s)	211, 271, 295, 868, 1281, 1689, 2005, 2089, 2239
Hpy8I	GTNNAC	7 cut(s)	166, 469, 1425, 1503, 1722, 2027, 2588
Hpy99I	CGWCG	2 cut(s)	1812, 2586
HpyAV	CCTTC	5 cut(s)	332, 529, 763, 807, 2406
HpyCH4III	ACNGT	9 cut(s)	520, 1011, 1525, 1531, 1573, 1579, 1646, 2687, 2699
HpyCH4IV	ACGT	8 cut(s)	148, 329, 1463, 1594, 2356, 2554, 2559, 2584
HpyF10VI	GCNNNNNNNGC	6 cut(s)	27, 30, 86, 92, 1199, 2400
HpyF3I	CTNAG	7 cut(s)	444, 584, 801, 865, 1206, 1236, 1619
HpySE526I	ACGT	8 cut(s)	148, 329, 1463, 1594, 2356, 2554, 2559, 2584
Hsp92I	GRCGYC	4 cut(s)	622, 2007, 2584, 2739
HspAI	GCGC	2 cut(s)	1202, 2739
KasI	GGCGCC	1 cut(s)	2738
KroI	GCCGGC	1 cut(s)	1329
KroNI	GCCGGC	1 cut(s)	1331
LguI	GCTCTTC	1 cut(s)	556
LmnI	GCTCC	3 cut(s)	211, 363, 1240
Lsp1109I	GCAGC	8 cut(s)	33, 36, 39, 42, 73, 299, 1735, 2795
MaeII	ACGT	8 cut(s)	148, 329, 1463, 1594, 2356, 2554, 2559, 2584
MbiI	CCGCTC	1 cut(s)	513
MflI	RGATCY	2 cut(s)	740, 1276
MhlI	GDGCHC	3 cut(s)	873, 1147, 2601
Mly113I	GGCGCC	1 cut(s)	2739
MmeI	TCCRAC	3 cut(s)	131, 189, 431
Mph1103I	ATGCAT	2 cut(s)	199, 2147
MroNI	GCCGGC	1 cut(s)	1329
MroXI	GAANNNNTTC	1 cut(s)	2349
MseI	TTAA	6 cut(s)	242, 711, 1179, 1709, 1902, 1953
MslI	CAYNNNNRTG	1 cut(s)	1846
MspA1I	CMGCKG	2 cut(s)	1997, 2786
MspI	CCGG	7 cut(s)	47, 228, 449, 625, 1028, 1330, 1977
MspR9I	CCNGG	5 cut(s)	228, 841, 1149, 1613, 1835
MvaI	CCWGG	4 cut(s)	841, 1149, 1613, 1835
MvnI	CGCG	6 cut(s)	345, 1287, 1349, 2031, 2581, 2744
MwoI	GCNNNNNNNGC	6 cut(s)	27, 30, 86, 92, 1199, 2400
NaeI	GCCGGC	1 cut(s)	1331
NarI	GGCGCC	1 cut(s)	2739
NciI	CCSGG	1 cut(s)	228
NcoI	CCATGG	1 cut(s)	2536
NdeI	CATATG	1 cut(s)	1680
NgoMIV	GCCGGC	1 cut(s)	1329
NheI	GCTAGC	2 cut(s)	1105, 2066
NlaIV	GGNNCC	7 cut(s)	232, 377, 742, 1146, 1761, 2373, 2740
NmuCI	GTSAC	4 cut(s)	506, 1525, 1573, 2223
NruI	TCGCGA	1 cut(s)	2581
NsiI	ATGCAT	2 cut(s)	199, 2147
NspI	RCATGY	2 cut(s)	635, 2040
PagI	TCATGA	1 cut(s)	1270
PaqCI	CACCTGC	1 cut(s)	2345
PceI	AGGCCT	2 cut(s)	250, 888
PciI	ACATGT	1 cut(s)	2036
PciSI	GCTCTTC	1 cut(s)	556
PdiI	GCCGGC	1 cut(s)	1331
PdmI	GAANNNNTTC	1 cut(s)	2349
PfeI	GAWTC	7 cut(s)	221, 1232, 1282, 1385, 1684, 1829, 2045
PflMI	CCANNNNNTGG	1 cut(s)	2537
PluTI	GGCGCC	1 cut(s)	2742
Ppu21I	YACGTR	1 cut(s)	2357
PscI	ACATGT	1 cut(s)	2036
PshBI	ATTAAT	1 cut(s)	1709
PsiI	TTATAA	3 cut(s)	1221, 1755, 2283
Psp124BI	GAGCTC	2 cut(s)	873, 2601
Psp1406I	AACGTT	1 cut(s)	148
Psp6I	CCWGG	4 cut(s)	839, 1147, 1611, 1833
PspEI	GGTNACC	1 cut(s)	506
PspGI	CCWGG	4 cut(s)	839, 1147, 1611, 1833
PspN4I	GGNNCC	7 cut(s)	232, 377, 742, 1146, 1761, 2373, 2740
PspPI	GGNCC	2 cut(s)	404, 2291
PsuI	RGATCY	2 cut(s)	740, 1276
PvuII	CAGCTG	2 cut(s)	1997, 2786
RigI	GGCCGGCC	1 cut(s)	1333
RruI	TCGCGA	1 cut(s)	2581
RsaI	GTAC	8 cut(s)	470, 522, 937, 1481, 2041, 2390, 2684, 2751
RsaNI	GTAC	8 cut(s)	469, 521, 936, 1480, 2040, 2389, 2683, 2750
RseI	CAYNNNNRTG	1 cut(s)	1846
SacI	GAGCTC	2 cut(s)	873, 2601
SapI	GCTCTTC	1 cut(s)	556
SaqAI	TTAA	6 cut(s)	242, 711, 1179, 1709, 1902, 1953
Sau96I	GGNCC	2 cut(s)	404, 2291
ScaI	AGTACT	1 cut(s)	937
ScrFI	CCNGG	5 cut(s)	228, 841, 1149, 1613, 1835
SduI	GDGCHC	3 cut(s)	873, 1147, 2601
SfcI	CTRYAG	2 cut(s)	859, 1110
SfoI	GGCGCC	1 cut(s)	2740
SinI	GGWCC	2 cut(s)	404, 2291
SmiMI	CAYNNNNRTG	1 cut(s)	1846
SpeI	ACTAGT	1 cut(s)	2081
SseBI	AGGCCT	2 cut(s)	250, 888
SspDI	GGCGCC	1 cut(s)	2738
SstI	GAGCTC	2 cut(s)	873, 2601
StuI	AGGCCT	2 cut(s)	250, 888
StyD4I	CCNGG	5 cut(s)	226, 839, 1147, 1611, 1833
StyI	CCWWGG	4 cut(s)	416, 976, 1408, 2536
TaaI	ACNGT	9 cut(s)	520, 1011, 1525, 1531, 1573, 1579, 1646, 2687, 2699
TaiI	ACGT	8 cut(s)	151, 332, 1466, 1597, 2359, 2557, 2562, 2587
TaqI	TCGA	5 cut(s)	815, 1171, 1810, 2343, 2495
TatI	WGTACW	3 cut(s)	935, 2039, 2749
TauI	GCSGC	4 cut(s)	345, 481, 2640, 2744
TfiI	GAWTC	7 cut(s)	221, 1232, 1282, 1385, 1684, 1829, 2045
Tru1I	TTAA	6 cut(s)	242, 711, 1179, 1709, 1902, 1953
Tru9I	TTAA	6 cut(s)	242, 711, 1179, 1709, 1902, 1953
TscAI	CASTG	9 cut(s)	241, 1016, 1167, 1378, 1530, 1576, 1651, 2373, 2653
TseFI	GTSAC	4 cut(s)	506, 1525, 1573, 2223
TseI	GCWGC	8 cut(s)	21, 24, 27, 30, 86, 287, 1748, 2783
Tsp45I	GTSAC	4 cut(s)	506, 1525, 1573, 2223
TspRI	CASTG	9 cut(s)	241, 1016, 1167, 1378, 1530, 1576, 1651, 2373, 2653
Van91I	CCANNNNNTGG	1 cut(s)	2537
VpaK11BI	GGWCC	2 cut(s)	404, 2291
VspI	ATTAAT	1 cut(s)	1709
XagI	CCTNNNNNAGG	1 cut(s)	244
XapI	RAATTY	1 cut(s)	2059
XbaI	TCTAGA	2 cut(s)	1313, 2665
XceI	RCATGY	2 cut(s)	635, 2040
XcmI	CCANNNNNNNNNTGG	2 cut(s)	310, 679
XmiI	GTMKAC	1 cut(s)	1721
XmnI	GAANNNNTTC	1 cut(s)	2349
ZraI	GACGTC	1 cut(s)	2585
ZrmI	AGTACT	1 cut(s)	937
Zsp2I	ATGCAT	2 cut(s)	199, 2147

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.